mRNA_H-elongata_contig197351.5507.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig197351.5507.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE) HSP 1 Score: 152 bits (383), Expect = 1.040e-39 Identity = 86/247 (34.82%), Postives = 133/247 (53.85%), Query Frame = 1
Query: 1 EEMRQIPYREIVGALMWAAMMTRPDISFAAHQLAKFNDNPGPTHWRAAQKALQYLLRTRDLGITYGGEPXXXXFVGPGGARXXXXXXXXXXXXXLSAWVDADYGTCPDTRCSVSGGAVVMAGGAISWFSRVQKVTATASSESEYVALDEMVNELRFLRQVKEFMTPPQSTSPSRYARTMKVQLRWRKKRFSSRRTRHVDIKHHIVRDAIGGGVVHVEYVRSGEQHADILTKSVDVSTFEKHARSLLN 741
EE+ P+RE++G+LMW A TRPDI+ A +A++ +P HWRA L Y++RT DLGIT+ + +VDADY + R SVSGG V+ GG ISWFSR QK +++E+EYV+L +++ E+ FLRQV FM P + ++ + S+ ++H+D++HH +R+ +G + + +V S QHAD LTK++ FE H +++
Sbjct: 210 EEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITF--------------------RRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFEFHRNYVMS 436
BLAST of mRNA_H-elongata_contig197351.5507.1 vs. uniprot
Match: A0A6H5JTK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTK6_9PHAE) HSP 1 Score: 147 bits (371), Expect = 2.350e-39 Identity = 82/247 (33.20%), Postives = 133/247 (53.85%), Query Frame = 1
Query: 1 EEMRQIPYREIVGALMWAAMMTRPDISFAAHQLAKFNDNPGPTHWRAAQKALQYLLRTRDLGITYGGEPXXXXFVGPGGARXXXXXXXXXXXXXLSAWVDADYGTCPDTRCSVSGGAVVMAGGAISWFSRVQKVTATASSESEYVALDEMVNELRFLRQVKEFMTPPQSTSPSRYARTMKVQLRWRKKRFSSRRTRHVDIKHHIVRDAIGGGVVHVEYVRSGEQHADILTKSVDVSTFEKHARSLLN 741
EE+ P+RE++G+LMW A TRPDI+ A +A++ +P HWRA L Y++RT DLGIT+ + + DADY + R SVSGG V+ GG +SWFSR QK +++E+EYV+L +++ E+ FLRQV+ F+ P + ++ + S+ ++H+D++HH +R+ + + + +V S QHAD LTK+++ FE H +++
Sbjct: 26 EEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITF--------------------RRGSVAGLSMEVFADADYASKAADRRSVSGGLVMCGGGCMSWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVRRFVLPEAGMPCIPVLEDNQGAIQLAQNPISNSTSKHIDVRHHFIRELVRRKEISIFHVESAYQHADFLTKALNAGDFECHRNYVMS 252
BLAST of mRNA_H-elongata_contig197351.5507.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE) HSP 1 Score: 152 bits (383), Expect = 1.080e-38 Identity = 86/247 (34.82%), Postives = 133/247 (53.85%), Query Frame = 1
Query: 1 EEMRQIPYREIVGALMWAAMMTRPDISFAAHQLAKFNDNPGPTHWRAAQKALQYLLRTRDLGITYGGEPXXXXFVGPGGARXXXXXXXXXXXXXLSAWVDADYGTCPDTRCSVSGGAVVMAGGAISWFSRVQKVTATASSESEYVALDEMVNELRFLRQVKEFMTPPQSTSPSRYARTMKVQLRWRKKRFSSRRTRHVDIKHHIVRDAIGGGVVHVEYVRSGEQHADILTKSVDVSTFEKHARSLLN 741
EE+ P+RE++G+LMW A TRPDI+ A +A++ +P HWRA L Y++RT DLGIT+ + +VDADY + R SVSGG V+ GG ISWFSR QK +++E+EYV+L +++ E+ FLRQV FM P + ++ + S+ ++H+D++HH +R+ +G + + +V S QHAD LTK++ FE H +++
Sbjct: 384 EEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITF--------------------RRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFEFHRNYVMS 610
BLAST of mRNA_H-elongata_contig197351.5507.1 vs. uniprot
Match: A0A6H5KD60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD60_9PHAE) HSP 1 Score: 144 bits (364), Expect = 3.210e-38 Identity = 84/247 (34.01%), Postives = 131/247 (53.04%), Query Frame = 1
Query: 1 EEMRQIPYREIVGALMWAAMMTRPDISFAAHQLAKFNDNPGPTHWRAAQKALQYLLRTRDLGITYGGEPXXXXFVGPGGARXXXXXXXXXXXXXLSAWVDADYGTCPDTRCSVSGGAVVMAGGAISWFSRVQKVTATASSESEYVALDEMVNELRFLRQVKEFMTPPQSTSPSRYARTMKVQLRWRKKRFSSRRTRHVDIKHHIVRDAIGGGVVHVEYVRSGEQHADILTKSVDVSTFEKHARSLLN 741
EE+ P+RE++G+LMW A TRP+I+ AA +A++ +P HWRA L Y++RT DLGIT+G + + DADY + R SVSGG V+ G ISWFSR Q+ +++E+EYV+L +++ E+ FLRQV FM P + ++ + S+ ++H D++HH + + +G + + YV S QHAD LTK++ FE H +++
Sbjct: 65 EEVVSWPFRELIGSLMWLATQTRPNIANAARAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFG--------------------RGSVAGLSMEVFADADYASKAADRRSVSGGFVMCGRGCISWFSRTQQCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHFDVRHHFIGELVGRKEISIFYVESAYQHADFLTKALHFGDFEFHRNFVMS 291
BLAST of mRNA_H-elongata_contig197351.5507.1 vs. uniprot
Match: A0A6H5LC04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LC04_9PHAE) HSP 1 Score: 151 bits (382), Expect = 5.430e-38 Identity = 87/247 (35.22%), Postives = 134/247 (54.25%), Query Frame = 1
Query: 1 EEMRQIPYREIVGALMWAAMMTRPDISFAAHQLAKFNDNPGPTHWRAAQKALQYLLRTRDLGITYGGEPXXXXFVGPGGARXXXXXXXXXXXXXLSAWVDADYGTCPDTRCSVSGGAVVMAGGAISWFSRVQKVTATASSESEYVALDEMVNELRFLRQVKEFMTPPQSTSPSRYARTMKVQLRWRKKRFSSRRTRHVDIKHHIVRDAIGGGVVHVEYVRSGEQHADILTKSVDVSTFEKHARSLLN 741
EE+ P+RE++G+L+W A TRPDI+ A +A++ +P HWRA L Y++RT DLGIT+G + + DADY + R SVSGG V+ GG ISWFSR QK +++E+EYV++ +++ EL FLR+V FM P + L+ + S+ ++H+D++HH +R+ +G + + +V S QHAD LTK++ V FE H ++N
Sbjct: 901 EEVVSWPFRELIGSLVWLATQTRPDIANALRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFG--------------------RGSVAMLSMEVFGDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSVADVMKELLFLRKVWRFMLPEAGMPCIPVFEDNQRALQLAQNPISNSNSKHIDVRHHSIRELVGREEISIFHVESAYQHADFLTKALHVGDFEFHRNFVMN 1127
BLAST of mRNA_H-elongata_contig197351.5507.1 vs. uniprot
Match: A0A6H5K2R1_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2R1_9PHAE) HSP 1 Score: 150 bits (379), Expect = 1.370e-37 Identity = 85/247 (34.41%), Postives = 133/247 (53.85%), Query Frame = 1
Query: 1 EEMRQIPYREIVGALMWAAMMTRPDISFAAHQLAKFNDNPGPTHWRAAQKALQYLLRTRDLGITYGGEPXXXXFVGPGGARXXXXXXXXXXXXXLSAWVDADYGTCPDTRCSVSGGAVVMAGGAISWFSRVQKVTATASSESEYVALDEMVNELRFLRQVKEFMTPPQSTSPSRYARTMKVQLRWRKKRFSSRRTRHVDIKHHIVRDAIGGGVVHVEYVRSGEQHADILTKSVDVSTFEKHARSLLN 741
EE+ P+RE++G+LMW A TRPDI+ A +A++ +P HWRA L Y++RT DLGIT+ + +VDADY + R SVSGG V+ GG ISWFSR QK +++E+EYV+L +++ E+ FLRQV FM P + ++ + S+ ++H+D++HH +R+ +G + + +V S QHA+ LTK++ FE H +++
Sbjct: 905 EEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITF--------------------RRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHAEFLTKALHAGDFEFHRNYVMS 1131
BLAST of mRNA_H-elongata_contig197351.5507.1 vs. uniprot
Match: A0A6H5L0C9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0C9_9PHAE) HSP 1 Score: 147 bits (372), Expect = 1.090e-36 Identity = 84/247 (34.01%), Postives = 132/247 (53.44%), Query Frame = 1
Query: 1 EEMRQIPYREIVGALMWAAMMTRPDISFAAHQLAKFNDNPGPTHWRAAQKALQYLLRTRDLGITYGGEPXXXXFVGPGGARXXXXXXXXXXXXXLSAWVDADYGTCPDTRCSVSGGAVVMAGGAISWFSRVQKVTATASSESEYVALDEMVNELRFLRQVKEFMTPPQSTSPSRYARTMKVQLRWRKKRFSSRRTRHVDIKHHIVRDAIGGGVVHVEYVRSGEQHADILTKSVDVSTFEKHARSLLN 741
EE+ P+RE++G+LMW A TRPDI+ A +A++ +P HWRA L ++RT DLGIT+ + + DADY + R SVSGG V+ GG ISWFSR QK +++E+EYV+L +++ E+ FLRQV FM P S + ++ + S+ ++H+D++HH +R+ +G + + +V S Q+AD LTK++ FE H +++
Sbjct: 669 EEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYYASPKEIHWRAGLGILGCVVRTSDLGITF--------------------RRRSVAGLSIEVFADADYASKAADRRSVSGGLVICGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMSCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQYADFLTKALHAGDFEFHRNYVMS 895
BLAST of mRNA_H-elongata_contig197351.5507.1 vs. uniprot
Match: A0A0J7K651_LASNI (Gag-pol polyprotein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K651_LASNI) HSP 1 Score: 145 bits (367), Expect = 5.600e-36 Identity = 86/242 (35.54%), Postives = 136/242 (56.20%), Query Frame = 1
Query: 16 IPYREIVGALMWAAMMTRPDISFAAHQLAKFNDNPGPTHWRAAQKALQYLLRTRDLGITYGGEPXXXXFVGPGGARXXXXXXXXXXXXXLSAWVDADYGTCPDTRCSVSGGAVVMAGGAISWFSRVQKVTATASSESEYVALDEMVNELRFLRQVKEFMTPPQSTSPSRYARTMKVQLRWRKKRFSSRRTRHVDIKHHIVRDAIGGGVVHVEYVRSGEQHADILTKSVDVSTFEKHARSLLN 741
+PYR+IVG+LM+ A+ TRPD+S+ L+KF + P HW AA++ L+YL RT ++GIT+ G L A+ D+DY +CPDTR S+S ++ G + W SR Q + AT+++++EYVA+ E E+ ++R++ + Q + Y QL + + RRT+HVD+K H R+ + G++ V+++ S Q ADILTK++ + F K SLLN
Sbjct: 1081 VPYRQIVGSLMYLAVATRPDLSYVVSVLSKFLERPSNAHWNAAKRVLKYLKRTLNVGITFDGN--------------------CDQSNQLVAFSDSDYASCPDTRKSISSVVLMFNNGPVIWSSRKQSIVATSTTDAEYVAMCEAAKEVVWIRRLLNELGIHQEHATVLYCDNAAAQLLVKNPVYH-RRTKHVDVKFHYTREQVKNGLIEVKHIESSNQLADILTKNLSCNKF-KFNCSLLN 1300
BLAST of mRNA_H-elongata_contig197351.5507.1 vs. uniprot
Match: A0A6H5L4G9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G9_9PHAE) HSP 1 Score: 140 bits (353), Expect = 7.690e-36 Identity = 80/247 (32.39%), Postives = 130/247 (52.63%), Query Frame = 1
Query: 1 EEMRQIPYREIVGALMWAAMMTRPDISFAAHQLAKFNDNPGPTHWRAAQKALQYLLRTRDLGITYGGEPXXXXFVGPGGARXXXXXXXXXXXXXLSAWVDADYGTCPDTRCSVSGGAVVMAGGAISWFSRVQKVTATASSESEYVALDEMVNELRFLRQVKEFMTPPQSTSPSRYARTMKVQLRWRKKRFSSRRTRHVDIKHHIVRDAIGGGVVHVEYVRSGEQHADILTKSVDVSTFEKHARSLLN 741
E +P+RE+VG+LMW A TRPDI+ A +A++ +P HW+AA L Y+ RT +GIT+ + +VDADY + R SVSGG V+ GG ++WFSR QK +++E+EYVA+ +++ E+ FLRQV FM P S + ++ ++ ++H+D++HH +R+ + + + +V + QHAD LTK++ +F H ++N
Sbjct: 148 EASADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITF--------------------ERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDASMPCIPVFEDNQGAIQIMHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTQFQHADFLTKAISKESFALHRDFVMN 374
BLAST of mRNA_H-elongata_contig197351.5507.1 vs. uniprot
Match: A0A6H5JW47_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW47_9PHAE) HSP 1 Score: 136 bits (343), Expect = 8.670e-36 Identity = 85/251 (33.86%), Postives = 125/251 (49.80%), Query Frame = 1
Query: 1 EEMRQIPYREIVGALMWAAMMTRPDISFAAHQLAKFNDNPGPTHWRAAQKALQYLLRTRDLGITYGGEPXXXXFVGPGGARXXXXXXXXXXXXXLSAWVDADYGTCPDTRCSVSGGAVVMAGGAISWFSRVQKVTATASSESEYVALDEMVNELRFLRQVKEFMTPPQSTSPSRYARTMKVQLRWRKKRFSSRRTRHVDIKHHIVRDAIGGGVVHVEYVRSGEQHADILTKSVDVSTFEKHARSLLNHSMK 753
EE +P+RE+VG LMW A TRPDIS A +A+ + P +HW+AAQK L YLL T L + + +V AD+ + R SVSG V +AG + W SR QK A ++SE+EY+A+ + V E F + +F+ P + + + + + SS R +H+D++HH +R G + + +V S EQHADILTK++ FE H +L S K
Sbjct: 4 EEAGDVPFREVVGCLMWIACQTRPDISNAVRAVARHSHEPKLSHWKAAQKILNYLLGTAHLSLNF--------------------KRDSSVDVGTLVYVAADFASKATDRRSVSGALVFVAGMLVVWTSRTQKCVAQSTSEAEYLAMGDGVKEALFEDGMLQFLRPSEKSREIKVLEDNEGAIALADNPLSSGRRKHIDVRHHFLRSLTEEGRIKISHVSSKEQHADILTKALPRELFEVHRNFVLGLSEK 234 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig197351.5507.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig197351.5507.1 >prot_H-elongata_contig197351.5507.1 ID=prot_H-elongata_contig197351.5507.1|Name=mRNA_H-elongata_contig197351.5507.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=258bp MRQIPYREIVGALMWAAMMTRPDISFAAHQLAKFNDNPGPTHWRAAQKALback to top mRNA from alignment at H-elongata_contig197351:118..897+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig197351.5507.1 ID=mRNA_H-elongata_contig197351.5507.1|Name=mRNA_H-elongata_contig197351.5507.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=780bp|location=Sequence derived from alignment at H-elongata_contig197351:118..897+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig197351:118..897+ >mRNA_H-elongata_contig197351.5507.1 ID=mRNA_H-elongata_contig197351.5507.1|Name=mRNA_H-elongata_contig197351.5507.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1548bp|location=Sequence derived from alignment at H-elongata_contig197351:118..897+ (Himanthalia elongata Himel1 dioecious)back to top |