mRNA_H-elongata_contig197351.5507.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig197351.5507.1
Unique NamemRNA_H-elongata_contig197351.5507.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig197351.5507.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 1.040e-39
Identity = 86/247 (34.82%), Postives = 133/247 (53.85%), Query Frame = 1
Query:    1 EEMRQIPYREIVGALMWAAMMTRPDISFAAHQLAKFNDNPGPTHWRAAQKALQYLLRTRDLGITYGGEPXXXXFVGPGGARXXXXXXXXXXXXXLSAWVDADYGTCPDTRCSVSGGAVVMAGGAISWFSRVQKVTATASSESEYVALDEMVNELRFLRQVKEFMTPPQSTSPSRYARTMKVQLRWRKKRFSSRRTRHVDIKHHIVRDAIGGGVVHVEYVRSGEQHADILTKSVDVSTFEKHARSLLN 741
            EE+   P+RE++G+LMW A  TRPDI+ A   +A++  +P   HWRA    L Y++RT DLGIT+                             +  +VDADY +    R SVSGG V+  GG ISWFSR QK    +++E+EYV+L +++ E+ FLRQV  FM P             +  ++  +   S+  ++H+D++HH +R+ +G   + + +V S  QHAD LTK++    FE H   +++
Sbjct:  210 EEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITF--------------------RRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFEFHRNYVMS 436          
BLAST of mRNA_H-elongata_contig197351.5507.1 vs. uniprot
Match: A0A6H5JTK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTK6_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 2.350e-39
Identity = 82/247 (33.20%), Postives = 133/247 (53.85%), Query Frame = 1
Query:    1 EEMRQIPYREIVGALMWAAMMTRPDISFAAHQLAKFNDNPGPTHWRAAQKALQYLLRTRDLGITYGGEPXXXXFVGPGGARXXXXXXXXXXXXXLSAWVDADYGTCPDTRCSVSGGAVVMAGGAISWFSRVQKVTATASSESEYVALDEMVNELRFLRQVKEFMTPPQSTSPSRYARTMKVQLRWRKKRFSSRRTRHVDIKHHIVRDAIGGGVVHVEYVRSGEQHADILTKSVDVSTFEKHARSLLN 741
            EE+   P+RE++G+LMW A  TRPDI+ A   +A++  +P   HWRA    L Y++RT DLGIT+                             +  + DADY +    R SVSGG V+  GG +SWFSR QK    +++E+EYV+L +++ E+ FLRQV+ F+ P             +  ++  +   S+  ++H+D++HH +R+ +    + + +V S  QHAD LTK+++   FE H   +++
Sbjct:   26 EEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITF--------------------RRGSVAGLSMEVFADADYASKAADRRSVSGGLVMCGGGCMSWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVRRFVLPEAGMPCIPVLEDNQGAIQLAQNPISNSTSKHIDVRHHFIRELVRRKEISIFHVESAYQHADFLTKALNAGDFECHRNYVMS 252          
BLAST of mRNA_H-elongata_contig197351.5507.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 1.080e-38
Identity = 86/247 (34.82%), Postives = 133/247 (53.85%), Query Frame = 1
Query:    1 EEMRQIPYREIVGALMWAAMMTRPDISFAAHQLAKFNDNPGPTHWRAAQKALQYLLRTRDLGITYGGEPXXXXFVGPGGARXXXXXXXXXXXXXLSAWVDADYGTCPDTRCSVSGGAVVMAGGAISWFSRVQKVTATASSESEYVALDEMVNELRFLRQVKEFMTPPQSTSPSRYARTMKVQLRWRKKRFSSRRTRHVDIKHHIVRDAIGGGVVHVEYVRSGEQHADILTKSVDVSTFEKHARSLLN 741
            EE+   P+RE++G+LMW A  TRPDI+ A   +A++  +P   HWRA    L Y++RT DLGIT+                             +  +VDADY +    R SVSGG V+  GG ISWFSR QK    +++E+EYV+L +++ E+ FLRQV  FM P             +  ++  +   S+  ++H+D++HH +R+ +G   + + +V S  QHAD LTK++    FE H   +++
Sbjct:  384 EEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITF--------------------RRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFEFHRNYVMS 610          
BLAST of mRNA_H-elongata_contig197351.5507.1 vs. uniprot
Match: A0A6H5KD60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD60_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 3.210e-38
Identity = 84/247 (34.01%), Postives = 131/247 (53.04%), Query Frame = 1
Query:    1 EEMRQIPYREIVGALMWAAMMTRPDISFAAHQLAKFNDNPGPTHWRAAQKALQYLLRTRDLGITYGGEPXXXXFVGPGGARXXXXXXXXXXXXXLSAWVDADYGTCPDTRCSVSGGAVVMAGGAISWFSRVQKVTATASSESEYVALDEMVNELRFLRQVKEFMTPPQSTSPSRYARTMKVQLRWRKKRFSSRRTRHVDIKHHIVRDAIGGGVVHVEYVRSGEQHADILTKSVDVSTFEKHARSLLN 741
            EE+   P+RE++G+LMW A  TRP+I+ AA  +A++  +P   HWRA    L Y++RT DLGIT+G                            +  + DADY +    R SVSGG V+   G ISWFSR Q+    +++E+EYV+L +++ E+ FLRQV  FM P             +  ++  +   S+  ++H D++HH + + +G   + + YV S  QHAD LTK++    FE H   +++
Sbjct:   65 EEVVSWPFRELIGSLMWLATQTRPNIANAARAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFG--------------------RGSVAGLSMEVFADADYASKAADRRSVSGGFVMCGRGCISWFSRTQQCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHFDVRHHFIGELVGRKEISIFYVESAYQHADFLTKALHFGDFEFHRNFVMS 291          
BLAST of mRNA_H-elongata_contig197351.5507.1 vs. uniprot
Match: A0A6H5LC04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LC04_9PHAE)

HSP 1 Score: 151 bits (382), Expect = 5.430e-38
Identity = 87/247 (35.22%), Postives = 134/247 (54.25%), Query Frame = 1
Query:    1 EEMRQIPYREIVGALMWAAMMTRPDISFAAHQLAKFNDNPGPTHWRAAQKALQYLLRTRDLGITYGGEPXXXXFVGPGGARXXXXXXXXXXXXXLSAWVDADYGTCPDTRCSVSGGAVVMAGGAISWFSRVQKVTATASSESEYVALDEMVNELRFLRQVKEFMTPPQSTSPSRYARTMKVQLRWRKKRFSSRRTRHVDIKHHIVRDAIGGGVVHVEYVRSGEQHADILTKSVDVSTFEKHARSLLN 741
            EE+   P+RE++G+L+W A  TRPDI+ A   +A++  +P   HWRA    L Y++RT DLGIT+G                            +  + DADY +    R SVSGG V+  GG ISWFSR QK    +++E+EYV++ +++ EL FLR+V  FM P             +  L+  +   S+  ++H+D++HH +R+ +G   + + +V S  QHAD LTK++ V  FE H   ++N
Sbjct:  901 EEVVSWPFRELIGSLVWLATQTRPDIANALRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFG--------------------RGSVAMLSMEVFGDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSVADVMKELLFLRKVWRFMLPEAGMPCIPVFEDNQRALQLAQNPISNSNSKHIDVRHHSIRELVGREEISIFHVESAYQHADFLTKALHVGDFEFHRNFVMN 1127          
BLAST of mRNA_H-elongata_contig197351.5507.1 vs. uniprot
Match: A0A6H5K2R1_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2R1_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 1.370e-37
Identity = 85/247 (34.41%), Postives = 133/247 (53.85%), Query Frame = 1
Query:    1 EEMRQIPYREIVGALMWAAMMTRPDISFAAHQLAKFNDNPGPTHWRAAQKALQYLLRTRDLGITYGGEPXXXXFVGPGGARXXXXXXXXXXXXXLSAWVDADYGTCPDTRCSVSGGAVVMAGGAISWFSRVQKVTATASSESEYVALDEMVNELRFLRQVKEFMTPPQSTSPSRYARTMKVQLRWRKKRFSSRRTRHVDIKHHIVRDAIGGGVVHVEYVRSGEQHADILTKSVDVSTFEKHARSLLN 741
            EE+   P+RE++G+LMW A  TRPDI+ A   +A++  +P   HWRA    L Y++RT DLGIT+                             +  +VDADY +    R SVSGG V+  GG ISWFSR QK    +++E+EYV+L +++ E+ FLRQV  FM P             +  ++  +   S+  ++H+D++HH +R+ +G   + + +V S  QHA+ LTK++    FE H   +++
Sbjct:  905 EEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITF--------------------RRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHAEFLTKALHAGDFEFHRNYVMS 1131          
BLAST of mRNA_H-elongata_contig197351.5507.1 vs. uniprot
Match: A0A6H5L0C9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0C9_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 1.090e-36
Identity = 84/247 (34.01%), Postives = 132/247 (53.44%), Query Frame = 1
Query:    1 EEMRQIPYREIVGALMWAAMMTRPDISFAAHQLAKFNDNPGPTHWRAAQKALQYLLRTRDLGITYGGEPXXXXFVGPGGARXXXXXXXXXXXXXLSAWVDADYGTCPDTRCSVSGGAVVMAGGAISWFSRVQKVTATASSESEYVALDEMVNELRFLRQVKEFMTPPQSTSPSRYARTMKVQLRWRKKRFSSRRTRHVDIKHHIVRDAIGGGVVHVEYVRSGEQHADILTKSVDVSTFEKHARSLLN 741
            EE+   P+RE++G+LMW A  TRPDI+ A   +A++  +P   HWRA    L  ++RT DLGIT+                             +  + DADY +    R SVSGG V+  GG ISWFSR QK    +++E+EYV+L +++ E+ FLRQV  FM P    S        +  ++  +   S+  ++H+D++HH +R+ +G   + + +V S  Q+AD LTK++    FE H   +++
Sbjct:  669 EEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYYASPKEIHWRAGLGILGCVVRTSDLGITF--------------------RRRSVAGLSIEVFADADYASKAADRRSVSGGLVICGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMSCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQYADFLTKALHAGDFEFHRNYVMS 895          
BLAST of mRNA_H-elongata_contig197351.5507.1 vs. uniprot
Match: A0A0J7K651_LASNI (Gag-pol polyprotein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K651_LASNI)

HSP 1 Score: 145 bits (367), Expect = 5.600e-36
Identity = 86/242 (35.54%), Postives = 136/242 (56.20%), Query Frame = 1
Query:   16 IPYREIVGALMWAAMMTRPDISFAAHQLAKFNDNPGPTHWRAAQKALQYLLRTRDLGITYGGEPXXXXFVGPGGARXXXXXXXXXXXXXLSAWVDADYGTCPDTRCSVSGGAVVMAGGAISWFSRVQKVTATASSESEYVALDEMVNELRFLRQVKEFMTPPQSTSPSRYARTMKVQLRWRKKRFSSRRTRHVDIKHHIVRDAIGGGVVHVEYVRSGEQHADILTKSVDVSTFEKHARSLLN 741
            +PYR+IVG+LM+ A+ TRPD+S+    L+KF + P   HW AA++ L+YL RT ++GIT+ G                           L A+ D+DY +CPDTR S+S   ++   G + W SR Q + AT+++++EYVA+ E   E+ ++R++   +   Q  +   Y      QL  +   +  RRT+HVD+K H  R+ +  G++ V+++ S  Q ADILTK++  + F K   SLLN
Sbjct: 1081 VPYRQIVGSLMYLAVATRPDLSYVVSVLSKFLERPSNAHWNAAKRVLKYLKRTLNVGITFDGN--------------------CDQSNQLVAFSDSDYASCPDTRKSISSVVLMFNNGPVIWSSRKQSIVATSTTDAEYVAMCEAAKEVVWIRRLLNELGIHQEHATVLYCDNAAAQLLVKNPVYH-RRTKHVDVKFHYTREQVKNGLIEVKHIESSNQLADILTKNLSCNKF-KFNCSLLN 1300          
BLAST of mRNA_H-elongata_contig197351.5507.1 vs. uniprot
Match: A0A6H5L4G9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G9_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 7.690e-36
Identity = 80/247 (32.39%), Postives = 130/247 (52.63%), Query Frame = 1
Query:    1 EEMRQIPYREIVGALMWAAMMTRPDISFAAHQLAKFNDNPGPTHWRAAQKALQYLLRTRDLGITYGGEPXXXXFVGPGGARXXXXXXXXXXXXXLSAWVDADYGTCPDTRCSVSGGAVVMAGGAISWFSRVQKVTATASSESEYVALDEMVNELRFLRQVKEFMTPPQSTSPSRYARTMKVQLRWRKKRFSSRRTRHVDIKHHIVRDAIGGGVVHVEYVRSGEQHADILTKSVDVSTFEKHARSLLN 741
            E    +P+RE+VG+LMW A  TRPDI+ A   +A++  +P   HW+AA   L Y+ RT  +GIT+                             +  +VDADY +    R SVSGG V+  GG ++WFSR QK    +++E+EYVA+ +++ E+ FLRQV  FM P  S          +  ++      ++  ++H+D++HH +R+ +    + + +V +  QHAD LTK++   +F  H   ++N
Sbjct:  148 EASADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITF--------------------ERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDASMPCIPVFEDNQGAIQIMHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTQFQHADFLTKAISKESFALHRDFVMN 374          
BLAST of mRNA_H-elongata_contig197351.5507.1 vs. uniprot
Match: A0A6H5JW47_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW47_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 8.670e-36
Identity = 85/251 (33.86%), Postives = 125/251 (49.80%), Query Frame = 1
Query:    1 EEMRQIPYREIVGALMWAAMMTRPDISFAAHQLAKFNDNPGPTHWRAAQKALQYLLRTRDLGITYGGEPXXXXFVGPGGARXXXXXXXXXXXXXLSAWVDADYGTCPDTRCSVSGGAVVMAGGAISWFSRVQKVTATASSESEYVALDEMVNELRFLRQVKEFMTPPQSTSPSRYARTMKVQLRWRKKRFSSRRTRHVDIKHHIVRDAIGGGVVHVEYVRSGEQHADILTKSVDVSTFEKHARSLLNHSMK 753
            EE   +P+RE+VG LMW A  TRPDIS A   +A+ +  P  +HW+AAQK L YLL T  L + +                                +V AD+ +    R SVSG  V +AG  + W SR QK  A ++SE+EY+A+ + V E  F   + +F+ P + +   +     +  +       SS R +H+D++HH +R     G + + +V S EQHADILTK++    FE H   +L  S K
Sbjct:    4 EEAGDVPFREVVGCLMWIACQTRPDISNAVRAVARHSHEPKLSHWKAAQKILNYLLGTAHLSLNF--------------------KRDSSVDVGTLVYVAADFASKATDRRSVSGALVFVAGMLVVWTSRTQKCVAQSTSEAEYLAMGDGVKEALFEDGMLQFLRPSEKSREIKVLEDNEGAIALADNPLSSGRRKHIDVRHHFLRSLTEEGRIKISHVSSKEQHADILTKALPRELFEVHRNFVLGLSEK 234          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig197351.5507.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JLN0_9PHAE1.040e-3934.82Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JTK6_9PHAE2.350e-3933.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQB8_9PHAE1.080e-3834.82Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KD60_9PHAE3.210e-3834.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LC04_9PHAE5.430e-3835.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2R1_9PHAE1.370e-3734.41Integrase catalytic domain-containing protein n=3 ... [more]
A0A6H5L0C9_9PHAE1.090e-3634.01Integrase catalytic domain-containing protein n=1 ... [more]
A0A0J7K651_LASNI5.600e-3635.54Gag-pol polyprotein n=1 Tax=Lasius niger TaxID=677... [more]
A0A6H5L4G9_9PHAE7.690e-3632.39Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JW47_9PHAE8.670e-3633.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig197351contigH-elongata_contig197351:118..897 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.9
Seed ortholog evalue7e-27
Seed eggNOG ortholog67593.Physo131909
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size780
Cds size774
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930116.1876554-UTR-H-elongata_contig197351:117..1231622930116.1876554-UTR-H-elongata_contig197351:117..123Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig197351 118..123 +
1691679286.7325816-UTR-H-elongata_contig197351:117..1231691679286.7325816-UTR-H-elongata_contig197351:117..123Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig197351 118..123 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930116.201906-CDS-H-elongata_contig197351:123..8971622930116.201906-CDS-H-elongata_contig197351:123..897Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig197351 124..897 +
1691679286.7466478-CDS-H-elongata_contig197351:123..8971691679286.7466478-CDS-H-elongata_contig197351:123..897Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig197351 124..897 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig197351.5507.1prot_H-elongata_contig197351.5507.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig197351 124..897 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig197351.5507.1

>prot_H-elongata_contig197351.5507.1 ID=prot_H-elongata_contig197351.5507.1|Name=mRNA_H-elongata_contig197351.5507.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=258bp
MRQIPYREIVGALMWAAMMTRPDISFAAHQLAKFNDNPGPTHWRAAQKAL
QYLLRTRDLGITYGGEPXXXXFVGPGGARGSRGGAGGGGGGGLSAWVDAD
YGTCPDTRCSVSGGAVVMAGGAISWFSRVQKVTATASSESEYVALDEMVN
ELRFLRQVKEFMTPPQSTSPSRYARTMKVQLRWRKKRFSSRRTRHVDIKH
HIVRDAIGGGVVHVEYVRSGEQHADILTKSVDVSTFEKHARSLLNHSMKV
SGGVEEE*
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mRNA from alignment at H-elongata_contig197351:118..897+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig197351.5507.1 ID=mRNA_H-elongata_contig197351.5507.1|Name=mRNA_H-elongata_contig197351.5507.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=780bp|location=Sequence derived from alignment at H-elongata_contig197351:118..897+ (Himanthalia elongata Himel1 dioecious)
GAAGAAATGCGCCAGATTCCCTACCGAGAAATCGTTGGAGCCTTAATGTG GGCAGCGATGATGACCAGGCCCGATATTTCATTCGCTGCGCACCAACTGG CGAAATTCAACGACAACCCGGGACCGACACACTGGAGGGCAGCCCAGAAA GCGCTGCAATATTTATTGCGCACTCGGGACCTCGGGATCACCTACGGAGG GGAACCGGNNNNNNNNNNTTTTGTGGGGCCCGGGGGGGCGCGGGGGTCCA GGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGTTATCAGCGTGGGTCGAC GCAGACTACGGCACCTGCCCGGACACGCGTTGCTCAGTGTCGGGAGGGGC GGTGGTGATGGCTGGCGGGGCCATTAGTTGGTTCTCACGAGTGCAAAAGG TAACGGCGACGGCGTCGTCCGAATCGGAATACGTCGCACTGGATGAGATG GTAAACGAGTTGCGTTTCCTACGACAGGTCAAGGAGTTCATGACCCCCCC CCAATCGACGTCGCCATCAAGATACGCGAGGACAATGAAGGTGCAATTAA GATGGCGAAAAAAACGCTTCAGCAGCCGACGAACGAGGCACGTGGACATC AAGCATCACATTGTCCGCGACGCGATCGGGGGGGGGGTGGTTCACGTAGA ATACGTTCGGTCCGGGGAACAGCACGCCGACATCCTCACGAAGTCCGTAG ACGTCAGCACATTTGAGAAGCACGCGAGATCCCTTCTGAATCATTCCATG AAGGTTAGCGGGGGAGTGGAAGAGGAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig197351:118..897+

>mRNA_H-elongata_contig197351.5507.1 ID=mRNA_H-elongata_contig197351.5507.1|Name=mRNA_H-elongata_contig197351.5507.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1548bp|location=Sequence derived from alignment at H-elongata_contig197351:118..897+ (Himanthalia elongata Himel1 dioecious)
ATGCGCCAGATTCCCTACCGAGAAATCGTTGGAGCCTTAATGTGGGCAGC
GATGATGACCAGGCCCGATATTTCATTCGCTGCGCACCAACTGGCGAAAT
TCAACGACAACCCGGGACCGACACACTGGAGGGCAGCCCAGAAAGCGCTG
CAATATTTATTGCGCACTCGGGACCTCGGGATCACCTACGGAGGGGAACC
GGNNNNNNNNNNTTTTGTGGGGCCCGGGGGGGCGCGGGGGTCCAGGGGGG
GGGCGGGGGGGGGGGGGGGGGGGGGGTTATCAGCGTGGGTCGACGCAGAC
TACGGCACCTGCCCGGACACGCGTTGCTCAGTGTCGGGAGGGGCGGTGGT
GATGGCTGGCGGGGCCATTAGTTGGTTCTCACGAGTGCAAAAGGTAACGG
CGACGGCGTCGTCCGAATCGGAATACGTCGCACTGGATGAGATGGTAAAC
GAGTTGCGTTTCCTACGACAGGTCAAGGAGTTCATGACCCCCCCCCAATC
GACGTCGCCATCAAGATACGCGAGGACAATGAAGGTGCAATTAAGATGGC
GAAAAAAACGCTTCAGCAGCCGACGAACGAGGCACGTGGACATCAAGCAT
CACATTGTCCGCGACGCGATCGGGGGGGGGGTGGTTCACGTAGAATACGT
TCGGTCCGGGGAACAGCACGCCGACATCCTCACGAAGTCCGTAGACGTCA
GCACATTTGAGAAGCACGCGAGATCCCTTCTGAATCATTCCATGAAGGTT
AGCGGGGGAGTGGAAGAGGAGTGAATGCGCCAGATTCCCTACCGAGAAAT
CGTTGGAGCCTTAATGTGGGCAGCGATGATGACCAGGCCCGATATTTCAT
TCGCTGCGCACCAACTGGCGAAATTCAACGACAACCCGGGACCGACACAC
TGGAGGGCAGCCCAGAAAGCGCTGCAATATTTATTGCGCACTCGGGACCT
CGGGATCACCTACGGAGGGGAACCGGNNNNNNNNNNTTTTGTGGGGCCCG
GGGGGGCGCGGGGGTCCAGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGG
TTATCAGCGTGGGTCGACGCAGACTACGGCACCTGCCCGGACACGCGTTG
CTCAGTGTCGGGAGGGGCGGTGGTGATGGCTGGCGGGGCCATTAGTTGGT
TCTCACGAGTGCAAAAGGTAACGGCGACGGCGTCGTCCGAATCGGAATAC
GTCGCACTGGATGAGATGGTAAACGAGTTGCGTTTCCTACGACAGGTCAA
GGAGTTCATGACCCCCCCCCAATCGACGTCGCCATCAAGATACGCGAGGA
CAATGAAGGTGCAATTAAGATGGCGAAAAAAACGCTTCAGCAGCCGACGA
ACGAGGCACGTGGACATCAAGCATCACATTGTCCGCGACGCGATCGGGGG
GGGGGTGGTTCACGTAGAATACGTTCGGTCCGGGGAACAGCACGCCGACA
TCCTCACGAAGTCCGTAGACGTCAGCACATTTGAGAAGCACGCGAGATCC
CTTCTGAATCATTCCATGAAGGTTAGCGGGGGAGTGGAAGAGGAGTGA
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