mRNA_H-elongata_contig19711.5501.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19711.5501.1
Unique NamemRNA_H-elongata_contig19711.5501.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig19711.5501.1 vs. uniprot
Match: A0A6H5KZZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZZ4_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 4.860e-27
Identity = 86/182 (47.25%), Postives = 98/182 (53.85%), Query Frame = 1 
Query:    1 AKKLFGQASTGLPGNASIAGYCAVMKAAES-----GSVTALRQLARFIERNPRSVKGHALHARLLD----------------------SIVDARGRVKSDVRVKNEDEDEKIMD----------------REVESGDGLLLAEVARARALRGWLEVDPLEPRAVLGLAALHLERSAAVMGVA 417
            A++L  QA+TG PG+ASIAGY A   AA +     G   ALRQLA F+ERNP SVKGH LHARLL+                      S+    GR     R + + E    +                  E E  DGLLL  VARARALRGWLE DPLEPRAVL LAALH E SAAV+GVA
Sbjct:  336 AQRLLEQAATGSPGDASIAGYRAAATAASAASEGGGMPAALRQLAAFVERNPGSVKGHRLHARLLEMSRREAQXXXXXXXXXXXXXRLSLPQEEGR-----RDRGQGEGRDAIGGAGAQQAGAEKKAAGTAEEEDQDGLLLVGVARARALRGWLEADPLEPRAVLALAALHAEGSAAVVGVA 512
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19711.5501.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KZZ4_9PHAE4.860e-2747.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19711contigH-elongata_contig19711:3047..3465 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size421
Cds size417
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930115.6764348-CDS-H-elongata_contig19711:3046..34631622930115.6764348-CDS-H-elongata_contig19711:3046..3463Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19711 3047..3463 +
1691679286.5253532-CDS-H-elongata_contig19711:3046..34631691679286.5253532-CDS-H-elongata_contig19711:3046..3463Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19711 3047..3463 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19711.5501.1prot_H-elongata_contig19711.5501.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19711 3047..3463 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19711.5501.1

>prot_H-elongata_contig19711.5501.1 ID=prot_H-elongata_contig19711.5501.1|Name=mRNA_H-elongata_contig19711.5501.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=139bp
AKKLFGQASTGLPGNASIAGYCAVMKAAESGSVTALRQLARFIERNPRSV
KGHALHARLLDSIVDARGRVKSDVRVKNEDEDEKIMDREVESGDGLLLAE
VARARALRGWLEVDPLEPRAVLGLAALHLERSAAVMGVA
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mRNA from alignment at H-elongata_contig19711:3047..3465+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19711.5501.1 ID=mRNA_H-elongata_contig19711.5501.1|Name=mRNA_H-elongata_contig19711.5501.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=419bp|location=Sequence derived from alignment at H-elongata_contig19711:3047..3465+ (Himanthalia elongata Himel1 dioecious)
GCAAAGAAGCTATTTGGGCAGGCGTCGACAGGGCTTCCCGGTAACGCCTC
CATCGCGGGTTATTGCGCCGTGATGAAAGCGGCAGAAAGTGGATCGGTCA
CCGCTCTTCGGCAACTCGCGCGCTTCATCGAGCGCAATCCGAGGAGCGTC
AAAGGACACGCCTTACACGCGCGGCTGCTAGACTCGATCGTAGACGCTCG
AGGGCGTGTGAAGAGTGATGTTCGGGTGAAAAACGAGGACGAAGATGAGA
AAATAATGGACCGGGAAGTAGAGTCGGGCGACGGATTGCTCTTGGCCGAA
GTGGCACGGGCCCGTGCGCTGCGGGGATGGCTGGAAGTTGATCCCCTCGA
GCCCCGGGCCGTGCTGGGTCTCGCCGCTCTGCACTTGGAGCGCTCGGCAG
CCGTAATGGGAGTTGCGGA
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Coding sequence (CDS) from alignment at H-elongata_contig19711:3047..3465+

>mRNA_H-elongata_contig19711.5501.1 ID=mRNA_H-elongata_contig19711.5501.1|Name=mRNA_H-elongata_contig19711.5501.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=834bp|location=Sequence derived from alignment at H-elongata_contig19711:3047..3465+ (Himanthalia elongata Himel1 dioecious)
GCAAAGAAGCTATTTGGGCAGGCGTCGACAGGGCTTCCCGGTAACGCCTC
CATCGCGGGTTATTGCGCCGTGATGAAAGCGGCAGAAAGTGGATCGGTCA
CCGCTCTTCGGCAACTCGCGCGCTTCATCGAGCGCAATCCGAGGAGCGTC
AAAGGACACGCCTTACACGCGCGGCTGCTAGACTCGATCGTAGACGCTCG
AGGGCGTGTGAAGAGTGATGTTCGGGTGAAAAACGAGGACGAAGATGAGA
AAATAATGGACCGGGAAGTAGAGTCGGGCGACGGATTGCTCTTGGCCGAA
GTGGCACGGGCCCGTGCGCTGCGGGGATGGCTGGAAGTTGATCCCCTCGA
GCCCCGGGCCGTGCTGGGTCTCGCCGCTCTGCACTTGGAGCGCTCGGCAG
CCGTAATGGGAGTTGCGGCAAAGAAGCTATTTGGGCAGGCGTCGACAGGG
CTTCCCGGTAACGCCTCCATCGCGGGTTATTGCGCCGTGATGAAAGCGGC
AGAAAGTGGATCGGTCACCGCTCTTCGGCAACTCGCGCGCTTCATCGAGC
GCAATCCGAGGAGCGTCAAAGGACACGCCTTACACGCGCGGCTGCTAGAC
TCGATCGTAGACGCTCGAGGGCGTGTGAAGAGTGATGTTCGGGTGAAAAA
CGAGGACGAAGATGAGAAAATAATGGACCGGGAAGTAGAGTCGGGCGACG
GATTGCTCTTGGCCGAAGTGGCACGGGCCCGTGCGCTGCGGGGATGGCTG
GAAGTTGATCCCCTCGAGCCCCGGGCCGTGCTGGGTCTCGCCGCTCTGCA
CTTGGAGCGCTCGGCAGCCGTAATGGGAGTTGCG
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