mRNA_H-elongata_contig197058.5498.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig197058.5498.1 vs. uniprot
Match: A0A6H5KMK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK0_9PHAE) HSP 1 Score: 169 bits (428), Expect = 1.310e-50 Identity = 80/130 (61.54%), Postives = 99/130 (76.15%), Query Frame = 1
Query: 1 MLANAPISFKVGLQGMTAQSTMEAKLVVEALTMKEALFCSNMILRLGFDESFGSVPLYIDNTSALHVAGNRAYSPRAKHIALGYFFAQELVEEGKINIHYVKTEDQLADLGTKHLTKHRHRNFIKLINEF 390
MLANAP+SF+ GLQG+TA STMEA+LV AL MKEA+FCSNM+ LGF + F +P+Y DNT+ LH GNR++S R KHIAL +FF +ELV EGKI+IHY TED LA +GTKH KHR ++ + IN F
Sbjct: 81 MLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYAPTEDNLAHIGTKHFNKHRFKHLMDRINNF 210
BLAST of mRNA_H-elongata_contig197058.5498.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE) HSP 1 Score: 173 bits (438), Expect = 1.190e-49 Identity = 82/130 (63.08%), Postives = 100/130 (76.92%), Query Frame = 1
Query: 1 MLANAPISFKVGLQGMTAQSTMEAKLVVEALTMKEALFCSNMILRLGFDESFGSVPLYIDNTSALHVAGNRAYSPRAKHIALGYFFAQELVEEGKINIHYVKTEDQLADLGTKHLTKHRHRNFIKLINEF 390
MLANAP+SF+ GLQG+TA STMEA+LV AL MKEA+FCSNM+ LGF + F +P+Y DNT+ LH GNR++S R KHIAL +FF +ELV EGKI+IHY TED LAD+GTKH KHR + + LIN F
Sbjct: 306 MLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYFPTEDNLADIGTKHFNKHRFEHLMDLINNF 435
BLAST of mRNA_H-elongata_contig197058.5498.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE) HSP 1 Score: 175 bits (443), Expect = 3.530e-48 Identity = 82/130 (63.08%), Postives = 102/130 (78.46%), Query Frame = 1
Query: 1 MLANAPISFKVGLQGMTAQSTMEAKLVVEALTMKEALFCSNMILRLGFDESFGSVPLYIDNTSALHVAGNRAYSPRAKHIALGYFFAQELVEEGKINIHYVKTEDQLADLGTKHLTKHRHRNFIKLINEF 390
MLANAP+SF+ GLQG+TA STMEA+LV AL MKEA+FCSNM+ LGF + F +P+Y DNT+ LH GNR++S R KHIAL +FF +ELV EGKI+IHYV+TED LAD+GTKH HR ++ + LIN F
Sbjct: 866 MLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVRTEDNLADIGTKHFNNHRFKHLMDLINNF 995
BLAST of mRNA_H-elongata_contig197058.5498.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE) HSP 1 Score: 170 bits (431), Expect = 3.310e-47 Identity = 81/128 (63.28%), Postives = 100/128 (78.12%), Query Frame = 1
Query: 1 MLANAPISFKVGLQGMTAQSTMEAKLVVEALTMKEALFCSNMILRLGFDESFGSVPLYIDNTSALHVAGNRAYSPRAKHIALGYFFAQELVEEGKINIHYVKTEDQLADLGTKHLTKHRHRNFIKLIN 384
MLANAP+SF+ GLQG+TA STMEA+LV AL MKEA+FCSNM+ LG + F +P+Y DNT+ LH GNR++S R KHIAL +FF +ELV EGKI+IHYV TED LAD+GTKH KHR ++ + LIN
Sbjct: 527 MLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGSGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHLMDLIN 654
BLAST of mRNA_H-elongata_contig197058.5498.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE) HSP 1 Score: 168 bits (425), Expect = 1.020e-45 Identity = 80/130 (61.54%), Postives = 100/130 (76.92%), Query Frame = 1
Query: 1 MLANAPISFKVGLQGMTAQSTMEAKLVVEALTMKEALFCSNMILRLGFDESFGSVPLYIDNTSALHVAGNRAYSPRAKHIALGYFFAQELVEEGKINIHYVKTEDQLADLGTKHLTKHRHRNFIKLINEF 390
+LANAP+SF+ GLQG+TA STMEA+LV AL M EA+F SNM+ LGF + F +P+Y DNT+ LH GNR++S R KHIAL +FF +ELV EGKI+IHYV TED LAD+GTKH KHR ++ + LIN F
Sbjct: 1535 VLANAPMSFRSGLQGLTAMSTMEAELVASALAMNEAVFFSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHLMDLINNF 1664
BLAST of mRNA_H-elongata_contig197058.5498.1 vs. uniprot
Match: A0A6H5K129_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K129_9PHAE) HSP 1 Score: 161 bits (408), Expect = 1.950e-43 Identity = 72/128 (56.25%), Postives = 98/128 (76.56%), Query Frame = 1
Query: 1 MLANAPISFKVGLQGMTAQSTMEAKLVVEALTMKEALFCSNMILRLGFDESFGSVPLYIDNTSALHVAGNRAYSPRAKHIALGYFFAQELVEEGKINIHYVKTEDQLADLGTKHLTKHRHRNFIKLIN 384
ML NAP+SFK G+QG TA STMEA+L+ AL MKEA+FCSN++ LG + F VPLY DNT+ LH GNR++S R KHIAL +F+ +EL+ EG+I+IHY+ T+ +AD+GTKHL KHR ++ + +I+
Sbjct: 1036 MLGNAPVSFKSGIQGPTAMSTMEAELIASALAMKEAVFCSNILTELGLGKEFAQVPLYCDNTATLHALGNRSFSSRTKHIALRFFYIRELISEGRISIHYIPTDSNIADIGTKHLNKHRLKHLLDIIS 1163
BLAST of mRNA_H-elongata_contig197058.5498.1 vs. uniprot
Match: A0A6H5J9N2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9N2_9PHAE) HSP 1 Score: 152 bits (385), Expect = 1.490e-42 Identity = 74/132 (56.06%), Postives = 96/132 (72.73%), Query Frame = 1
Query: 1 MLANAPISFKVGLQGMTAQSTMEAKLVVEALTMKEALFCSNMILRLGFDESFGSVPLYIDNTSALHVAGNRAYSPRAKHIALGYFFAQELVEEGKINIHYVKTEDQLADLGTKHLTKHRHRNFIKLINEFKA 396
ML +A ++FK GLQ +TAQSTMEA+LV AL MKEA+FCSN++ LGF + F VPLY DNT+ LH GNR++S R KHIAL +FF ++LV EGKI IH+V T+ AD+GTKHL K R ++ + +I F
Sbjct: 224 MLYDALMAFKSGLQSLTAQSTMEAELVAAALAMKEAVFCSNILTELGFGKEFAQVPLYCDNTATLHSLGNRSHSSRTKHIALRFFFIRDLVSEGKIFIHFVPTDSNPADIGTKHLNKDRFQHLLNMIKNFNV 355
BLAST of mRNA_H-elongata_contig197058.5498.1 vs. uniprot
Match: A0A6H5KBU1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU1_9PHAE) HSP 1 Score: 154 bits (389), Expect = 6.960e-41 Identity = 73/129 (56.59%), Postives = 97/129 (75.19%), Query Frame = 1
Query: 1 MLANAPISFKVGLQGMTAQSTMEAKLVVEALTMKEALFCSNMILRLGFDESFGSVPLYIDNTSALHVAGNRAYSPRAKHIALGYFFAQELVEEGKINIHYVKTEDQLADLGTKHLTKHRHRNFIKLINE 387
M++ AP+SFK GLQ +TA ST+EA+LV AL MKE +FC+NM+ LGF F S PLYI NT+ LHV GN+ +S R KH+AL +F+ +E+V+EG+I+IHY+ TED LAD+GTKHL K RH+ I I +
Sbjct: 560 MMSKAPVSFKFGLQSLTAMSTLEAELVAAALAMKETIFCTNMMKELGFGSEFRSAPLYI-NTATLHVIGNQTFSGRTKHVALRFFYIREIVKEGRISIHYIPTEDNLADIGTKHLNKQRHQCLIDKIKK 687
BLAST of mRNA_H-elongata_contig197058.5498.1 vs. uniprot
Match: A0A6H5KC00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC00_9PHAE) HSP 1 Score: 154 bits (388), Expect = 9.650e-41 Identity = 72/130 (55.38%), Postives = 96/130 (73.85%), Query Frame = 1
Query: 10 NAPISFKVGLQGMTAQSTMEAKLVVEALTMKEALFCSNMILRLGFDESFGSVPLYIDNTSALHVAGNRA-YSPRAKHIALGYFFAQELVEEGKINIHYVKTEDQLADLGTKHLTKHRHRNFIKLINEFKA 396
NA +SFK G+QG TA STMEA+L+ AL MKEA+FCSN++ LGF + F VPLY DNT+ LH GNR+ +S R KHIAL +F+ +ELV EG+I+IHY+ T+ AD+GTKHL KHR ++ + +I+ F
Sbjct: 850 NASVSFKSGIQGPTAMSTMEAELIASALAMKEAVFCSNILTELGFGKEFAQVPLYCDNTATLHALGNRSSFSSRTKHIALRFFYIRELVSEGRISIHYIPTDSNPADIGTKHLNKHRLKHLLDIISSFNV 979
BLAST of mRNA_H-elongata_contig197058.5498.1 vs. uniprot
Match: A0A6H5JBV6_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV6_9PHAE) HSP 1 Score: 153 bits (386), Expect = 1.800e-40 Identity = 72/132 (54.55%), Postives = 96/132 (72.73%), Query Frame = 1
Query: 1 MLANAPISFKVGLQGMTAQSTMEAKLVVEALTMKEALFCSNMILRLGFDESFGSVPLYIDNTSALHVAGNRAYSPRAKHIALGYFFAQELVEEGKINIHYVKTEDQLADLGTKHLTKHRHRNFIKLINEFKA 396
ML +AP+S K G+QG A STMEA+L+ AL MKEA+FCSNM+ LGF + F VPLY DNT+ LH GNR++S R HIAL +F+ +ELV EG+I+IHYV T+ LAD+GTK+L KH ++ + +I+ F
Sbjct: 1064 MLEHAPVSLKSGIQGPAAISTMEAELIASALAMKEAVFCSNMLTELGFGKEFAQVPLYCDNTATLHALGNRSFSSRENHIALRFFYIRELVLEGRISIHYVPTDSNLADIGTKYLNKHWLKHLLDIISSFNV 1195 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig197058.5498.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig197058.5498.1 >prot_H-elongata_contig197058.5498.1 ID=prot_H-elongata_contig197058.5498.1|Name=mRNA_H-elongata_contig197058.5498.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=133bp MLANAPISFKVGLQGMTAQSTMEAKLVVEALTMKEALFCSNMILRLGFDEback to top mRNA from alignment at H-elongata_contig197058:704..1102+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig197058.5498.1 ID=mRNA_H-elongata_contig197058.5498.1|Name=mRNA_H-elongata_contig197058.5498.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=399bp|location=Sequence derived from alignment at H-elongata_contig197058:704..1102+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig197058:704..1102+ >mRNA_H-elongata_contig197058.5498.1 ID=mRNA_H-elongata_contig197058.5498.1|Name=mRNA_H-elongata_contig197058.5498.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=798bp|location=Sequence derived from alignment at H-elongata_contig197058:704..1102+ (Himanthalia elongata Himel1 dioecious)back to top |