mRNA_H-elongata_contig197058.5498.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig197058.5498.1
Unique NamemRNA_H-elongata_contig197058.5498.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig197058.5498.1 vs. uniprot
Match: A0A6H5KMK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK0_9PHAE)

HSP 1 Score: 169 bits (428), Expect = 1.310e-50
Identity = 80/130 (61.54%), Postives = 99/130 (76.15%), Query Frame = 1
Query:    1 MLANAPISFKVGLQGMTAQSTMEAKLVVEALTMKEALFCSNMILRLGFDESFGSVPLYIDNTSALHVAGNRAYSPRAKHIALGYFFAQELVEEGKINIHYVKTEDQLADLGTKHLTKHRHRNFIKLINEF 390
            MLANAP+SF+ GLQG+TA STMEA+LV  AL MKEA+FCSNM+  LGF + F  +P+Y DNT+ LH  GNR++S R KHIAL +FF +ELV EGKI+IHY  TED LA +GTKH  KHR ++ +  IN F
Sbjct:   81 MLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYAPTEDNLAHIGTKHFNKHRFKHLMDRINNF 210          
BLAST of mRNA_H-elongata_contig197058.5498.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE)

HSP 1 Score: 173 bits (438), Expect = 1.190e-49
Identity = 82/130 (63.08%), Postives = 100/130 (76.92%), Query Frame = 1
Query:    1 MLANAPISFKVGLQGMTAQSTMEAKLVVEALTMKEALFCSNMILRLGFDESFGSVPLYIDNTSALHVAGNRAYSPRAKHIALGYFFAQELVEEGKINIHYVKTEDQLADLGTKHLTKHRHRNFIKLINEF 390
            MLANAP+SF+ GLQG+TA STMEA+LV  AL MKEA+FCSNM+  LGF + F  +P+Y DNT+ LH  GNR++S R KHIAL +FF +ELV EGKI+IHY  TED LAD+GTKH  KHR  + + LIN F
Sbjct:  306 MLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYFPTEDNLADIGTKHFNKHRFEHLMDLINNF 435          
BLAST of mRNA_H-elongata_contig197058.5498.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 175 bits (443), Expect = 3.530e-48
Identity = 82/130 (63.08%), Postives = 102/130 (78.46%), Query Frame = 1
Query:    1 MLANAPISFKVGLQGMTAQSTMEAKLVVEALTMKEALFCSNMILRLGFDESFGSVPLYIDNTSALHVAGNRAYSPRAKHIALGYFFAQELVEEGKINIHYVKTEDQLADLGTKHLTKHRHRNFIKLINEF 390
            MLANAP+SF+ GLQG+TA STMEA+LV  AL MKEA+FCSNM+  LGF + F  +P+Y DNT+ LH  GNR++S R KHIAL +FF +ELV EGKI+IHYV+TED LAD+GTKH   HR ++ + LIN F
Sbjct:  866 MLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVRTEDNLADIGTKHFNNHRFKHLMDLINNF 995          
BLAST of mRNA_H-elongata_contig197058.5498.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE)

HSP 1 Score: 170 bits (431), Expect = 3.310e-47
Identity = 81/128 (63.28%), Postives = 100/128 (78.12%), Query Frame = 1
Query:    1 MLANAPISFKVGLQGMTAQSTMEAKLVVEALTMKEALFCSNMILRLGFDESFGSVPLYIDNTSALHVAGNRAYSPRAKHIALGYFFAQELVEEGKINIHYVKTEDQLADLGTKHLTKHRHRNFIKLIN 384
            MLANAP+SF+ GLQG+TA STMEA+LV  AL MKEA+FCSNM+  LG  + F  +P+Y DNT+ LH  GNR++S R KHIAL +FF +ELV EGKI+IHYV TED LAD+GTKH  KHR ++ + LIN
Sbjct:  527 MLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGSGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHLMDLIN 654          
BLAST of mRNA_H-elongata_contig197058.5498.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 1.020e-45
Identity = 80/130 (61.54%), Postives = 100/130 (76.92%), Query Frame = 1
Query:    1 MLANAPISFKVGLQGMTAQSTMEAKLVVEALTMKEALFCSNMILRLGFDESFGSVPLYIDNTSALHVAGNRAYSPRAKHIALGYFFAQELVEEGKINIHYVKTEDQLADLGTKHLTKHRHRNFIKLINEF 390
            +LANAP+SF+ GLQG+TA STMEA+LV  AL M EA+F SNM+  LGF + F  +P+Y DNT+ LH  GNR++S R KHIAL +FF +ELV EGKI+IHYV TED LAD+GTKH  KHR ++ + LIN F
Sbjct: 1535 VLANAPMSFRSGLQGLTAMSTMEAELVASALAMNEAVFFSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHLMDLINNF 1664          
BLAST of mRNA_H-elongata_contig197058.5498.1 vs. uniprot
Match: A0A6H5K129_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K129_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 1.950e-43
Identity = 72/128 (56.25%), Postives = 98/128 (76.56%), Query Frame = 1
Query:    1 MLANAPISFKVGLQGMTAQSTMEAKLVVEALTMKEALFCSNMILRLGFDESFGSVPLYIDNTSALHVAGNRAYSPRAKHIALGYFFAQELVEEGKINIHYVKTEDQLADLGTKHLTKHRHRNFIKLIN 384
            ML NAP+SFK G+QG TA STMEA+L+  AL MKEA+FCSN++  LG  + F  VPLY DNT+ LH  GNR++S R KHIAL +F+ +EL+ EG+I+IHY+ T+  +AD+GTKHL KHR ++ + +I+
Sbjct: 1036 MLGNAPVSFKSGIQGPTAMSTMEAELIASALAMKEAVFCSNILTELGLGKEFAQVPLYCDNTATLHALGNRSFSSRTKHIALRFFYIRELISEGRISIHYIPTDSNIADIGTKHLNKHRLKHLLDIIS 1163          
BLAST of mRNA_H-elongata_contig197058.5498.1 vs. uniprot
Match: A0A6H5J9N2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9N2_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 1.490e-42
Identity = 74/132 (56.06%), Postives = 96/132 (72.73%), Query Frame = 1
Query:    1 MLANAPISFKVGLQGMTAQSTMEAKLVVEALTMKEALFCSNMILRLGFDESFGSVPLYIDNTSALHVAGNRAYSPRAKHIALGYFFAQELVEEGKINIHYVKTEDQLADLGTKHLTKHRHRNFIKLINEFKA 396
            ML +A ++FK GLQ +TAQSTMEA+LV  AL MKEA+FCSN++  LGF + F  VPLY DNT+ LH  GNR++S R KHIAL +FF ++LV EGKI IH+V T+   AD+GTKHL K R ++ + +I  F  
Sbjct:  224 MLYDALMAFKSGLQSLTAQSTMEAELVAAALAMKEAVFCSNILTELGFGKEFAQVPLYCDNTATLHSLGNRSHSSRTKHIALRFFFIRDLVSEGKIFIHFVPTDSNPADIGTKHLNKDRFQHLLNMIKNFNV 355          
BLAST of mRNA_H-elongata_contig197058.5498.1 vs. uniprot
Match: A0A6H5KBU1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU1_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 6.960e-41
Identity = 73/129 (56.59%), Postives = 97/129 (75.19%), Query Frame = 1
Query:    1 MLANAPISFKVGLQGMTAQSTMEAKLVVEALTMKEALFCSNMILRLGFDESFGSVPLYIDNTSALHVAGNRAYSPRAKHIALGYFFAQELVEEGKINIHYVKTEDQLADLGTKHLTKHRHRNFIKLINE 387
            M++ AP+SFK GLQ +TA ST+EA+LV  AL MKE +FC+NM+  LGF   F S PLYI NT+ LHV GN+ +S R KH+AL +F+ +E+V+EG+I+IHY+ TED LAD+GTKHL K RH+  I  I +
Sbjct:  560 MMSKAPVSFKFGLQSLTAMSTLEAELVAAALAMKETIFCTNMMKELGFGSEFRSAPLYI-NTATLHVIGNQTFSGRTKHVALRFFYIREIVKEGRISIHYIPTEDNLADIGTKHLNKQRHQCLIDKIKK 687          
BLAST of mRNA_H-elongata_contig197058.5498.1 vs. uniprot
Match: A0A6H5KC00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC00_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 9.650e-41
Identity = 72/130 (55.38%), Postives = 96/130 (73.85%), Query Frame = 1
Query:   10 NAPISFKVGLQGMTAQSTMEAKLVVEALTMKEALFCSNMILRLGFDESFGSVPLYIDNTSALHVAGNRA-YSPRAKHIALGYFFAQELVEEGKINIHYVKTEDQLADLGTKHLTKHRHRNFIKLINEFKA 396
            NA +SFK G+QG TA STMEA+L+  AL MKEA+FCSN++  LGF + F  VPLY DNT+ LH  GNR+ +S R KHIAL +F+ +ELV EG+I+IHY+ T+   AD+GTKHL KHR ++ + +I+ F  
Sbjct:  850 NASVSFKSGIQGPTAMSTMEAELIASALAMKEAVFCSNILTELGFGKEFAQVPLYCDNTATLHALGNRSSFSSRTKHIALRFFYIRELVSEGRISIHYIPTDSNPADIGTKHLNKHRLKHLLDIISSFNV 979          
BLAST of mRNA_H-elongata_contig197058.5498.1 vs. uniprot
Match: A0A6H5JBV6_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV6_9PHAE)

HSP 1 Score: 153 bits (386), Expect = 1.800e-40
Identity = 72/132 (54.55%), Postives = 96/132 (72.73%), Query Frame = 1
Query:    1 MLANAPISFKVGLQGMTAQSTMEAKLVVEALTMKEALFCSNMILRLGFDESFGSVPLYIDNTSALHVAGNRAYSPRAKHIALGYFFAQELVEEGKINIHYVKTEDQLADLGTKHLTKHRHRNFIKLINEFKA 396
            ML +AP+S K G+QG  A STMEA+L+  AL MKEA+FCSNM+  LGF + F  VPLY DNT+ LH  GNR++S R  HIAL +F+ +ELV EG+I+IHYV T+  LAD+GTK+L KH  ++ + +I+ F  
Sbjct: 1064 MLEHAPVSLKSGIQGPAAISTMEAELIASALAMKEAVFCSNMLTELGFGKEFAQVPLYCDNTATLHALGNRSFSSRENHIALRFFYIRELVLEGRISIHYVPTDSNLADIGTKYLNKHWLKHLLDIISSFNV 1195          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig197058.5498.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KMK0_9PHAE1.310e-5061.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5U2_9PHAE1.190e-4963.08Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KNH5_9PHAE3.530e-4863.08Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JME8_9PHAE3.310e-4763.28Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KJH6_9PHAE1.020e-4561.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K129_9PHAE1.950e-4356.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J9N2_9PHAE1.490e-4256.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBU1_9PHAE6.960e-4156.59CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KC00_9PHAE9.650e-4155.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBV6_9PHAE1.800e-4054.55Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig197058contigH-elongata_contig197058:704..1102 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score82.8
Seed ortholog evalue1.3e-13
Seed eggNOG ortholog1108849.XP_002556819.1
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs20PDK@147545,38DPC@33154,3NUZ7@4751,3QNZW@4890,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelEurotiomycetes
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size399
Cds size399
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930115.5391753-CDS-H-elongata_contig197058:703..11021622930115.5391753-CDS-H-elongata_contig197058:703..1102Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig197058 704..1102 +
1691679286.489977-CDS-H-elongata_contig197058:703..11021691679286.489977-CDS-H-elongata_contig197058:703..1102Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig197058 704..1102 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig197058.5498.1prot_H-elongata_contig197058.5498.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig197058 704..1102 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig197058.5498.1

>prot_H-elongata_contig197058.5498.1 ID=prot_H-elongata_contig197058.5498.1|Name=mRNA_H-elongata_contig197058.5498.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=133bp
MLANAPISFKVGLQGMTAQSTMEAKLVVEALTMKEALFCSNMILRLGFDE
SFGSVPLYIDNTSALHVAGNRAYSPRAKHIALGYFFAQELVEEGKINIHY
VKTEDQLADLGTKHLTKHRHRNFIKLINEFKA*
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mRNA from alignment at H-elongata_contig197058:704..1102+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig197058.5498.1 ID=mRNA_H-elongata_contig197058.5498.1|Name=mRNA_H-elongata_contig197058.5498.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=399bp|location=Sequence derived from alignment at H-elongata_contig197058:704..1102+ (Himanthalia elongata Himel1 dioecious)
ATGCTGGCTAACGCCCCGATCAGCTTCAAAGTGGGACTGCAGGGGATGAC CGCACAGTCCACTATGGAGGCAAAGCTCGTGGTGGAAGCTCTGACAATGA AGGAGGCGTTGTTCTGTTCCAACATGATTCTGAGGCTTGGCTTCGATGAG AGCTTCGGCAGCGTGCCGCTGTACATCGACAACACGTCGGCACTGCACGT CGCCGGCAACCGCGCCTACAGCCCTCGTGCAAAGCACATCGCGCTGGGGT ATTTTTTCGCGCAAGAGCTGGTAGAGGAGGGCAAGATAAACATCCACTAC GTCAAGACCGAGGATCAGCTGGCGGACTTGGGCACTAAGCACCTTACCAA GCACCGTCATCGCAACTTCATCAAGCTCATCAACGAGTTCAAGGCTTAA
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Coding sequence (CDS) from alignment at H-elongata_contig197058:704..1102+

>mRNA_H-elongata_contig197058.5498.1 ID=mRNA_H-elongata_contig197058.5498.1|Name=mRNA_H-elongata_contig197058.5498.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=798bp|location=Sequence derived from alignment at H-elongata_contig197058:704..1102+ (Himanthalia elongata Himel1 dioecious)
ATGCTGGCTAACGCCCCGATCAGCTTCAAAGTGGGACTGCAGGGGATGAC
CGCACAGTCCACTATGGAGGCAAAGCTCGTGGTGGAAGCTCTGACAATGA
AGGAGGCGTTGTTCTGTTCCAACATGATTCTGAGGCTTGGCTTCGATGAG
AGCTTCGGCAGCGTGCCGCTGTACATCGACAACACGTCGGCACTGCACGT
CGCCGGCAACCGCGCCTACAGCCCTCGTGCAAAGCACATCGCGCTGGGGT
ATTTTTTCGCGCAAGAGCTGGTAGAGGAGGGCAAGATAAACATCCACTAC
GTCAAGACCGAGGATCAGCTGGCGGACTTGGGCACTAAGCACCTTACCAA
GCACCGTCATCGCAACTTCATCAAGCTCATCAACGAGTTCAAGGCTTAAA
TGCTGGCTAACGCCCCGATCAGCTTCAAAGTGGGACTGCAGGGGATGACC
GCACAGTCCACTATGGAGGCAAAGCTCGTGGTGGAAGCTCTGACAATGAA
GGAGGCGTTGTTCTGTTCCAACATGATTCTGAGGCTTGGCTTCGATGAGA
GCTTCGGCAGCGTGCCGCTGTACATCGACAACACGTCGGCACTGCACGTC
GCCGGCAACCGCGCCTACAGCCCTCGTGCAAAGCACATCGCGCTGGGGTA
TTTTTTCGCGCAAGAGCTGGTAGAGGAGGGCAAGATAAACATCCACTACG
TCAAGACCGAGGATCAGCTGGCGGACTTGGGCACTAAGCACCTTACCAAG
CACCGTCATCGCAACTTCATCAAGCTCATCAACGAGTTCAAGGCTTAA
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