mRNA_H-elongata_contig19705.5497.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19705.5497.1
Unique NamemRNA_H-elongata_contig19705.5497.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig19705.5497.1 vs. uniprot
Match: A0A6H5JXR4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXR4_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 8.520e-34
Identity = 59/80 (73.75%), Postives = 67/80 (83.75%), Query Frame = 1 
Query:   10 TKQLPDQNEELRDTLFSALYGSMVMFDTHDNAHEYQKKCKQKGKIGLPILVSEDGASLERNGYMPPTKDPDSLNKLKTVY 249
            ++ LP+  E LRDTLFSALYGS+VMFDTHDNAH YQ +CK+ G   LPILV EDGASLERNGYMPP KDPDSLN+L+ VY
Sbjct: 2123 SEALPEDQEHLRDTLFSALYGSVVMFDTHDNAHAYQVRCKKVGTFSLPILVEEDGASLERNGYMPPAKDPDSLNRLRIVY 2202
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BLAST of mRNA_H-elongata_contig19705.5497.1 vs. uniprot
Match: D8LFL4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFL4_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 8.600e-25
Identity = 44/56 (78.57%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:   82 MFDTHDNAHEYQKKCKQKGKIGLPILVSEDGASLERNGYMPPTKDPDSLNKLKTVY 249
            MFDTHDNAH YQ +CK+ G   LPILV EDGASLERNGYMPP KDPDSLN+LK VY
Sbjct:    1 MFDTHDNAHAYQVRCKKVGTFSLPILVEEDGASLERNGYMPPAKDPDSLNRLKIVY 56
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BLAST of mRNA_H-elongata_contig19705.5497.1 vs. uniprot
Match: D7FYN3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYN3_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 3.560e-15
Identity = 41/79 (51.90%), Postives = 49/79 (62.03%), Query Frame = 1 
Query:   13 KQLPDQNEELRDTLFSALYGSMVMFDTHDNAHEYQKKCKQKGKIGLPILVSEDGASLERNGYMPPTKDPDSLNKLKTVY 249
            K+L D++E LR TLF ALYG MVMFDT+ NA +YQ     +G     ILV EDG  L RNGYM   K  + L KL  V+
Sbjct:   26 KELKDEDEGLRGTLFWALYGDMVMFDTYANAIKYQDGLN-RGDKRRDILVEEDGTLLRRNGYMDVPKGTEGLKKLPIVF 103
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19705.5497.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JXR4_9PHAE8.520e-3473.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFL4_ECTSI8.600e-2578.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FYN3_ECTSI3.560e-1551.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19705contigH-elongata_contig19705:527..1640 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size249
Cds size249
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930115.457811-CDS-H-elongata_contig19705:526..5921622930115.457811-CDS-H-elongata_contig19705:526..592Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19705 527..592 -
1691679286.4711175-CDS-H-elongata_contig19705:526..5921691679286.4711175-CDS-H-elongata_contig19705:526..592Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19705 527..592 -
1622930115.4744895-CDS-H-elongata_contig19705:1457..16401622930115.4744895-CDS-H-elongata_contig19705:1457..1640Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19705 1458..1640 -
1691679286.4799523-CDS-H-elongata_contig19705:1457..16401691679286.4799523-CDS-H-elongata_contig19705:1457..1640Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19705 1458..1640 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19705.5497.1prot_H-elongata_contig19705.5497.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19705 527..1640 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19705.5497.1

>prot_H-elongata_contig19705.5497.1 ID=prot_H-elongata_contig19705.5497.1|Name=mRNA_H-elongata_contig19705.5497.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=83bp
VIPTKQLPDQNEELRDTLFSALYGSMVMFDTHDNAHEYQKKCKQKGKIGL
PILVSEDGASLERNGYMPPTKDPDSLNKLKTVY
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mRNA from alignment at H-elongata_contig19705:527..1640-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19705.5497.1 ID=mRNA_H-elongata_contig19705.5497.1|Name=mRNA_H-elongata_contig19705.5497.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1114bp|location=Sequence derived from alignment at H-elongata_contig19705:527..1640- (Himanthalia elongata Himel1 dioecious)
GTAATCCCCACCAAACAGCTGCCGGACCAGAACGAGGAGCTGCGAGACAC
GCTCTTCAGCGCGCTATACGGCTCGATGGTGATGTTCGATACCCACGACA
ACGCTCACGAGTACCAGAAGAAGTGCAAGCAGAAGGGCAAGATTGGTCTC
CCGATCCTCGTGAGCGAGGACGGGGCCTCGCTGGTGAGAGAAAATAAATA
AATACTTCGTATATATATATATATATAGTGGCCTACCTAGCGCAGTCCAC
GGCTCGGGATCCAGCGTCTGATCTGCCCCTGGGAGCTCAAACAACACGCC
AAGCGATTGCGTGTCTTCGTCGTTATTTCTGTTGTTCCAATGTCTCGATT
GGTTGTTTGGAGTGGAGGATTTCCCATGATAAAGATGCATGTCTGGTTCC
GGGTTGAGGAGGCGCAAGAGCGAAAGTGAAATAAACAACCAGTTCTGCTG
CGCGCGGCGCGCCTATTAACACCCATGGGTATTTACGTCGAACCACCATA
CATATTTTATTATAGTTATCTATAATCAGCAAAATATGGCGATATTTCAT
ACATGTCAAGATAATTGGTGGACCCAACCCGACCCTAACCCAAACCCATG
CCCAAATAAAAAGTCATACTATTTTGCTGATTATAGATAAAAAGAAGAAA
CTGAGGTCTGGGGTGGTGGTTCGACGTAAACACCCATGTTGTGTAAGGGC
GGGTATCAACGGGGTTACAAAAGTTTAAATTCCAGCTGATTAATATTTAA
ACCGGGCTCTGATTGGACGAAGGCTAGGAGTTATTTAGCTTTCGACCAAT
CAGAGCTCGATTTTTATTTAAATCGGCTGGAAATTTTAAGTTTTGTATTC
CGATAAGACCCGGCCTAAACAGGCGCGCCCTGCTGCGGGCGGTTGCTATC
ATCGTTGCGTGTTTTTTTGTAATGGTGGGCAGGGGAGAGGGGTTACATCG
TGCTCCCTCTTCTTTGTGGCATGTTATGTGTCAAGAAGAACGTTGCCGTA
TTTGTCGCCCCTCGTCCCTAAAAACTACCAACATGAACAATGAAATAGGA
ACGGAACGGGTACATGCCTCCGACCAAGGATCCCGACAGCCTGAACAAGC
TCAAGACGGTGTAC
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Coding sequence (CDS) from alignment at H-elongata_contig19705:527..1640-

>mRNA_H-elongata_contig19705.5497.1 ID=mRNA_H-elongata_contig19705.5497.1|Name=mRNA_H-elongata_contig19705.5497.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=498bp|location=Sequence derived from alignment at H-elongata_contig19705:527..1640- (Himanthalia elongata Himel1 dioecious)
GTAATCCCCACCAAACAGCTGCCGGACCAGAACGAGGAGCTGCGAGACAC
GCTCTTCAGCGCGCTATACGGCTCGATGGTGATGTTCGATACCCACGACA
ACGCTCACGAGTACCAGAAGAAGTGCAAGCAGAAGGGCAAGATTGGTCTC
CCGATCCTCGTGAGCGAGGACGGGGCCTCGCTGGTAATCCCCACCAAACA
GCTGCCGGACCAGAACGAGGAGCTGCGAGACACGCTCTTCAGCGCGCTAT
ACGGCTCGATGGTGATGTTCGATACCCACGACAACGCTCACGAGTACCAG
AAGAAGTGCAAGCAGAAGGGCAAGATTGGTCTCCCGATCCTCGTGAGCGA
GGACGGGGCCTCGCTGGAACGGAACGGGTACATGCCTCCGACCAAGGATC
CCGACAGCCTGAACAAGCTCAAGACGGTGTACGAACGGAACGGGTACATG
CCTCCGACCAAGGATCCCGACAGCCTGAACAAGCTCAAGACGGTGTAC
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