mRNA_H-elongata_contig197008.5495.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig197008.5495.1 vs. uniprot
Match: D7FZ22_ECTSI (Putative zinc-protease albF n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ22_ECTSI) HSP 1 Score: 71.6 bits (174), Expect = 1.170e-13 Identity = 30/44 (68.18%), Postives = 38/44 (86.36%), Query Frame = 1
Query: 1 GDWKMGLGWGGSKIGYFYGGATIQGLMAYFYHVVAPGTAVELNR 132
GDWK+G GW S IGYFYGGATIQGL+AY+Y+++APG A E++R
Sbjct: 215 GDWKVGPGWRRSHIGYFYGGATIQGLLAYYYNIIAPGNATEVDR 258
BLAST of mRNA_H-elongata_contig197008.5495.1 vs. uniprot
Match: A0A482SAB1_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SAB1_9ARCH) HSP 1 Score: 55.8 bits (133), Expect = 7.750e-8 Identity = 25/37 (67.57%), Postives = 28/37 (75.68%), Query Frame = 1
Query: 22 GWGGSKIGYFYGGATIQGLMAYFYHVVAPGTAVELNR 132
GWGGS IG F+GG TIQG+M YFYHV+ G ELNR
Sbjct: 236 GWGGSHIGNFWGGQTIQGIMPYFYHVIHNGDGEELNR 272
BLAST of mRNA_H-elongata_contig197008.5495.1 vs. uniprot
Match: B7G703_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G703_PHATC) HSP 1 Score: 55.1 bits (131), Expect = 1.450e-7 Identity = 25/46 (54.35%), Postives = 36/46 (78.26%), Query Frame = 1
Query: 1 GDWKMGLGWGGSKIGYFYGGATIQGLMAYFYHVVAPGTAVELNRQV 138
GD++ G GWGG K+G F+G T QG+++Y+Y+V+ PG A+ELNR V
Sbjct: 242 GDFRDGQGWGG-KVGPFHGSMTFQGIISYYYNVLHPGQAIELNRCV 286
BLAST of mRNA_H-elongata_contig197008.5495.1 vs. uniprot
Match: A0A448YVT8_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YVT8_9STRA) HSP 1 Score: 52.8 bits (125), Expect = 9.530e-7 Identity = 25/44 (56.82%), Postives = 32/44 (72.73%), Query Frame = 1
Query: 1 GDWKMGLGWGGSKIGYFYGGATIQGLMAYFYHVVAPGTAVELNR 132
GD+ + GWG K+G FYGG TIQGL+ Y+Y + PG +VELNR
Sbjct: 304 GDYHVKRGWG-KKVGPFYGGMTIQGLLPYYYQWLHPGRSVELNR 346
BLAST of mRNA_H-elongata_contig197008.5495.1 vs. uniprot
Match: A0A7S1UJ30_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UJ30_9STRA) HSP 1 Score: 52.4 bits (124), Expect = 1.300e-6 Identity = 20/40 (50.00%), Postives = 32/40 (80.00%), Query Frame = 1
Query: 10 KMGLGWGGSKIGYFYGGATIQGLMAYFYHVVAPGTAVELN 129
K G+ W G++IGY++GG T+QGL+ Y+Y V APG ++E++
Sbjct: 227 KKGIAWKGTRIGYYWGGRTVQGLLPYYYTVEAPGESLEVD 266
BLAST of mRNA_H-elongata_contig197008.5495.1 vs. uniprot
Match: A0A7S3HGE2_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HGE2_9STRA) HSP 1 Score: 52.0 bits (123), Expect = 1.780e-6 Identity = 23/37 (62.16%), Postives = 29/37 (78.38%), Query Frame = 1
Query: 22 GWGGSKIGYFYGGATIQGLMAYFYHVVAPGTAVELNR 132
GW GS IG F+GG TIQG+M Y+Y++V P A+ELNR
Sbjct: 270 GWEGSHIGNFWGGQTIQGIMPYYYNIVHPERALELNR 306
BLAST of mRNA_H-elongata_contig197008.5495.1 vs. uniprot
Match: A0A7S4AYQ1_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AYQ1_9STRA) HSP 1 Score: 52.0 bits (123), Expect = 1.780e-6 Identity = 24/44 (54.55%), Postives = 33/44 (75.00%), Query Frame = 1
Query: 1 GDWKMGLGWGGSKIGYFYGGATIQGLMAYFYHVVAPGTAVELNR 132
GD+ + GWG SK+G FYGG TIQGL+ +++ + PG +VELNR
Sbjct: 285 GDYNIKSGWG-SKVGPFYGGMTIQGLLPWYFQYLHPGKSVELNR 327
BLAST of mRNA_H-elongata_contig197008.5495.1 vs. uniprot
Match: A0A7S2S9G4_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2S9G4_9STRA) HSP 1 Score: 51.6 bits (122), Expect = 2.430e-6 Identity = 21/43 (48.84%), Postives = 33/43 (76.74%), Query Frame = 1
Query: 1 GDWKMGLGWGGSKIGYFYGGATIQGLMAYFYHVVAPGTAVELN 129
GD++ G GWGG+ IG+ +GG T+QGL++Y+Y++V+ G LN
Sbjct: 238 GDFQPGTGWGGTGIGWCWGGQTVQGLVSYYYNLVSKGNGKALN 280
BLAST of mRNA_H-elongata_contig197008.5495.1 vs. uniprot
Match: R1CNT5_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CNT5_EMIHU) HSP 1 Score: 50.8 bits (120), Expect = 4.530e-6 Identity = 26/49 (53.06%), Postives = 34/49 (69.39%), Query Frame = 1
Query: 1 GDWKMGLGWGGSKIGYFYGGATIQGLMAYFYHVVAPGTAV---ELNRQV 138
GD++ G GWGGS IG+F+GG T+QGL+ Y+Y V A V EL+R V
Sbjct: 209 GDFRPGSGWGGSNIGHFWGGVTVQGLLPYYYTVRADRRRVSGMELDRCV 257
BLAST of mRNA_H-elongata_contig197008.5495.1 vs. uniprot
Match: A0A7R9WYF7_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WYF7_9STRA) HSP 1 Score: 49.3 bits (116), Expect = 1.320e-5 Identity = 21/44 (47.73%), Postives = 31/44 (70.45%), Query Frame = 1
Query: 1 GDWKMGLGWGGSKIGYFYGGATIQGLMAYFYHVVAPGTAVELNR 132
G +++ GWGG+ G + G +QGLMAY+Y ++ P TAVELN+
Sbjct: 33 GGFQLANGWGGAGYGGYVGSMAMQGLMAYYYDMIRPNTAVELNQ 76 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig197008.5495.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig197008.5495.1 >prot_H-elongata_contig197008.5495.1 ID=prot_H-elongata_contig197008.5495.1|Name=mRNA_H-elongata_contig197008.5495.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=42bp MGLGWGGSKIGYFYGGATIQGLMAYFYHVVAPGTAVELNRQVback to top mRNA from alignment at H-elongata_contig197008:293..430+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig197008.5495.1 ID=mRNA_H-elongata_contig197008.5495.1|Name=mRNA_H-elongata_contig197008.5495.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=138bp|location=Sequence derived from alignment at H-elongata_contig197008:293..430+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig197008:293..430+ >mRNA_H-elongata_contig197008.5495.1 ID=mRNA_H-elongata_contig197008.5495.1|Name=mRNA_H-elongata_contig197008.5495.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=252bp|location=Sequence derived from alignment at H-elongata_contig197008:293..430+ (Himanthalia elongata Himel1 dioecious)back to top |