mRNA_H-elongata_contig197008.5495.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig197008.5495.1
Unique NamemRNA_H-elongata_contig197008.5495.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig197008.5495.1 vs. uniprot
Match: D7FZ22_ECTSI (Putative zinc-protease albF n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ22_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 1.170e-13
Identity = 30/44 (68.18%), Postives = 38/44 (86.36%), Query Frame = 1
Query:    1 GDWKMGLGWGGSKIGYFYGGATIQGLMAYFYHVVAPGTAVELNR 132
            GDWK+G GW  S IGYFYGGATIQGL+AY+Y+++APG A E++R
Sbjct:  215 GDWKVGPGWRRSHIGYFYGGATIQGLLAYYYNIIAPGNATEVDR 258          
BLAST of mRNA_H-elongata_contig197008.5495.1 vs. uniprot
Match: A0A482SAB1_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SAB1_9ARCH)

HSP 1 Score: 55.8 bits (133), Expect = 7.750e-8
Identity = 25/37 (67.57%), Postives = 28/37 (75.68%), Query Frame = 1
Query:   22 GWGGSKIGYFYGGATIQGLMAYFYHVVAPGTAVELNR 132
            GWGGS IG F+GG TIQG+M YFYHV+  G   ELNR
Sbjct:  236 GWGGSHIGNFWGGQTIQGIMPYFYHVIHNGDGEELNR 272          
BLAST of mRNA_H-elongata_contig197008.5495.1 vs. uniprot
Match: B7G703_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G703_PHATC)

HSP 1 Score: 55.1 bits (131), Expect = 1.450e-7
Identity = 25/46 (54.35%), Postives = 36/46 (78.26%), Query Frame = 1
Query:    1 GDWKMGLGWGGSKIGYFYGGATIQGLMAYFYHVVAPGTAVELNRQV 138
            GD++ G GWGG K+G F+G  T QG+++Y+Y+V+ PG A+ELNR V
Sbjct:  242 GDFRDGQGWGG-KVGPFHGSMTFQGIISYYYNVLHPGQAIELNRCV 286          
BLAST of mRNA_H-elongata_contig197008.5495.1 vs. uniprot
Match: A0A448YVT8_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YVT8_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 9.530e-7
Identity = 25/44 (56.82%), Postives = 32/44 (72.73%), Query Frame = 1
Query:    1 GDWKMGLGWGGSKIGYFYGGATIQGLMAYFYHVVAPGTAVELNR 132
            GD+ +  GWG  K+G FYGG TIQGL+ Y+Y  + PG +VELNR
Sbjct:  304 GDYHVKRGWG-KKVGPFYGGMTIQGLLPYYYQWLHPGRSVELNR 346          
BLAST of mRNA_H-elongata_contig197008.5495.1 vs. uniprot
Match: A0A7S1UJ30_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UJ30_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 1.300e-6
Identity = 20/40 (50.00%), Postives = 32/40 (80.00%), Query Frame = 1
Query:   10 KMGLGWGGSKIGYFYGGATIQGLMAYFYHVVAPGTAVELN 129
            K G+ W G++IGY++GG T+QGL+ Y+Y V APG ++E++
Sbjct:  227 KKGIAWKGTRIGYYWGGRTVQGLLPYYYTVEAPGESLEVD 266          
BLAST of mRNA_H-elongata_contig197008.5495.1 vs. uniprot
Match: A0A7S3HGE2_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HGE2_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 1.780e-6
Identity = 23/37 (62.16%), Postives = 29/37 (78.38%), Query Frame = 1
Query:   22 GWGGSKIGYFYGGATIQGLMAYFYHVVAPGTAVELNR 132
            GW GS IG F+GG TIQG+M Y+Y++V P  A+ELNR
Sbjct:  270 GWEGSHIGNFWGGQTIQGIMPYYYNIVHPERALELNR 306          
BLAST of mRNA_H-elongata_contig197008.5495.1 vs. uniprot
Match: A0A7S4AYQ1_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AYQ1_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 1.780e-6
Identity = 24/44 (54.55%), Postives = 33/44 (75.00%), Query Frame = 1
Query:    1 GDWKMGLGWGGSKIGYFYGGATIQGLMAYFYHVVAPGTAVELNR 132
            GD+ +  GWG SK+G FYGG TIQGL+ +++  + PG +VELNR
Sbjct:  285 GDYNIKSGWG-SKVGPFYGGMTIQGLLPWYFQYLHPGKSVELNR 327          
BLAST of mRNA_H-elongata_contig197008.5495.1 vs. uniprot
Match: A0A7S2S9G4_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2S9G4_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 2.430e-6
Identity = 21/43 (48.84%), Postives = 33/43 (76.74%), Query Frame = 1
Query:    1 GDWKMGLGWGGSKIGYFYGGATIQGLMAYFYHVVAPGTAVELN 129
            GD++ G GWGG+ IG+ +GG T+QGL++Y+Y++V+ G    LN
Sbjct:  238 GDFQPGTGWGGTGIGWCWGGQTVQGLVSYYYNLVSKGNGKALN 280          
BLAST of mRNA_H-elongata_contig197008.5495.1 vs. uniprot
Match: R1CNT5_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CNT5_EMIHU)

HSP 1 Score: 50.8 bits (120), Expect = 4.530e-6
Identity = 26/49 (53.06%), Postives = 34/49 (69.39%), Query Frame = 1
Query:    1 GDWKMGLGWGGSKIGYFYGGATIQGLMAYFYHVVAPGTAV---ELNRQV 138
            GD++ G GWGGS IG+F+GG T+QGL+ Y+Y V A    V   EL+R V
Sbjct:  209 GDFRPGSGWGGSNIGHFWGGVTVQGLLPYYYTVRADRRRVSGMELDRCV 257          
BLAST of mRNA_H-elongata_contig197008.5495.1 vs. uniprot
Match: A0A7R9WYF7_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WYF7_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 1.320e-5
Identity = 21/44 (47.73%), Postives = 31/44 (70.45%), Query Frame = 1
Query:    1 GDWKMGLGWGGSKIGYFYGGATIQGLMAYFYHVVAPGTAVELNR 132
            G +++  GWGG+  G + G   +QGLMAY+Y ++ P TAVELN+
Sbjct:   33 GGFQLANGWGGAGYGGYVGSMAMQGLMAYYYDMIRPNTAVELNQ 76          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig197008.5495.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D7FZ22_ECTSI1.170e-1368.18Putative zinc-protease albF n=1 Tax=Ectocarpus sil... [more]
A0A482SAB1_9ARCH7.750e-867.57Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
B7G703_PHATC1.450e-754.35Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A448YVT8_9STRA9.530e-756.82Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S1UJ30_9STRA1.300e-650.00Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S3HGE2_9STRA1.780e-662.16Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S4AYQ1_9STRA1.780e-654.55Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A7S2S9G4_9STRA2.430e-648.84Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
R1CNT5_EMIHU4.530e-653.06Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
A0A7R9WYF7_9STRA1.320e-547.73Hypothetical protein n=1 Tax=Craspedostauros austr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig197008contigH-elongata_contig197008:293..430 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.5
Seed ortholog evalue2.2e-07
Seed eggNOG ortholog2880.D7FZ22
EggNOG OGs2B6VE@1,2S0N3@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size138
Cds size126
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930115.3584507-UTR-H-elongata_contig197008:292..3041622930115.3584507-UTR-H-elongata_contig197008:292..304Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig197008 293..304 +
1691679286.4360757-UTR-H-elongata_contig197008:292..3041691679286.4360757-UTR-H-elongata_contig197008:292..304Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig197008 293..304 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930115.372678-CDS-H-elongata_contig197008:304..4301622930115.372678-CDS-H-elongata_contig197008:304..430Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig197008 305..430 +
1691679286.4478064-CDS-H-elongata_contig197008:304..4301691679286.4478064-CDS-H-elongata_contig197008:304..430Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig197008 305..430 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig197008.5495.1prot_H-elongata_contig197008.5495.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig197008 305..430 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig197008.5495.1

>prot_H-elongata_contig197008.5495.1 ID=prot_H-elongata_contig197008.5495.1|Name=mRNA_H-elongata_contig197008.5495.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=42bp
MGLGWGGSKIGYFYGGATIQGLMAYFYHVVAPGTAVELNRQV
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mRNA from alignment at H-elongata_contig197008:293..430+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig197008.5495.1 ID=mRNA_H-elongata_contig197008.5495.1|Name=mRNA_H-elongata_contig197008.5495.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=138bp|location=Sequence derived from alignment at H-elongata_contig197008:293..430+ (Himanthalia elongata Himel1 dioecious)
GGGGACTGGAAGATGGGGTTGGGGTGGGGCGGGAGCAAGATCGGCTACTT TTACGGAGGGGCCACCATCCAGGGACTGATGGCGTACTTCTATCACGTGG TCGCTCCCGGCACGGCCGTCGAATTGAACAGGCAAGTA
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Coding sequence (CDS) from alignment at H-elongata_contig197008:293..430+

>mRNA_H-elongata_contig197008.5495.1 ID=mRNA_H-elongata_contig197008.5495.1|Name=mRNA_H-elongata_contig197008.5495.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=252bp|location=Sequence derived from alignment at H-elongata_contig197008:293..430+ (Himanthalia elongata Himel1 dioecious)
ATGGGGTTGGGGTGGGGCGGGAGCAAGATCGGCTACTTTTACGGAGGGGC
CACCATCCAGGGACTGATGGCGTACTTCTATCACGTGGTCGCTCCCGGCA
CGGCCGTCGAATTGAACAGGCAAGTAATGGGGTTGGGGTGGGGCGGGAGC
AAGATCGGCTACTTTTACGGAGGGGCCACCATCCAGGGACTGATGGCGTA
CTTCTATCACGTGGTCGCTCCCGGCACGGCCGTCGAATTGAACAGGCAAG
TA
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