mRNA_H-elongata_contig196869.5490.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig196869.5490.1
Unique NamemRNA_H-elongata_contig196869.5490.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig196869.5490.1 vs. uniprot
Match: D8LK85_ECTSI (Protein-serine/threonine kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LK85_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 1.330e-21
Identity = 46/49 (93.88%), Postives = 48/49 (97.96%), Query Frame = 1
Query:    1 QRHRIDRILDSFFISRISLRFLVDTYISSKANKPGFSGVIQSECSPVMV 147
            QRHRIDRILD+FFISRISLRFLVDTYISSK NKPGFSGVI+SECSPVMV
Sbjct:  443 QRHRIDRILDNFFISRISLRFLVDTYISSKKNKPGFSGVIESECSPVMV 491          
BLAST of mRNA_H-elongata_contig196869.5490.1 vs. uniprot
Match: A0A836CJJ3_9STRA (Protein-serine/threonine kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJJ3_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.870e-14
Identity = 32/49 (65.31%), Postives = 45/49 (91.84%), Query Frame = 1
Query:    1 QRHRIDRILDSFFISRISLRFLVDTYISSKANKPGFSGVIQSECSPVMV 147
            ++HR+D+IL+SFF+SRI+LRFL++ YI+SK ++PGF G+IQSECSPV V
Sbjct:  150 EQHRVDQILNSFFLSRIALRFLIEQYIASKRHRPGFRGMIQSECSPVEV 198          
BLAST of mRNA_H-elongata_contig196869.5490.1 vs. uniprot
Match: A0A7S3YBE1_HETAK (Protein-serine/threonine kinase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YBE1_HETAK)

HSP 1 Score: 57.8 bits (138), Expect = 1.680e-8
Identity = 23/46 (50.00%), Postives = 38/46 (82.61%), Query Frame = 1
Query:    1 QRHRIDRILDSFFISRISLRFLVDTYISSKANKPGFSGVIQSECSP 138
            +R +I+  LD FF+SR+SLRFL++ YI+++  +PGF+G+ Q++CSP
Sbjct:  203 RRGQINAALDHFFLSRVSLRFLMEHYIAARRPRPGFNGIFQTDCSP 248          
BLAST of mRNA_H-elongata_contig196869.5490.1 vs. uniprot
Match: A0A3M6VCB2_9STRA (Protein-serine/threonine kinase n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VCB2_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 5.790e-7
Identity = 22/41 (53.66%), Postives = 33/41 (80.49%), Query Frame = 1
Query:   25 LDSFFISRISLRFLVDTYISSKANKPGFSGVIQSECSPVMV 147
            LD+F+ SRI +R LVD +I+++  KPGF+GV++ ECSPV +
Sbjct:  162 LDNFYNSRIGIRMLVDQHIAAQTPKPGFTGVVKDECSPVKI 202          
BLAST of mRNA_H-elongata_contig196869.5490.1 vs. uniprot
Match: R1DE73_EMIHU (Protein-serine/threonine kinase n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DE73_EMIHU)

HSP 1 Score: 53.1 bits (126), Expect = 7.960e-7
Identity = 26/54 (48.15%), Postives = 36/54 (66.67%), Query Frame = 1
Query:    1 QRHRIDRILDSFFISRISLRFLVDTYISSKAN-----KPGFSGVIQSECSPVMV 147
            Q+  ID  LD FF++RI  RFL++ Y++S  +     +PGFSG+IQS CSP  V
Sbjct:  196 QQRVIDTHLDEFFLARIGQRFLIEHYLASSGSSGAEQRPGFSGIIQSRCSPFEV 249          
BLAST of mRNA_H-elongata_contig196869.5490.1 vs. uniprot
Match: D0MWV1_PHYIT (Protein-serine/threonine kinase n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MWV1_PHYIT)

HSP 1 Score: 49.7 bits (117), Expect = 1.330e-5
Identity = 20/41 (48.78%), Postives = 31/41 (75.61%), Query Frame = 1
Query:   25 LDSFFISRISLRFLVDTYISSKANKPGFSGVIQSECSPVMV 147
            LD+F+ SRI +R LVD +++++  KPGFSG++  E SPV +
Sbjct:  162 LDNFYNSRIGIRMLVDQHVAAQTPKPGFSGIVNDETSPVKI 202          
BLAST of mRNA_H-elongata_contig196869.5490.1 vs. uniprot
Match: A0A8J5M9D2_9STRA (BCDHK_Adom3 domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5M9D2_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 1.840e-5
Identity = 21/41 (51.22%), Postives = 31/41 (75.61%), Query Frame = 1
Query:   25 LDSFFISRISLRFLVDTYISSKANKPGFSGVIQSECSPVMV 147
            LD+F+ SRI +R LVD +I+++  KPGFSG++  E SPV +
Sbjct:  796 LDNFYNSRIGIRMLVDQHIAAQTPKPGFSGIVNVETSPVKI 836          
BLAST of mRNA_H-elongata_contig196869.5490.1 vs. uniprot
Match: L1JNM9_GUITC (Protein-serine/threonine kinase n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JNM9_GUITC)

HSP 1 Score: 48.1 bits (113), Expect = 4.670e-5
Identity = 20/42 (47.62%), Postives = 31/42 (73.81%), Query Frame = 1
Query:   13 IDRILDSFFISRISLRFLVDTYISSKANKPGFSGVIQSECSP 138
            IDR+L SF+ SRI +RFL++ +I+SK +  G+SG++   C P
Sbjct:  146 IDRVLTSFYTSRIGVRFLMEHHITSKQHVEGYSGILAKACRP 187          
BLAST of mRNA_H-elongata_contig196869.5490.1 vs. uniprot
Match: A0A7S4UHR4_GUITH (Protein-serine/threonine kinase n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4UHR4_GUITH)

HSP 1 Score: 48.1 bits (113), Expect = 4.690e-5
Identity = 20/42 (47.62%), Postives = 31/42 (73.81%), Query Frame = 1
Query:   13 IDRILDSFFISRISLRFLVDTYISSKANKPGFSGVIQSECSP 138
            IDR+L SF+ SRI +RFL++ +I+SK +  G+SG++   C P
Sbjct:  225 IDRVLTSFYTSRIGVRFLMEHHITSKQHVEGYSGILAKACRP 266          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig196869.5490.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D8LK85_ECTSI1.330e-2193.88Protein-serine/threonine kinase n=2 Tax=Ectocarpus... [more]
A0A836CJJ3_9STRA1.870e-1465.31Protein-serine/threonine kinase n=1 Tax=Tribonema ... [more]
A0A7S3YBE1_HETAK1.680e-850.00Protein-serine/threonine kinase (Fragment) n=1 Tax... [more]
A0A3M6VCB2_9STRA5.790e-753.66Protein-serine/threonine kinase n=2 Tax=Peronospor... [more]
R1DE73_EMIHU7.960e-748.15Protein-serine/threonine kinase n=2 Tax=Emiliania ... [more]
D0MWV1_PHYIT1.330e-548.78Protein-serine/threonine kinase n=2 Tax=Phytophtho... [more]
A0A8J5M9D2_9STRA1.840e-551.22BCDHK_Adom3 domain-containing protein n=1 Tax=Phyt... [more]
L1JNM9_GUITC4.670e-547.62Protein-serine/threonine kinase n=1 Tax=Guillardia... [more]
A0A7S4UHR4_GUITH4.690e-547.62Protein-serine/threonine kinase n=1 Tax=Guillardia... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig196869contigH-elongata_contig196869:109..255 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.7
Seed ortholog evalue1.2e-17
Seed eggNOG ortholog2880.D8LK85
Preferred namePDK2
KEGG koko:K00898,ko:K08776,ko:K17915
EggNOG free text desc.pyruvate dehydrogenase (acetyl-transferring) kinase activity
EggNOG OGsCOG0642@1,KOG0787@2759
EC2.7.11.2
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01001,ko01002,ko04812
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size147
Cds size147
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930114.5509653-CDS-H-elongata_contig196869:108..2551622930114.5509653-CDS-H-elongata_contig196869:108..255Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig196869 109..255 -
1691679286.2115464-CDS-H-elongata_contig196869:108..2551691679286.2115464-CDS-H-elongata_contig196869:108..255Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig196869 109..255 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig196869.5490.1prot_H-elongata_contig196869.5490.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig196869 109..255 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig196869.5490.1

>prot_H-elongata_contig196869.5490.1 ID=prot_H-elongata_contig196869.5490.1|Name=mRNA_H-elongata_contig196869.5490.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=49bp
QRHRIDRILDSFFISRISLRFLVDTYISSKANKPGFSGVIQSECSPVMV
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mRNA from alignment at H-elongata_contig196869:109..255-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig196869.5490.1 ID=mRNA_H-elongata_contig196869.5490.1|Name=mRNA_H-elongata_contig196869.5490.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=147bp|location=Sequence derived from alignment at H-elongata_contig196869:109..255- (Himanthalia elongata Himel1 dioecious)
CAGCGGCATCGAATTGACCGCATTCTGGACAGCTTCTTCATCTCGAGGAT CAGCCTGCGCTTCCTCGTGGACACCTACATCAGCAGCAAGGCGAACAAGC CGGGCTTCTCGGGTGTGATCCAGTCGGAATGCTCTCCCGTCATGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig196869:109..255-

>mRNA_H-elongata_contig196869.5490.1 ID=mRNA_H-elongata_contig196869.5490.1|Name=mRNA_H-elongata_contig196869.5490.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=294bp|location=Sequence derived from alignment at H-elongata_contig196869:109..255- (Himanthalia elongata Himel1 dioecious)
CAGCGGCATCGAATTGACCGCATTCTGGACAGCTTCTTCATCTCGAGGAT
CAGCCTGCGCTTCCTCGTGGACACCTACATCAGCAGCAAGGCGAACAAGC
CGGGCTTCTCGGGTGTGATCCAGTCGGAATGCTCTCCCGTCATGGTGCAG
CGGCATCGAATTGACCGCATTCTGGACAGCTTCTTCATCTCGAGGATCAG
CCTGCGCTTCCTCGTGGACACCTACATCAGCAGCAAGGCGAACAAGCCGG
GCTTCTCGGGTGTGATCCAGTCGGAATGCTCTCCCGTCATGGTG
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