mRNA_H-elongata_contig19654.5484.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19654.5484.1
Unique NamemRNA_H-elongata_contig19654.5484.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig19654.5484.1 vs. uniprot
Match: D7G2T2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2T2_ECTSI)

HSP 1 Score: 134 bits (336), Expect = 1.170e-30
Identity = 145/404 (35.89%), Postives = 196/404 (48.51%), Query Frame = 1 
Query:    1 QTELLEGKVSLLEEKLSVLVEQIDRFKSVELEGQRERDRLTSSHENTISRLEAEKLKSEEARK----NAHEL-RSEEFSRKLEEDRRAAREEEEARLAAMLKEERVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERRARLAEAALGEAVLREVRETQSLIGEVSSSSSQLGPDARAGCLQRTEDGRNRETSRERPTVAMDTSSASTLGKIVKDTATLIKLTGAFYDRYSATHRG------------EVTPGAASARGAQQDKVSCSPVKRDFASDGGGESS-------AAYAAAANVRS------SISDP----FSAEHPLRVDRSNGTSHRWEEEHSRGTIVERSVEDARGDQSCRGSLEQLDRRCYDLLESNARLCLRLQALGLEYAGLVRELLASG 1110
            +TELLEGK S          EQIDR+K+  L+ Q+++DRL  S E   S+L+ E    E+AR+    N+ E+ R  +  R+LEE R +A  E  ARL  +L+E                                    ERRAR  E A+GEAVLREVRETQ L+GE+S      G  A  G  + +   R   +  + P+ A+    AS L +IV + + LI+ TG FYDRYS TH+             E  PG+ S  G   +  +    +   A+ G G+S        AA A AA  RS      S  DP    FS + P     + G    W         ++R++E     ++   +L +LDR CY LLESNA+LCLR+Q LGLEYAGL REL+ASG
Sbjct:  329 KTELLEGKASXXXXXXXXXSEQIDRYKTEALQQQQDKDRLLRSQETLQSQLKEEVQSVEKARREFLSNSQEISRGRDKERELEEQRDSAAAEA-ARLTCLLEE------------------------------------ERRARREENAMGEAVLREVRETQGLLGEMSPH---RGDPAGTGPFRGSVLERGSSSDGDDPSSALGLQ-ASKLERIVAEASDLIRRTGHFYDRYSETHKNAGGEKNGDDEASEKLPGSNS--GLPGNDATAGRYQNRGAATGAGQSDRYEGRHRAASAEAAIERSFGANGRSPGDPPPGVFSPQQPP----AGGGHQPWRGREDSWNFLDRTLEHRHWVETG-PALRELDRACYSLLESNAQLCLRIQGLGLEYAGLTRELMASG 684
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BLAST of mRNA_H-elongata_contig19654.5484.1 vs. uniprot
Match: A0A6H5K601_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K601_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 6.260e-15
Identity = 72/195 (36.92%), Postives = 98/195 (50.26%), Query Frame = 1 
Query:  610 ASTLGKIVKDTATLIKLTGAFYDRYSATHRG------------EVTPGAASA-------RGAQQDKVSCSPVKRDFASDGGGESSAAYAA-----AANVRSSISDPFSAEHPLRVDRSNGTSHRWEEEHSRGTIVERSVEDARGDQSCRGSLEQLDRRCYDLLESNARLCLRLQALGLEYAGLVRELLASGESKV 1122
            AS L +IV + + LI+ TG FYDRYS TH+             E  PG  S+        G  Q++   +   +    +G   +++A AA      AN  S  + P     P ++  S G    W      G  ++R++E   G      +L +LDR CY LLESNA+LCLRLQ LGLEYAGL R+LLASG  +V
Sbjct:    8 ASKLERIVAEASDLIRQTGHFYDRYSETHKNAGGDKNGDDKASEKIPGGNSSLLGNDATAGRHQNRGVATAAGQSDRCEGRHRAASAGAAMERSFGANGSSPGNPPPGVFSPQQL--SAGGHQPWRGREDSGNCLDRTLEHRHG-VGAGPALRELDRACYSLLESNAQLCLRLQGLGLEYAGLSRQLLASGAKEV 199
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19654.5484.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G2T2_ECTSI1.170e-3035.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K601_9PHAE6.260e-1536.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19654contigH-elongata_contig19654:880..4145 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-13_004270.1
Exons4
Model size1128
Cds size1128
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19654.5484.1prot_H-elongata_contig19654.5484.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19654 880..4145 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930113.8391297-CDS-H-elongata_contig19654:879..12591622930113.8391297-CDS-H-elongata_contig19654:879..1259Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19654 880..1259 +
1691679285.824756-CDS-H-elongata_contig19654:879..12591691679285.824756-CDS-H-elongata_contig19654:879..1259Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19654 880..1259 +
1622930113.860812-CDS-H-elongata_contig19654:2438..25441622930113.860812-CDS-H-elongata_contig19654:2438..2544Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19654 2439..2544 +
1691679285.8333757-CDS-H-elongata_contig19654:2438..25441691679285.8333757-CDS-H-elongata_contig19654:2438..2544Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19654 2439..2544 +
1622930113.877956-CDS-H-elongata_contig19654:3056..31791622930113.877956-CDS-H-elongata_contig19654:3056..3179Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19654 3057..3179 +
1691679285.8439157-CDS-H-elongata_contig19654:3056..31791691679285.8439157-CDS-H-elongata_contig19654:3056..3179Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19654 3057..3179 +
1622930113.8939745-CDS-H-elongata_contig19654:3626..41451622930113.8939745-CDS-H-elongata_contig19654:3626..4145Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19654 3627..4145 +
1691679285.852305-CDS-H-elongata_contig19654:3626..41451691679285.852305-CDS-H-elongata_contig19654:3626..4145Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19654 3627..4145 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19654.5484.1

>prot_H-elongata_contig19654.5484.1 ID=prot_H-elongata_contig19654.5484.1|Name=mRNA_H-elongata_contig19654.5484.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=376bp
QTELLEGKVSLLEEKLSVLVEQIDRFKSVELEGQRERDRLTSSHENTISR
LEAEKLKSEEARKNAHELRSEEFSRKLEEDRRAAREEEEARLAAMLKEER
VLREEDALRMSVILERKVAARDDKIERLGSLLEKERRARLAEAALGEAVL
REVRETQSLIGEVSSSSSQLGPDARAGCLQRTEDGRNRETSRERPTVAMD
TSSASTLGKIVKDTATLIKLTGAFYDRYSATHRGEVTPGAASARGAQQDK
VSCSPVKRDFASDGGGESSAAYAAAANVRSSISDPFSAEHPLRVDRSNGT
SHRWEEEHSRGTIVERSVEDARGDQSCRGSLEQLDRRCYDLLESNARLCL
RLQALGLEYAGLVRELLASGESKVK*
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mRNA from alignment at H-elongata_contig19654:880..4145+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19654.5484.1 ID=mRNA_H-elongata_contig19654.5484.1|Name=mRNA_H-elongata_contig19654.5484.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3266bp|location=Sequence derived from alignment at H-elongata_contig19654:880..4145+ (Himanthalia elongata Himel1 dioecious)
CAGACAGAGCTCTTGGAAGGGAAAGTTTCGCTCCTCGAGGAAAAATTGTC
TGTACTCGTGGAGCAGATCGATCGTTTCAAATCGGTGGAACTCGAAGGGC
AACGAGAGCGAGATCGCCTCACATCATCTCATGAAAACACCATCTCCCGT
TTGGAGGCAGAGAAGCTCAAGTCCGAGGAAGCCAGAAAGAACGCACATGA
GCTTCGCTCCGAGGAGTTTTCTCGGAAACTTGAGGAAGACAGGAGAGCCG
CGAGAGAGGAAGAGGAAGCGCGTCTAGCGGCGATGTTGAAAGAGGAACGG
GTTTTGAGGGAAGAAGATGCATTGAGGATGTCGGTGATACTGGAGCGTAA
GGTGGCTGCCCGAGACGATAAAATAGAAAGGTAGGTGTGCTTTTTGCAAA
GACGAGAGAGGACTTCTGGTTTTCCGTTCTGTAGCCAACCCCCATATTTT
CATGGAACGCCGATGTGAAACATTTTGCTGATTTAGCAGTTCGTTGGCTC
GTTGGATTCTTTGTTTATTTGGGTGTTGATTATTTAGGGAAGGGGAACAA
GCGGTTTCTCGCGGCACATACATGCATACACACACACACACACACACAAG
TGGCATAGAAGGACTAGGATGACAGGGCCGGATTGCGCCGTTATGTGCAA
TTTTAAAAATACACACACACACACACACACACACACACACACACACACAC
ACACACACACACACGCCTATTTACTGCGCCAAGCAGCGATCGACAAGATT
TACACATGTGTTGGAGAGGGAGCATGTCCACCCTCTCCCGCGTTTTCCAC
CCAGTGTGTTTCTCCCGGCAGAGAGGTGTAGTTAATGCCGAGGGGGTGAC
GTCATGGTCGAGAGCCGTGATAATGTGTAGAGGAATTGTGGTTGAATACA
GGCGCATTTCGAGCCAAAAATATGTTCACAAAAAGTAACTCCCGGGTGGA
TTTATGTGCAATTAAATAAATGTACAGTCTAGATAACAGCGCCGGATTGC
GCGGTTATGTAAAATTAGTAAATACACACACATACACACACACACACACA
CACACGCGCGCGCACGCACACACACACACGCACACACACACACACACACA
AAATGCGTTTTCTTTGTCACGTCGATCAGAGTTTTTTTTAGCAAATATTA
TAGAATCCCCTATTGGGAGGATCAATTCGAGAGTATCCTAAGAGGGGCTA
GCATGACAGGGCCGGATTGCGCAGTTATGTGCAAATCAATAAATACACAC
ATACACGCACACGCACATCATCATCCCTGATGTTGACTTCTAGCTAATAA
GCACTCGTTTAGACCCTGGTTAGACTTGTCCCAAGAATTACACATATATA
TATATACACCCCACATTGCTTTAACCTTTGAAAAATTATTTATTTCAAGT
GGAAAAGTCAATGAAGTGTTTCATGTAGTTCATTTTAGTGTGCTAAAGGA
ACCCGAAATATCTTTAATAATGTTAATACTGCCTAGAAGAAGAGTAGAAA
CCTAACAGATCGAGGTCACCCTAAGCCGGAGATCTCCCCGCCCCCTCCCG
GAAAAAAAGGCTGGGTTCGCTCTTGGAGAAGGAACGGCGGGCCCGACTGG
CCGAAGCTGCTCTAGGTGAGGCAGTGCTTAGAGAAGTGCGCGAGACTCAG
AGCCTCATAGGCGAGGTGAGTTCTCGACGCTCTGTTATTATCGTCGATTT
TGACGCTGTATATGACACCCAAGAGATCAAAATATTCGTTCACTTCGCCC
CCAATTTTCTCGGCATTTCTTCTTAAATAGCTCACCGAGATTGTAAGATC
TGTCCCGTCCTTGAGTAGATCTAGGAAAAAAATACATCACTTTTAAAAAA
CACATCGCAGCGCTTGTTCGTTCCTCTCCCTATAGAATATACTGCATGCT
GTTGATTTTCGCCGAGAAAAATAACTGGGGAATGAGGACATCTATAACCG
ATTCTTGGGCGCACCGTCACCTGCGGTACGGTACCATCCATTCGTCTTCC
CTATCCGCGAGGTTTTTTCCCCCCTGATCGTCCGTCCTCCAACAATATGT
CCCCAAGGAAATTGGCGGGGCAGGGGGGGGGCATTTCAAGTGAGCCCAGA
CACCACTCCTTTGGGCTTGGCTGGACGCCCGGTCCGTTTCCACGCTCCGG
CTATTTCATGATCACAACCGTAACCAGGTATCGTCGTCCAGCTCCCAATT
GGGACCTGACGCCAGAGCGGGATGCCTGCAAAGAACGGAAGACGGAAGGA
ATCGTGAAACATCTCGAGAGCGACCTACGGTCGCCATGGACACTTCGTCT
GTCTTAGAAGTACAGGTTTGTACAATAGTCACTATCTCTACACCCGATCG
AATCAGACTACTTTTCGGAGAGTATCTCTAGTGCATCAGGAGCATAGTCT
CAGGATTTACCACAAAATTTCGGCTCAGGTTTCTGGCTCATATCGGGTGC
GTGTGGCGAATCTTTCCTCGAATTCAGGGTAGGGGATTATATCTAAACAT
CCCCTGCCGAGGATTTGTCTACCTATCCCCTTACCTTGTAAATGAGTCGA
ATACCCTATACCCTATACCCTATACCCTATTCAAACGTGATCCGTTCTAT
CTGTCCATGAAAGGGAATACGCCCCTCCTATAAATCGGGGATAGGTGATC
GAAAAATCTCCTTGCTAACTATCGTTGGAAATAACTCGCGATTCTGATGA
GTGTATGTACTGAGCGTATGCATAATACATGTGGTTTGTGAGCTCAGGCG
TCGACGTTAGGAAAAATCGTGAAGGACACTGCCACGCTGATCAAGCTCAC
GGGTGCGTTTTACGACCGTTACTCCGCGACCCATCGCGGGGAGGTTACAC
CGGGAGCTGCGAGTGCGAGAGGCGCTCAGCAGGACAAGGTTTCTTGTAGT
CCAGTCAAAAGAGATTTTGCTAGTGACGGTGGAGGTGAGAGCTCGGCAGC
GTATGCCGCAGCGGCGAACGTAAGAAGCTCGATCTCGGACCCTTTCTCAG
CGGAGCATCCTCTCAGGGTCGACAGAAGTAATGGGACAAGCCATAGGTGG
GAAGAAGAGCATTCGCGGGGGACAATCGTTGAGCGATCTGTGGAGGATGC
GAGGGGGGATCAATCTTGTCGGGGCTCGTTGGAGCAGCTGGATCGGAGAT
GCTACGACCTCCTCGAATCGAACGCACGGCTATGCCTGAGGCTGCAGGCA
CTTGGTTTGGAGTACGCGGGCCTCGTTCGTGAGCTGTTAGCCTCCGGAGA
GAGCAAGGTAAAATAA
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Coding sequence (CDS) from alignment at H-elongata_contig19654:880..4145+

>mRNA_H-elongata_contig19654.5484.1 ID=mRNA_H-elongata_contig19654.5484.1|Name=mRNA_H-elongata_contig19654.5484.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2256bp|location=Sequence derived from alignment at H-elongata_contig19654:880..4145+ (Himanthalia elongata Himel1 dioecious)
CAGACAGAGCTCTTGGAAGGGAAAGTTTCGCTCCTCGAGGAAAAATTGTC
TGTACTCGTGGAGCAGATCGATCGTTTCAAATCGGTGGAACTCGAAGGGC
AACGAGAGCGAGATCGCCTCACATCATCTCATGAAAACACCATCTCCCGT
TTGGAGGCAGAGAAGCTCAAGTCCGAGGAAGCCAGAAAGAACGCACATGA
GCTTCGCTCCGAGGAGTTTTCTCGGAAACTTGAGGAAGACAGGAGAGCCG
CGAGAGAGGAAGAGGAAGCGCGTCTAGCGGCGATGTTGAAAGAGGAACGG
GTTTTGAGGGAAGAAGATGCATTGAGGATGTCGGTGATACTGGAGCGTAA
GGTGGCTGCCCGAGACGATAAAATAGAAAGCAGACAGAGCTCTTGGAAGG
GAAAGTTTCGCTCCTCGAGGAAAAATTGTCTGTACTCGTGGAGCAGATCG
ATCGTTTCAAATCGGTGGAACTCGAAGGGCAACGAGAGCGAGATCGCCTC
ACATCATCTCATGAAAACACCATCTCCCGTTTGGAGGCAGAGAAGCTCAA
GTCCGAGGAAGCCAGAAAGAACGCACATGAGCTTCGCTCCGAGGAGTTTT
CTCGGAAACTTGAGGAAGACAGGAGAGCCGCGAGAGAGGAAGAGGAAGCG
CGTCTAGCGGCGATGTTGAAAGAGGAACGGGTTTTGAGGGAAGAAGATGC
ATTGAGGATGTCGGTGATACTGGAGCGTAAGGTGGCTGCCCGAGACGATA
AAATAGAAAGGCTGGGTTCGCTCTTGGAGAAGGAACGGCGGGCCCGACTG
GCCGAAGCTGCTCTAGGTGAGGCAGTGCTTAGAGAAGTGCGCGAGACTCA
GAGCCTCATAGGCGAGGCTGGGTTCGCTCTTGGAGAAGGAACGGCGGGCC
CGACTGGCCGAAGCTGCTCTAGGTGAGGCAGTGCTTAGAGAAGTGCGCGA
GACTCAGAGCCTCATAGGCGAGGTATCGTCGTCCAGCTCCCAATTGGGAC
CTGACGCCAGAGCGGGATGCCTGCAAAGAACGGAAGACGGAAGGAATCGT
GAAACATCTCGAGAGCGACCTACGGTCGCCATGGACACTTCGTCTGTATC
GTCGTCCAGCTCCCAATTGGGACCTGACGCCAGAGCGGGATGCCTGCAAA
GAACGGAAGACGGAAGGAATCGTGAAACATCTCGAGAGCGACCTACGGTC
GCCATGGACACTTCGTCTGCGTCGACGTTAGGAAAAATCGTGAAGGACAC
TGCCACGCTGATCAAGCTCACGGGTGCGTTTTACGACCGTTACTCCGCGA
CCCATCGCGGGGAGGTTACACCGGGAGCTGCGAGTGCGAGAGGCGCTCAG
CAGGACAAGGTTTCTTGTAGTCCAGTCAAAAGAGATTTTGCTAGTGACGG
TGGAGGTGAGAGCTCGGCAGCGTATGCCGCAGCGGCGAACGTAAGAAGCT
CGATCTCGGACCCTTTCTCAGCGGAGCATCCTCTCAGGGTCGACAGAAGT
AATGGGACAAGCCATAGGTGGGAAGAAGAGCATTCGCGGGGGACAATCGT
TGAGCGATCTGTGGAGGATGCGAGGGGGGATCAATCTTGTCGGGGCTCGT
TGGAGCAGCTGGATCGGAGATGCTACGACCTCCTCGAATCGAACGCACGG
CTATGCCTGAGGCTGCAGGCACTTGGTTTGGAGTACGCGGGCCTCGTTCG
TGAGCTGTTAGCCTCCGGAGAGAGCAAGGTAAAATAAGCGTCGACGTTAG
GAAAAATCGTGAAGGACACTGCCACGCTGATCAAGCTCACGGGTGCGTTT
TACGACCGTTACTCCGCGACCCATCGCGGGGAGGTTACACCGGGAGCTGC
GAGTGCGAGAGGCGCTCAGCAGGACAAGGTTTCTTGTAGTCCAGTCAAAA
GAGATTTTGCTAGTGACGGTGGAGGTGAGAGCTCGGCAGCGTATGCCGCA
GCGGCGAACGTAAGAAGCTCGATCTCGGACCCTTTCTCAGCGGAGCATCC
TCTCAGGGTCGACAGAAGTAATGGGACAAGCCATAGGTGGGAAGAAGAGC
ATTCGCGGGGGACAATCGTTGAGCGATCTGTGGAGGATGCGAGGGGGGAT
CAATCTTGTCGGGGCTCGTTGGAGCAGCTGGATCGGAGATGCTACGACCT
CCTCGAATCGAACGCACGGCTATGCCTGAGGCTGCAGGCACTTGGTTTGG
AGTACGCGGGCCTCGTTCGTGAGCTGTTAGCCTCCGGAGAGAGCAAGGTA
AAATAA
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