mRNA_H-elongata_contig196535.5483.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig196535.5483.1
Unique NamemRNA_H-elongata_contig196535.5483.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig196535.5483.1 vs. uniprot
Match: UPI001035699E (uncharacterized protein LOC114268089 n=1 Tax=Camellia sinensis TaxID=4442 RepID=UPI001035699E)

HSP 1 Score: 52.0 bits (123), Expect = 1.000e-5
Identity = 29/101 (28.71%), Postives = 47/101 (46.53%), Query Frame = 1 
Query:    1 PVFCMNFCHVKGTWNGIMCLLTAKDADNKLIIVCMVVLAVDNADVYDYTLLHTKKNPDMAGVVNHETTTYFVDGHKGSAEGLPRGVPLSEGRRCLRYLVGN 303
            P  C++ CH+KG++ G++  + A D DN L ++   V+  +    + + L H +   D       +  T   DG KG    L    P +  RRC R+L  N
Sbjct:   45 PFICVDGCHLKGSYGGVLLAVVALDRDNGLFLLAYAVVECECKKNWRFFLYHLRTIIDNGP--QSKPRTIMSDGQKGIEPALKEVTPEATHRRCCRHLFNN 143
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig196535.5483.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001035699E1.000e-528.71uncharacterized protein LOC114268089 n=1 Tax=Camel... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig196535contigH-elongata_contig196535:690..995 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size306
Cds size294
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930113.77893-UTR-H-elongata_contig196535:689..7011622930113.77893-UTR-H-elongata_contig196535:689..701Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig196535 690..701 +
1691679285.8094795-UTR-H-elongata_contig196535:689..7011691679285.8094795-UTR-H-elongata_contig196535:689..701Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig196535 690..701 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930113.7932653-CDS-H-elongata_contig196535:701..9951622930113.7932653-CDS-H-elongata_contig196535:701..995Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig196535 702..995 +
1691679285.8170166-CDS-H-elongata_contig196535:701..9951691679285.8170166-CDS-H-elongata_contig196535:701..995Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig196535 702..995 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig196535.5483.1prot_H-elongata_contig196535.5483.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig196535 702..995 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig196535.5483.1

>prot_H-elongata_contig196535.5483.1 ID=prot_H-elongata_contig196535.5483.1|Name=mRNA_H-elongata_contig196535.5483.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=98bp
MNFCHVKGTWNGIMCLLTAKDADNKLIIVCMVVLAVDNADVYDYTLLHTK
KNPDMAGVVNHETTTYFVDGHKGSAEGLPRGVPLSEGRRCLRYLVGNI
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mRNA from alignment at H-elongata_contig196535:690..995+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig196535.5483.1 ID=mRNA_H-elongata_contig196535.5483.1|Name=mRNA_H-elongata_contig196535.5483.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=306bp|location=Sequence derived from alignment at H-elongata_contig196535:690..995+ (Himanthalia elongata Himel1 dioecious)
CCGGTCTTTTGCATGAACTTCTGCCACGTCAAGGGAACCTGGAACGGCAT
TATGTGCCTCCTGACGGCGAAAGACGCTGACAACAAGCTCATTATCGTCT
GCATGGTTGTGTTAGCCGTAGATAATGCTGATGTGTACGACTACACCTTA
CTGCACACCAAGAAAAACCCGGACATGGCGGGGGTTGTCAACCACGAGAC
AACCACGTACTTCGTCGACGGCCACAAGGGCTCGGCGGAAGGCCTTCCGC
GGGGGGTCCCGCTCTCAGAGGGGAGGAGGTGCCTGAGGTATCTCGTCGGC
AACATC
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Coding sequence (CDS) from alignment at H-elongata_contig196535:690..995+

>mRNA_H-elongata_contig196535.5483.1 ID=mRNA_H-elongata_contig196535.5483.1|Name=mRNA_H-elongata_contig196535.5483.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=588bp|location=Sequence derived from alignment at H-elongata_contig196535:690..995+ (Himanthalia elongata Himel1 dioecious)
ATGAACTTCTGCCACGTCAAGGGAACCTGGAACGGCATTATGTGCCTCCT
GACGGCGAAAGACGCTGACAACAAGCTCATTATCGTCTGCATGGTTGTGT
TAGCCGTAGATAATGCTGATGTGTACGACTACACCTTACTGCACACCAAG
AAAAACCCGGACATGGCGGGGGTTGTCAACCACGAGACAACCACGTACTT
CGTCGACGGCCACAAGGGCTCGGCGGAAGGCCTTCCGCGGGGGGTCCCGC
TCTCAGAGGGGAGGAGGTGCCTGAGGTATCTCGTCGGCAACATCATGAAC
TTCTGCCACGTCAAGGGAACCTGGAACGGCATTATGTGCCTCCTGACGGC
GAAAGACGCTGACAACAAGCTCATTATCGTCTGCATGGTTGTGTTAGCCG
TAGATAATGCTGATGTGTACGACTACACCTTACTGCACACCAAGAAAAAC
CCGGACATGGCGGGGGTTGTCAACCACGAGACAACCACGTACTTCGTCGA
CGGCCACAAGGGCTCGGCGGAAGGCCTTCCGCGGGGGGTCCCGCTCTCAG
AGGGGAGGAGGTGCCTGAGGTATCTCGTCGGCAACATC
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