mRNA_H-elongata_contig19650.5480.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19650.5480.1
Unique NamemRNA_H-elongata_contig19650.5480.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig19650.5480.1 vs. uniprot
Match: D7FVA5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVA5_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 1.890e-8
Identity = 26/39 (66.67%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:    1 MAEGFTDASYVTGIRLEGLEGKRLWLLRVPRGVDIKRLE 117
            MAEGFT A YVT + L  ++GKRLWLLRVPR +D  RLE
Sbjct:    1 MAEGFTAADYVTSLPLSEVQGKRLWLLRVPRHIDTSRLE 39
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19650.5480.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVA5_ECTSI1.890e-866.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19650contigH-elongata_contig19650:149..295 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionDNA-directed RNA polymerase I, subunit RPA34.5
Ec32 orthologEc-14_000360.1
Exons1
Model size147
Cds size147
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930113.490178-CDS-H-elongata_contig19650:148..2951622930113.490178-CDS-H-elongata_contig19650:148..295Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19650 149..295 -
1691679285.7041242-CDS-H-elongata_contig19650:148..2951691679285.7041242-CDS-H-elongata_contig19650:148..295Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19650 149..295 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19650.5480.1prot_H-elongata_contig19650.5480.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19650 149..295 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19650.5480.1

>prot_H-elongata_contig19650.5480.1 ID=prot_H-elongata_contig19650.5480.1|Name=mRNA_H-elongata_contig19650.5480.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=49bp
MAEGFTDASYVTGIRLEGLEGKRLWLLRVPRGVDIKRLEVRPVVQHLL*
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mRNA from alignment at H-elongata_contig19650:149..295-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19650.5480.1 ID=mRNA_H-elongata_contig19650.5480.1|Name=mRNA_H-elongata_contig19650.5480.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=147bp|location=Sequence derived from alignment at H-elongata_contig19650:149..295- (Himanthalia elongata Himel1 dioecious)
ATGGCGGAAGGCTTTACTGATGCAAGTTACGTGACGGGGATCAGGCTAGA
AGGCTTGGAAGGCAAGCGACTTTGGCTATTAAGAGTCCCGCGTGGTGTGG
ACATAAAGCGATTGGAGGTACGACCAGTAGTACAGCACTTACTGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig19650:149..295-

>mRNA_H-elongata_contig19650.5480.1 ID=mRNA_H-elongata_contig19650.5480.1|Name=mRNA_H-elongata_contig19650.5480.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=294bp|location=Sequence derived from alignment at H-elongata_contig19650:149..295- (Himanthalia elongata Himel1 dioecious)
ATGGCGGAAGGCTTTACTGATGCAAGTTACGTGACGGGGATCAGGCTAGA
AGGCTTGGAAGGCAAGCGACTTTGGCTATTAAGAGTCCCGCGTGGTGTGG
ACATAAAGCGATTGGAGGTACGACCAGTAGTACAGCACTTACTGTAGATG
GCGGAAGGCTTTACTGATGCAAGTTACGTGACGGGGATCAGGCTAGAAGG
CTTGGAAGGCAAGCGACTTTGGCTATTAAGAGTCCCGCGTGGTGTGGACA
TAAAGCGATTGGAGGTACGACCAGTAGTACAGCACTTACTGTAG
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