mRNA_H-elongata_contig1964.5476.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1964.5476.1
Unique NamemRNA_H-elongata_contig1964.5476.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1964.5476.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1964contigH-elongata_contig1964:1088..2186 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size287
Cds size285
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1964.5476.1prot_H-elongata_contig1964.5476.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1964 1090..2186 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930113.2176855-CDS-H-elongata_contig1964:1089..11111622930113.2176855-CDS-H-elongata_contig1964:1089..1111Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1964 1090..1111 -
1691679285.5855258-CDS-H-elongata_contig1964:1089..11111691679285.5855258-CDS-H-elongata_contig1964:1089..1111Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1964 1090..1111 -
1622930113.232737-CDS-H-elongata_contig1964:1499..15411622930113.232737-CDS-H-elongata_contig1964:1499..1541Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1964 1500..1541 -
1691679285.595122-CDS-H-elongata_contig1964:1499..15411691679285.595122-CDS-H-elongata_contig1964:1499..1541Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1964 1500..1541 -
1622930113.2450185-CDS-H-elongata_contig1964:1965..21861622930113.2450185-CDS-H-elongata_contig1964:1965..2186Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1964 1966..2186 -
1691679285.6076825-CDS-H-elongata_contig1964:1965..21861691679285.6076825-CDS-H-elongata_contig1964:1965..2186Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1964 1966..2186 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1964.5476.1

>prot_H-elongata_contig1964.5476.1 ID=prot_H-elongata_contig1964.5476.1|Name=mRNA_H-elongata_contig1964.5476.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=95bp
RRKLDKLIYKCYNDGVRTSRKVVNNVDDKVARGFHPRQGAINEGLYSSCL
NDVAVDQLKGSFAMIVQLELVARRPSFRGGLGEAMVNITLAGAKS
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mRNA from alignment at H-elongata_contig1964:1088..2186-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1964.5476.1 ID=mRNA_H-elongata_contig1964.5476.1|Name=mRNA_H-elongata_contig1964.5476.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1099bp|location=Sequence derived from alignment at H-elongata_contig1964:1088..2186- (Himanthalia elongata Himel1 dioecious)
CGCAGAAAACTTGATAAACTTATATACAAATGTTACAACGACGGTGTACG
GACCTCTCGCAAAGTGGTCAACAATGTTGACGATAAGGTGGCTAGGGGAT
TTCACCCTCGTCAAGGCGCGATCAACGAGGGACTGTATTCCAGCTGTCTC
AACGATGTGGCGGTGGATCAGCTCAAGGGATCCTTCGCGATGATCGTGCA
ACTTGAGCTTGTCGCGCGACGGTGCGAGAGAGTCTCTTGGGTGAACTTGC
TGGTTTCGTATTAGGCGTGTTGATTTGCCGTTTGTTGGGCCGTGAGGAGG
ATATATCAAATTGATTCATCATCTATTCGGAAGATTGGCCATGTTGCTGC
GGAAGGCTTTGCCTTAAGCTGAGTAACGTACGCGCAGATAAGCGTGAGAG
TGTCATCTTAGAAATGAAATGAAAGCATGTGATCGAAGGGGGGCGCCCGA
AACATGTTGAGGGGGGAGAGAGGGAGGATGAAGACGAAATGGAGCAAGAA
AAAAAAGAAAAAAAACGTTTGCGCCCGCTAACCCAGCCGGCGATTAGAAA
ATGTCGGGCTGGTACTCTATACTTTGCTACTACTACTATATCTTAACTAC
CTGAAGACCGTGCGTTCGCCCTGTATCATTGTCGTGGAAAAAAAGACCAA
GCTTCCGAGGTGGACTTGGCGAAGCTATGGTCAACATGTGAGTGTGGTAA
AAGGTTTGTCGACGGGAGATGGGGGGAACTGAGTAGGATATCTTAACCAT
CGGTAAATAATGTCAACGGCGATGAAACTCCAATGATTTATCCTTCGGAC
CAGATTTGTGTTGATGCGCTTCACATACTAGGCCAGAAACCAATTTCTAG
TGACCATGTCAGTAAACATGCATCAATCTACGCATGTATCTTGCCTTAAC
ATCGGAATGTAAACGATACATCTTGTTAATATCTATCGCTAGGATACGAA
TTGTGAACACAATACACCAGTGTTTCTCTTTCACTACATCGTTCGGAGGT
TACTTATCATACTACCCTCATCCGACATCCCCACAGAGTCAACTAATCAG
ACACTTTTGTTTGATTGCATGACAGCACGCTTGCAGGGGCAAAATCAAC
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Coding sequence (CDS) from alignment at H-elongata_contig1964:1088..2186-

>mRNA_H-elongata_contig1964.5476.1 ID=mRNA_H-elongata_contig1964.5476.1|Name=mRNA_H-elongata_contig1964.5476.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=570bp|location=Sequence derived from alignment at H-elongata_contig1964:1088..2186- (Himanthalia elongata Himel1 dioecious)
CGCAGAAAACTTGATAAACTTATATACAAATGTTACAACGACGGTGTACG
GACCTCTCGCAAAGTGGTCAACAATGTTGACGATAAGGTGGCTAGGGGAT
TTCACCCTCGTCAAGGCGCGATCAACGAGGGACTGTATTCCAGCTGTCTC
AACGATGTGGCGGTGGATCAGCTCAAGGGATCCTTCGCGATGATCGTGCA
ACTTGAGCTTGTCGCGCGACGCGCAGAAAACTTGATAAACTTATATACAA
ATGTTACAACGACGGTGTACGGACCTCTCGCAAAGTGGTCAACAATGTTG
ACGATAAGGTGGCTAGGGGATTTCACCCTCGTCAAGGCGCGATCAACGAG
GGACTGTATTCCAGCTGTCTCAACGATGTGGCGGTGGATCAGCTCAAGGG
ATCCTTCGCGATGATCGTGCAACTTGAGCTTGTCGCGCGACGACCAAGCT
TCCGAGGTGGACTTGGCGAAGCTATGGTCAACATACCAAGCTTCCGAGGT
GGACTTGGCGAAGCTATGGTCAACATCACGCTTGCAGGGGCAAAATCACA
CGCTTGCAGGGGCAAAATCA
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