mRNA_H-elongata_contig194838.5420.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig194838.5420.1 vs. uniprot
Match: A0A6H5KBT2_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBT2_9PHAE) HSP 1 Score: 110 bits (276), Expect = 1.240e-25 Identity = 54/149 (36.24%), Postives = 84/149 (56.38%), Query Frame = 1
Query: 4 GQRYSQVDTFVYLRSTISSVGDVGPEIKRRTGYAWNCFLKYSRVVYDNPYIAVADKVRFLKAEVLEVMLYGCVTWTLSPGDFDKLREVHRGMLLRFLNAYTSTRAAPDYQMLSYLEVLLRTDCECIEVAVMKRILHYAGHVARVDDERL 450
GQ+Y+Q F YL ++ GD+ EI R+ AW C +Y R ++D P K+R L+AE +E +LYGC+TW+ G + LR +H +LLR + R Y+ LSY ++L R +C+ +E + ++ L +AG + R D RL
Sbjct: 348 GQKYAQTTEFRYLGGLVNEHGDLTREINYRSRGAWACLRRYGRELFDRPQAPFRLKIRLLRAEAMEALLYGCMTWSPLSGHYQTLRSIHHRLLLRVIGY---KRKKDTYRQLSYAQMLKRVECQRVEATIRQQRLLFAGALERQSDGRL 493
BLAST of mRNA_H-elongata_contig194838.5420.1 vs. uniprot
Match: A0A6H5K5W0_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5W0_9PHAE) HSP 1 Score: 106 bits (265), Expect = 1.730e-25 Identity = 63/150 (42.00%), Postives = 84/150 (56.00%), Query Frame = 1
Query: 4 GQRYSQVDTFVYLRSTISSVGDVGPEIKRRTGYAWNCFLKYSRVVYDNPYIAVADKVRFLKAEVLEVMLYGCVTWTLSPGDFDKLREVHRGMLLRFLNAYTSTRAAPDYQMLSYLEVLLRTDCE-CIEVAVMKRILHYAGHVARVDDERL 450
GQ Y Q D FVYL TIS+ G EI R+ AW C+ + S +YD K+R L+AEV+E +LYGC +W+L+ + KL HR L R + S R D + LSY + L++ CE IE V KR L +AG V R++D RL
Sbjct: 42 GQTYKQTDRFVYLERTISADGKADREITSRSCRAWKCYRRNSASMYDRRRANRQLKIRLLQAEVVEHLLYGCASWSLTAEHYTKLNGTHRQFLTRCIG--WSKRKRSD-RPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDSRL 188
BLAST of mRNA_H-elongata_contig194838.5420.1 vs. uniprot
Match: A0A6H5K2J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2J8_9PHAE) HSP 1 Score: 107 bits (266), Expect = 2.300e-25 Identity = 64/151 (42.38%), Postives = 83/151 (54.97%), Query Frame = 1
Query: 1 MGQRYSQVDTFVYLRSTISSVGDVGPEIKRRTGYAWNCFLKYSRVVYDNPYIAVADKVRFLKAEVLEVMLYGCVTWTLSPGDFDKLREVHRGMLLRFLNAYTSTRAAPDYQMLSYLEVLLRTDC-ECIEVAVMKRILHYAGHVARVDDERL 450
+G + Q FVYL I G + EI R A CF + S+ +YD P + KVR L+AEV+E +LYGCVTW L P ++ KLR H LLR + R D + LSY + L+ C E +E V KR L +AG VAR+ DERL
Sbjct: 118 VGMVFKQKKDFVYLGGKICQDGSIEGEINHRVQRAHACFRRNSQAMYDRPGGPLRLKVRLLQAEVVETLLYGCVTWNLKPAEYRKLRSAHHFFLLRCIG--WKKRERKD-RPLSYAKALITAGCDESVEATVRKRRLCFAGFVARMRDERL 265
BLAST of mRNA_H-elongata_contig194838.5420.1 vs. uniprot
Match: A0A6H5L5J5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5J5_9PHAE) HSP 1 Score: 108 bits (270), Expect = 2.740e-25 Identity = 64/150 (42.67%), Postives = 83/150 (55.33%), Query Frame = 1
Query: 4 GQRYSQVDTFVYLRSTISSVGDVGPEIKRRTGYAWNCFLKYSRVVYDNPYIAVADKVRFLKAEVLEVMLYGCVTWTLSPGDFDKLREVHRGMLLRFLNAYTSTRAAPDYQMLSYLEVLLRTDCE-CIEVAVMKRILHYAGHVARVDDERL 450
GQ Y Q D FVYL IS+ G EI R+ AW CF + S +YD P K+R L+AEV+E +LYGC +W+L+ + KL HR L R + S R D + LSY + L++ CE IE V KR L +AG V R+ D RL
Sbjct: 112 GQSYKQTDRFVYLGRAISADGKADREITSRSCRAWKCFRRNSASMYDRPRANRPLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIG--WSKRKRSD-RPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMKDSRL 258
BLAST of mRNA_H-elongata_contig194838.5420.1 vs. uniprot
Match: A0A6H5JPY3_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPY3_9PHAE) HSP 1 Score: 107 bits (266), Expect = 4.830e-25 Identity = 63/150 (42.00%), Postives = 84/150 (56.00%), Query Frame = 1
Query: 4 GQRYSQVDTFVYLRSTISSVGDVGPEIKRRTGYAWNCFLKYSRVVYDNPYIAVADKVRFLKAEVLEVMLYGCVTWTLSPGDFDKLREVHRGMLLRFLNAYTSTRAAPDYQMLSYLEVLLRTDCE-CIEVAVMKRILHYAGHVARVDDERL 450
GQ Y Q D FVYL TIS+ G EI R+ AW C+ + S +YD K+R L+AEV+E +LYGC +W+L+ + KL HR L R + S R D + LSY + L++ CE IE V KR L +AG V R++D RL
Sbjct: 61 GQTYKQTDRFVYLGRTISADGKADREITSRSCRAWKCYRRNSASMYDRRRADRQLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIG--WSKRKRSD-RPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDSRL 207
BLAST of mRNA_H-elongata_contig194838.5420.1 vs. uniprot
Match: A0A6H5JZD4_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZD4_9PHAE) HSP 1 Score: 109 bits (272), Expect = 7.060e-25 Identity = 64/150 (42.67%), Postives = 85/150 (56.67%), Query Frame = 1
Query: 4 GQRYSQVDTFVYLRSTISSVGDVGPEIKRRTGYAWNCFLKYSRVVYDNPYIAVADKVRFLKAEVLEVMLYGCVTWTLSPGDFDKLREVHRGMLLRFLNAYTSTRAAPDYQMLSYLEVLLRTDCE-CIEVAVMKRILHYAGHVARVDDERL 450
GQ Y Q D FVYL TIS+ G EI R+ AW C+ + S +YD K+R L+AEV+E +LYGC +W+L+ + KL E HR L R + S R D + LSY + L++ CE IE V KR L +AG V R++D RL
Sbjct: 406 GQTYKQTDRFVYLGRTISADGKADREITSRSCRAWKCYRRNSASMYDRRRADRQLKIRLLQAEVVETLLYGCASWSLTTEHYAKLNETHRQFLTRCIG--WSKRKRSD-RPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRL 552
BLAST of mRNA_H-elongata_contig194838.5420.1 vs. uniprot
Match: A0A6H5L020_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L020_9PHAE) HSP 1 Score: 108 bits (271), Expect = 9.980e-25 Identity = 64/150 (42.67%), Postives = 84/150 (56.00%), Query Frame = 1
Query: 4 GQRYSQVDTFVYLRSTISSVGDVGPEIKRRTGYAWNCFLKYSRVVYDNPYIAVADKVRFLKAEVLEVMLYGCVTWTLSPGDFDKLREVHRGMLLRFLNAYTSTRAAPDYQMLSYLEVLLRTDCE-CIEVAVMKRILHYAGHVARVDDERL 450
GQ Y Q D FVYL TIS+ G V EI RT AW C+ + S +YD K+R L+AEV+E +LYGC +W+L+ + KL HR L R + S R D + LSY + L++ CE IE V KR L + G V R++D RL
Sbjct: 549 GQTYKQTDRFVYLGRTISADGKVDREITSRTCRAWKCYRRNSASMYDRRRADRQLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIG--WSKRKRSD-RPLSYAQALIQAGCEETIEATVRKRRLCFVGFVVRMEDSRL 695
BLAST of mRNA_H-elongata_contig194838.5420.1 vs. uniprot
Match: A0A6H5JCQ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCQ1_9PHAE) HSP 1 Score: 104 bits (260), Expect = 1.480e-24 Identity = 61/150 (40.67%), Postives = 83/150 (55.33%), Query Frame = 1
Query: 4 GQRYSQVDTFVYLRSTISSVGDVGPEIKRRTGYAWNCFLKYSRVVYDNPYIAVADKVRFLKAEVLEVMLYGCVTWTLSPGDFDKLREVHRGMLLRFLNAYTSTRAAPDYQMLSYLEVLLRTDCE-CIEVAVMKRILHYAGHVARVDDERL 450
GQ Y Q D FVYL IS+ G EI R+ AW C+ + S +YD K+R L++EV+E +LYGC +W+L+ + KL HR L R + S R D + LSY + L++ CE IE V KR L +AG V R++D RL
Sbjct: 19 GQTYKQTDRFVYLERIISADGKADREITSRSCRAWKCYRRNSASMYDRRRANRQLKIRLLQSEVVETLLYGCASWSLTADHYTKLNGTHRQFLTRCIG--WSKRKRSD-RPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRL 165
BLAST of mRNA_H-elongata_contig194838.5420.1 vs. uniprot
Match: A0A6H5L5T8_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5T8_9PHAE) HSP 1 Score: 107 bits (266), Expect = 2.030e-24 Identity = 63/150 (42.00%), Postives = 84/150 (56.00%), Query Frame = 1
Query: 4 GQRYSQVDTFVYLRSTISSVGDVGPEIKRRTGYAWNCFLKYSRVVYDNPYIAVADKVRFLKAEVLEVMLYGCVTWTLSPGDFDKLREVHRGMLLRFLNAYTSTRAAPDYQMLSYLEVLLRTDCE-CIEVAVMKRILHYAGHVARVDDERL 450
GQ Y Q D FVYL TIS+ G EI R+ AW C+ + S +YD K+R L+AEV+E +LYGC +W+L+ + KL HR L R + S R D + LSY + L++ CE IE V KR L +AG V R++D RL
Sbjct: 162 GQTYKQTDRFVYLGRTISADGKADREITSRSCRAWKCYRRNSASMYDRRRADRQLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIG--WSKRKRSD-RPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRL 308
BLAST of mRNA_H-elongata_contig194838.5420.1 vs. uniprot
Match: A0A6H5JAM2_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAM2_9PHAE) HSP 1 Score: 102 bits (255), Expect = 3.070e-24 Identity = 61/150 (40.67%), Postives = 84/150 (56.00%), Query Frame = 1
Query: 4 GQRYSQVDTFVYLRSTISSVGDVGPEIKRRTGYAWNCFLKYSRVVYDNPYIAVADKVRFLKAEVLEVMLYGCVTWTLSPGDFDKLREVHRGMLLRFLNAYTSTRAAPDYQMLSYLEVLLRTDCE-CIEVAVMKRILHYAGHVARVDDERL 450
GQ Y Q D FVYL IS+ G EI R+ AW C+ + S +YD K+R L+AEV+E +L+GC +W+L+ + KL HR L R + S R D + LSY + L++ CE IE +V KR L +AG V R++D RL
Sbjct: 61 GQTYKQTDRFVYLGRIISADGKADREITSRSCRAWKCYRRNSASMYDRRRANRQLKIRLLQAEVVETLLHGCASWSLTAEHYTKLNGTHRQFLTRCIG--WSKRKRSD-RPLSYTQALIQAGCEETIEASVRKRGLCFAGFVMRMEDSRL 207 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig194838.5420.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig194838.5420.1 >prot_H-elongata_contig194838.5420.1 ID=prot_H-elongata_contig194838.5420.1|Name=mRNA_H-elongata_contig194838.5420.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=150bp MGQRYSQVDTFVYLRSTISSVGDVGPEIKRRTGYAWNCFLKYSRVVYDNPback to top mRNA from alignment at H-elongata_contig194838:11..460- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig194838.5420.1 ID=mRNA_H-elongata_contig194838.5420.1|Name=mRNA_H-elongata_contig194838.5420.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=450bp|location=Sequence derived from alignment at H-elongata_contig194838:11..460- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig194838:11..460- >mRNA_H-elongata_contig194838.5420.1 ID=mRNA_H-elongata_contig194838.5420.1|Name=mRNA_H-elongata_contig194838.5420.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=900bp|location=Sequence derived from alignment at H-elongata_contig194838:11..460- (Himanthalia elongata Himel1 dioecious)back to top |