mRNA_H-elongata_contig19465.5413.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig19465.5413.1 vs. uniprot
Match: D7FMX9_ECTSI (Boron transporter 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMX9_ECTSI) HSP 1 Score: 313 bits (803), Expect = 2.500e-99 Identity = 167/205 (81.46%), Postives = 187/205 (91.22%), Query Frame = 1
Query: 1 LNLVEGFGRGILADIKGKAGFYASDFTDGFNLKVLSSVFFLFFACLAPAVAFGGLLGVVTGGAMGTIEMIAATAVCGMVYAAFAGQPLTIIGSTGPVLAFIAVLYRTAARLAIPFLPLYTWVGLWTAGLLGVCSLFSLSNAVLFFTRFTDEIFSLLISLIFIMEATKDIAGVFTTGGIPLVVATSTLIVSLSTYMVASTLKALRR 615
+ LVEGFG+G+LADIKGKA F SD TDGF++KVLS++FFLFFACLAPAVAFGG+LGV T GAMGTIEMIAATAVCGMVYAA AGQPLTIIGSTGPVLAFIAVLY+TAAR+++PFLPLYTWVG WTAG+LGV S FSLSN VLFFTRFTDEIFSLLIS+IFIMEATKDI GVF + G+PLV ATSTL+V+LSTY VA+ LK+LRR
Sbjct: 290 IKLVEGFGKGLLADIKGKAPFLKSDITDGFSIKVLSTIFFLFFACLAPAVAFGGMLGVATAGAMGTIEMIAATAVCGMVYAALAGQPLTIIGSTGPVLAFIAVLYKTAARMSLPFLPLYTWVGFWTAGMLGVASAFSLSNMVLFFTRFTDEIFSLLISVIFIMEATKDITGVFASAGVPLVAATSTLVVALSTYGVATILKSLRR 494
BLAST of mRNA_H-elongata_contig19465.5413.1 vs. uniprot
Match: A0A835YV61_9STRA (Bicarbonate transporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV61_9STRA) HSP 1 Score: 246 bits (628), Expect = 6.310e-76 Identity = 133/202 (65.84%), Postives = 160/202 (79.21%), Query Frame = 1
Query: 7 LVEGFGRGILADIKGKAGFYASDFTDGFNLKVLSSVFFLFFACLAPAVAFGGLLGVVTGGAMGTIEMIAATAVCGMVYAAFAGQPLTIIGSTGPVLAFIAVLYRTAARLAIPFLPLYTWVGLWTAGLLGVCSLFSLSNAVLFFTRFTDEIFSLLISLIFIMEATKDIAGVFTTGGIPLVVATSTLIVSLSTYMVASTLKALR 612
LVEGFG+G+ DIK +A Y SDFTDG N+K LS+ FFLFFACLAPAVAFGGL+GV T G +GTIEMIAATA CG+VY+ AGQPLTIIGSTGPVLAF AVLY+TA RL +PFLPLY WVGLWT+ LL + SLFSLSN VL+FTRFTDEIF LIS+IFI EA +D++G++ +PL A + V+ +T+ A+ L+ LR
Sbjct: 27 LVEGFGKGLARDIKTRAPSYLSDFTDGLNIKTLSATFFLFFACLAPAVAFGGLMGVTTAGQIGTIEMIAATAGCGVVYSLTAGQPLTIIGSTGPVLAFTAVLYKTAVRLGLPFLPLYAWVGLWTSALLALASLFSLSNMVLYFTRFTDEIFGGLISVIFIYEALRDLSGLYVNPAVPLATALLSSAVAATTFGTATALRGLR 228
BLAST of mRNA_H-elongata_contig19465.5413.1 vs. uniprot
Match: A0A7S4D862_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D862_HETAK) HSP 1 Score: 216 bits (551), Expect = 1.330e-63 Identity = 118/204 (57.84%), Postives = 149/204 (73.04%), Query Frame = 1
Query: 1 LNLVEGFGRGILADIKGKAGFYASDFTDGFNLKVLSSVFFLFFACLAPAVAFGGLLGVVTGGAMGTIEMIAATAVCGMVYAAFAGQPLTIIGSTGPVLAFIAVLYRTAARLAIPFLPLYTWVGLWTAGLLGVCSLFSLSNAVLFFTRFTDEIFSLLISLIFIMEATKDIAGVFTTGGIPLVVATSTLIVSLSTYMVASTLKALR 612
L +VE F +G+ D K KA +Y SD DGFNLK LS+V FLFF C+APAVAFGG+L VT A+GT+EM+ +T+VCGM+YA +GQPLTIIGSTGPVLAF VLYRT A L PFLP+Y W GLW+AG LG+ ++FSLSN V FTRFTDE+FSLLIS IF+ EA + + T +PL +TL+++ +TY A LK ++
Sbjct: 129 LPVVEKFLKGLKRDAKAKAPYYISDIKDGFNLKTLSAVVFLFFGCIAPAVAFGGVLSKVTNNAIGTMEMLLSTSVCGMIYALLSGQPLTIIGSTGPVLAFTGVLYRTCAALGQPFLPVYAWTGLWSAGYLGLAAVFSLSNIVEGFTRFTDEVFSLLISAIFVAEAVQGVLRALTDPLVPLAQGLATLVLATTTYQTAVKLKGIK 332
BLAST of mRNA_H-elongata_contig19465.5413.1 vs. uniprot
Match: A0A4D9DEQ9_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DEQ9_9STRA) HSP 1 Score: 211 bits (536), Expect = 1.410e-61 Identity = 116/197 (58.88%), Postives = 151/197 (76.65%), Query Frame = 1
Query: 25 RGILADIKGKAGFYASDFTDGFNLKVLSSVFFLFFACLAPAVAFGGLLGVVTGGAMGTIEMIAATAVCGMVYAAFAGQPLTIIGSTGPVLAFIAVLYRTAARLAIPFLPLYTWVGLWTAGLLGVCSLFSLSNAVLFFTRFTDEIFSLLISLIFIMEATKDIAGVFTTGGIPLVVATSTLIVSLSTYMVASTLKALRR 615
+GI+ D++ KA Y SDF DG N+K +++ FFLFFACLAPAVAFGGL+G +T G +GT+EM+ ATA G+ YA F+GQPLTIIGSTGPVLAF VLYRTA LA+PFLPLY+WVG+WT+ +L + S+ SLSN V +FTRFTDEIFSLLISLIF+ EA KD++ F + A +L+++++T+ + TL LRR
Sbjct: 112 KGIVEDVRRKAPHYLSDFKDGANVKGVAATFFLFFACLAPAVAFGGLMGKLTEGNIGTMEMLLATASNGIAYALFSGQPLTIIGSTGPVLAFTLVLYRTAQNLALPFLPLYSWVGIWTSLILFLSSVTSLSNLVNYFTRFTDEIFSLLISLIFLYEAVKDLSSFFINPSVGFAKALLSLVIAVTTFNTSITLAGLRR 308
BLAST of mRNA_H-elongata_contig19465.5413.1 vs. uniprot
Match: A0A5B8MFK0_9CHLO (Bicarbonate transporter n=2 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MFK0_9CHLO) HSP 1 Score: 201 bits (512), Expect = 3.100e-58 Identity = 110/205 (53.66%), Postives = 151/205 (73.66%), Query Frame = 1
Query: 1 LNLVEGFGRGILADIKGKAGFYASDFTDGFNLKVLSSVFFLFFACLAPAVAFGGLLGVVTGGAMGTIEMIAATAVCGMVYAAFAGQPLTIIGSTGPVLAFIAVLYRTAARLAIPFLPLYTWVGLWTAGLLGVCSLFSLSNAVL-FFTRFTDEIFSLLISLIFIMEATKDIAGVFTTGGIPLVVATSTLIVSLSTYMVASTLKALR 612
L++VE G+ D+K + FY SD+T+G NLK L+S F+FFACLAPAVAFG LL V T GAMG +EM+ +T++CGMVYA F+GQP+TIIGSTGPVLAF A++Y T ++A+PFL Y WVGLWT+G+LG+C++ S SN V+ + TRFTDEIF+ LIS+IF++EA K+I + G+ A +++ ++ST A +L LR
Sbjct: 80 LSIVETPFVGLKRDLKQRLPFYVSDYTEGLNLKCLASTLFMFFACLAPAVAFGSLLNVKTQGAMGALEMLVSTSICGMVYALFSGQPVTIIGSTGPVLAFTAIMYSTCQQMALPFLSTYAWVGLWTSGILGLCAVTSTSNLVIRYLTRFTDEIFAGLISVIFVVEAMKNIVSLLFNSGVSSSAALLSIMTAISTCAFALSLAGLR 284
BLAST of mRNA_H-elongata_contig19465.5413.1 vs. uniprot
Match: B8BQU6_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BQU6_THAPS) HSP 1 Score: 195 bits (495), Expect = 4.010e-58 Identity = 107/196 (54.59%), Postives = 138/196 (70.41%), Query Frame = 1
Query: 25 RGILADIKGKAGFYASDFTDGFNLKVLSSVFFLFFACLAPAVAFGGLLGVVTGGAMGTIEMIAATAVCGMVYAAFAGQPLTIIGSTGPVLAFIAVLYRTAARLAIPFLPLYTWVGLWTAGLLGVCSLFSLSNAVLFFTRFTDEIFSLLISLIFIMEATKDIAGVFTTGGIPLVVATSTLIVSLSTYMVASTLKALR 612
+GI D K + Y SD TDG N + L+++ FLFFACLAPAV FG L G T GA+GT+EM+++TA+CGM+YA + QPLTIIGSTGPVLAF+A L + A A+PFLPLY W G+WT+G+L S+ S SN V + TRFTDEIFS LIS IF++EA ++I FT T+IV++STY A+TL+ LR
Sbjct: 82 KGIARDYKMRLPLYKSDITDGLNTQCLAAICFLFFACLAPAVGFGALFGTATNGAIGTMEMVSSTAMCGMIYALTSAQPLTIIGSTGPVLAFVAALAKLAEVQALPFLPLYAWTGIWTSGILLASSVTSASNLVKYLTRFTDEIFSTLISFIFVVEAVQNIGKSFTNPASSFTKGLMTVIVAVSTYFTANTLRGLR 277
BLAST of mRNA_H-elongata_contig19465.5413.1 vs. uniprot
Match: A0A7S4PNM8_GUITH (Hypothetical protein n=2 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4PNM8_GUITH) HSP 1 Score: 201 bits (510), Expect = 5.770e-58 Identity = 113/204 (55.39%), Postives = 146/204 (71.57%), Query Frame = 1
Query: 7 LVEGFGRGILADIKGKAGFYASDFTDGFNLKVLSSVFFLFFACLAPAVAFGGLLGVVTGGAMGTIEMIAATAVCGMVYAAFAGQPLTIIGSTGPVLAFIAVLYRTAARLAIPFLPLYTWVGLWTAGLLGVCSLFSLSNAVLFFTRFTDEIFSLLISLIFIMEATKDIAGVFTTGGIPLV--VATSTLIVSLSTYMVASTLKALR 612
LV GFG G+ D+ ++ Y SD DG L+ LS+V FLFFACLAPA+AFGGL+ +TGG +GT+E + +T +CGMVYAAF+GQPLTIIGSTGPVLAF AVLY+ + + +PFLPLY W GLW++ L + S FS SN V TRFTDEIFSLLIS IFI EA K+ +F P +A+S+LI++ S ++ A++L LR
Sbjct: 85 LVRGFGEGLREDVSSRSKLYWSDIKDGLKLQTLSTVAFLFFACLAPALAFGGLMSGMTGGNIGTVEYLMSTGICGMVYAAFSGQPLTIIGSTGPVLAFTAVLYQFSLSMGLPFLPLYAWTGLWSSLFLLMGSFFSFSNVVARLTRFTDEIFSLLISFIFIFEAVKESWKLFAVARTPAAFNIASSSLILASSAFLTATSLSKLR 288
BLAST of mRNA_H-elongata_contig19465.5413.1 vs. uniprot
Match: A0A7S0DU45_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0DU45_9CRYP) HSP 1 Score: 198 bits (503), Expect = 4.090e-57 Identity = 114/204 (55.88%), Postives = 145/204 (71.08%), Query Frame = 1
Query: 7 LVEGFGRGILADIKGKAGFYASDFTDGFNLKVLSSVFFLFFACLAPAVAFGGLLGVVTGGAMGTIEMIAATAVCGMVYAAFAGQPLTIIGSTGPVLAFIAVLYRTAARLAIPFLPLYTWVGLWTAGLLGVCSLFSLSNAVLFFTRFTDEIFSLLISLIFIMEATKDIAGVFTTGGIPLV--VATSTLIVSLSTYMVASTLKALR 612
LV FG G+ D+ K+ Y SD DG L+ LS+V FLFFACLAPA+AFGGL+ +TGG +GT+E + +T VCGM+YAAF+GQPLTIIGSTGPVLAF AVLY+ + + +PFLPLY W GLW++ L + S FS SN V TRFTDEIFSLLIS IFI EA K+ +F P VA+S+LI++ S ++ A++L LR
Sbjct: 63 LVRSFGEGLRQDLHTKSKLYWSDIKDGLKLQTLSTVAFLFFACLAPALAFGGLMSGMTGGNIGTVEYLMSTGVCGMIYAAFSGQPLTIIGSTGPVLAFTAVLYQFSLSIGLPFLPLYAWTGLWSSLFLLLGSFFSFSNVVARLTRFTDEIFSLLISFIFIFEAVKESWKLFAIARTPSAFNVASSSLILATSAFLTATSLSKLR 266
BLAST of mRNA_H-elongata_contig19465.5413.1 vs. uniprot
Match: B7FYF1_PHATC (Predicted protein n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FYF1_PHATC) HSP 1 Score: 197 bits (501), Expect = 1.560e-56 Identity = 109/203 (53.69%), Postives = 143/203 (70.44%), Query Frame = 1
Query: 7 LVEGFGRGILADIKGKAGFYASDFTDGFNLKVLSSVFFLFFACLAPAVAFGGLLGVVTGGAMGTIEMIAATAVCGMVYAAFAGQPLTIIGSTGPVLAFIAVLYRTAARLAIPFLPLYTWVGLWTAGLLGVCSLFSLSNAVLFFTRFTDEIFSLLISLIFIMEATKDIAGVFTTGGIPLVVATSTLIVSLSTYMVASTLKALRR 615
L EG +GI+ D K + +ASD DG N++ L++ FLFFACLAPAV FGGL V TGGA+GT+EM+++TA+CG++YA + QPLTIIGSTGPVLAF+A L + A L +PFL LY+W GLWT+ +L V S+ S SN V + TRFTDEIFSLLIS IF+ EA D+ F++ A TL + ST+ +A+ LK LR+
Sbjct: 90 LFEGPFKGIIRDYKARLPLFASDIKDGLNVQCLAATMFLFFACLAPAVGFGGLFDVATGGAIGTVEMVSSTALCGLIYAITSAQPLTIIGSTGPVLAFVACLAQLAKMLNLPFLQLYSWTGLWTSAILFVSSITSASNLVKYLTRFTDEIFSLLISCIFVFEAVSDVGRTFSSPASTFTKALLTLTCAASTFTIATLLKGLRK 292
BLAST of mRNA_H-elongata_contig19465.5413.1 vs. uniprot
Match: A0A7S3UGS7_9CHLO (Hypothetical protein n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A7S3UGS7_9CHLO) HSP 1 Score: 195 bits (496), Expect = 3.900e-56 Identity = 107/198 (54.04%), Postives = 141/198 (71.21%), Query Frame = 1
Query: 22 GRGILADIKGKAGFYASDFTDGFNLKVLSSVFFLFFACLAPAVAFGGLLGVVTGGAMGTIEMIAATAVCGMVYAAFAGQPLTIIGSTGPVLAFIAVLYRTAARLAIPFLPLYTWVGLWTAGLLGVCSLFSLSNAVLFFTRFTDEIFSLLISLIFIMEATKDIAGVFTTGGIPLVVATSTLIVSLSTYMVASTLKALRR 615
G GI+ D+K KA ++ SDF DG NL+ ++S FFLFF CLAPAVAFGG++ + TGG +G +EMI ATA CG VYA +GQP+TI+GSTGPVLA + LY+ ++PFLP+Y WVGLW++G+L +C+L S SNAV T+FTDE+FS LI+ IFI EA KD ++ VA + +VSL+T VA+TL RR
Sbjct: 57 GVGIVEDVKRKAPWFTSDFKDGINLRGVASTFFLFFGCLAPAVAFGGMMSLATGGLIGAVEMILATAGCGCVYALTSGQPITIVGSTGPVLALTSALYKMCLTYSLPFLPMYAWVGLWSSGMLMLCALTSTSNAVKLLTKFTDEVFSALIAAIFIAEALKDSLSLYLHAESGAEVALLSTLVSLTTLFVATTLANFRR 254 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19465.5413.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig19465.5413.1 >prot_H-elongata_contig19465.5413.1 ID=prot_H-elongata_contig19465.5413.1|Name=mRNA_H-elongata_contig19465.5413.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=206bp LNLVEGFGRGILADIKGKAGFYASDFTDGFNLKVLSSVFFLFFACLAPAVback to top mRNA from alignment at H-elongata_contig19465:688..3698- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig19465.5413.1 ID=mRNA_H-elongata_contig19465.5413.1|Name=mRNA_H-elongata_contig19465.5413.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3011bp|location=Sequence derived from alignment at H-elongata_contig19465:688..3698- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig19465:688..3698- >mRNA_H-elongata_contig19465.5413.1 ID=mRNA_H-elongata_contig19465.5413.1|Name=mRNA_H-elongata_contig19465.5413.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1236bp|location=Sequence derived from alignment at H-elongata_contig19465:688..3698- (Himanthalia elongata Himel1 dioecious)back to top |