mRNA_H-elongata_contig19232.5322.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19232.5322.1
Unique NamemRNA_H-elongata_contig19232.5322.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig19232.5322.1 vs. uniprot
Match: D7G5P3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5P3_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 3.000e-18
Identity = 46/82 (56.10%), Postives = 58/82 (70.73%), Query Frame = 1 
Query:    7 SPADIILSHQEFGLRRWKEYAALKHGNNRRFSGSHHGREILLEIASTIRAQEVRKLQRELKKISTLTKELLNALRSEQADNA 252
            S A   LS Q +GL RWKEYA L+HG N+RF  S HGREIL+E ASTIR +EV  L RELK++  L +EL +AL +EQ + +
Sbjct:  265 SNAGASLSPQTYGLHRWKEYAVLRHGGNKRFVNSQHGREILVETASTIRTKEVADLNRELKEMRALVQELHSALHAEQVEKS 346
[Close]
BLAST of mRNA_H-elongata_contig19232.5322.1 vs. uniprot
Match: A0A6H5KE49_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE49_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 1.900e-9
Identity = 34/62 (54.84%), Postives = 39/62 (62.90%), Query Frame = 1 
Query:    7 SPADIILSHQEFGLRRWKEYAALK--------HGNNRRFSGSHHGREILLEIASTIRAQEVR 168
            S A   +S Q +GL RWKEYA L+        HG N+RF  S HGREIL E ASTIR +EVR
Sbjct:  200 SNAGASVSPQTYGLHRWKEYAVLRQGTPWLVRHGGNKRFVNSQHGREILFETASTIRTKEVR 261
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19232.5322.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G5P3_ECTSI3.000e-1856.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KE49_9PHAE1.900e-954.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19232contigH-elongata_contig19232:1465..2242 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size253
Cds size252
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19232.5322.1prot_H-elongata_contig19232.5322.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19232 1465..2242 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930096.541592-CDS-H-elongata_contig19232:1464..15411622930096.541592-CDS-H-elongata_contig19232:1464..1541Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19232 1465..1541 +
1691679278.7970655-CDS-H-elongata_contig19232:1464..15411691679278.7970655-CDS-H-elongata_contig19232:1464..1541Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19232 1465..1541 +
1622930096.5586061-CDS-H-elongata_contig19232:1790..18751622930096.5586061-CDS-H-elongata_contig19232:1790..1875Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19232 1791..1875 +
1691679278.8051324-CDS-H-elongata_contig19232:1790..18751691679278.8051324-CDS-H-elongata_contig19232:1790..1875Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19232 1791..1875 +
1622930096.5712867-CDS-H-elongata_contig19232:2152..22421622930096.5712867-CDS-H-elongata_contig19232:2152..2242Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19232 2153..2242 +
1691679278.815003-CDS-H-elongata_contig19232:2152..22421691679278.815003-CDS-H-elongata_contig19232:2152..2242Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19232 2153..2242 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19232.5322.1

>prot_H-elongata_contig19232.5322.1 ID=prot_H-elongata_contig19232.5322.1|Name=mRNA_H-elongata_contig19232.5322.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=84bp
GESPADIILSHQEFGLRRWKEYAALKHGNNRRFSGSHHGREILLEIASTI
RAQEVRKLQRELKKISTLTKELLNALRSEQADNA
back to top

mRNA from alignment at H-elongata_contig19232:1465..2242+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19232.5322.1 ID=mRNA_H-elongata_contig19232.5322.1|Name=mRNA_H-elongata_contig19232.5322.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=778bp|location=Sequence derived from alignment at H-elongata_contig19232:1465..2242+ (Himanthalia elongata Himel1 dioecious)
GGAGAATCACCAGCAGATATCATCTTGTCTCACCAAGAATTCGGCTTGCG
CAGGTGGAAAGAGTACGCAGCGTTGAAGTGAGTGAGTTTGCTCTAGTGAA
GGATGGTTTGGGCTTTTACTGATACCTTTCCCCTCGCTAACCGGGAATCT
AGCTCTATTGATCGCTTTGTGGAATACTCTCTCCTCAGGTCTGCCCGATC
TGGCATCATTTTTATCCTCCAACTTGTTGATTGAAAGCTTTTCCATAACC
CATAAAAATTGTACGGGTGGTGCCCACTGTCTAACGGTGTCGCCGGTTCC
CGTCCTGCAACGATTTTGGAACGAAGGCACGGGAACAATCGAAGATTCTC
TGGGAGCCACCACGGACGCGAAATCCTCCTTGAGATCGCGTCAACGATTC
GGGCGCAGGAGGTGACGAATACGACGGCGCTCATCCTGAGAAGAAATGCT
TGTCGTCACGGGTAGATCGGAATCCTATCGCTCATCAATTGTCCACTTCT
CGATCGGCCTCACAAATTTCGCATTTTTCATGATACCGTGTCGGAAAGCG
CAATGATAAGTGGTGTTGTTTCAGAATGCATCTCCTTTGACGCGCATCAG
GGAAGTGTTCGCCGCGTCTTCCGTTTGTTGTTTTGGAACCAAGGCTAACC
GGATGAGCGTCCCGACCGCGCATTGTTTTGCCGAGAAGGTGAGGAAGCTT
CAGCGTGAGCTCAAAAAAATCAGCACTTTGACAAAAGAGCTGCTAAACGC
GCTGCGCTCCGAACAAGCTGATAACGCC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig19232:1465..2242+

>mRNA_H-elongata_contig19232.5322.1 ID=mRNA_H-elongata_contig19232.5322.1|Name=mRNA_H-elongata_contig19232.5322.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=504bp|location=Sequence derived from alignment at H-elongata_contig19232:1465..2242+ (Himanthalia elongata Himel1 dioecious)
GGAGAATCACCAGCAGATATCATCTTGTCTCACCAAGAATTCGGCTTGCG
CAGGTGGAAAGAGTACGCAGCGTTGAAGGAGAATCACCAGCAGATATCAT
CTTGTCTCACCAAGAATTCGGCTTGCGCAGGTGGAAAGAGTACGCAGCGT
TGAAGCACGGGAACAATCGAAGATTCTCTGGGAGCCACCACGGACGCGAA
ATCCTCCTTGAGATCGCGTCAACGATTCGGGCGCAGGAGGCACGGGAACA
ATCGAAGATTCTCTGGGAGCCACCACGGACGCGAAATCCTCCTTGAGATC
GCGTCAACGATTCGGGCGCAGGAGGTGAGGAAGCTTCAGCGTGAGCTCAA
AAAAATCAGCACTTTGACAAAAGAGCTGCTAAACGCGCTGCGCTCCGAAC
AAGCTGATAACGCCGTGAGGAAGCTTCAGCGTGAGCTCAAAAAAATCAGC
ACTTTGACAAAAGAGCTGCTAAACGCGCTGCGCTCCGAACAAGCTGATAA
CGCC
back to top