mRNA_H-elongata_contig19202.5316.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig19202.5316.1 vs. uniprot
Match: D7G850_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G850_ECTSI) HSP 1 Score: 661 bits (1706), Expect = 8.120e-228 Identity = 391/700 (55.86%), Postives = 475/700 (67.86%), Query Frame = 1
Query: 1 QGMASENDMILLSCLPGAPAAGDATSIVRSALQRVIVRPPPAAMHNVGHIRTSPGMAGARRGEGTAQQFRAFFSSAHTAVVDGKFLRAFTATRARIILAGLTPLPVSGR-RGLPTVVAGVADSRSGLCFLGQRANPLGFSAFSIQREYDLESVGDGSAGQSVKIGELMHEHGRMGRASASALYDLWGTANGDNLGGCSRDGAGLRSPLAHLATVWDCSSYATRTLGSPPPPACSSLLVVGGVRAPRAATLVIRRSIEMLTAA----AGPIQAWLTSD-PLGCVNRSDGEA---------STEAEERERVHWNEELEALLSCSENMAEYAMKPRDESTGGDDAADSDTANGEGVDDTAIQERKDGSAVGTAESGAGYEQEAEIRRTDSDFSEKLWELAARRTDVACVRSAISSAFYAVGEGRIFPVVSRDNQTAIGRHIRSGVLLAREARYDNGRSVGVGVAPDEARAEAWRERGFALVSDIQSLADAFVELGVYKVTRDLLSWLETHAGVVAADIDRAFPLTAHDKPSSDDLSEKRSGAGAGVSTTSTYNRRLDRLITLADTVDLVALAQSYGAPWRQLAHPIFWELLLEPTGEEKGDNAGSGEGAEETVSYAMMDASVFQLKGVDEPLVLSGGAARLAQEALEGCPAHLIPEVLSSVAGVDSFAQLKRRQKERREQEAVAVVVDDAVGVFACKHRFIPW 2055
+GMASE+D+I+LSCL APAAG+A S VRSALQ V+VRPP H+ G G A A G G A RA S+++AVVD LRAFTATRAR+ILAGLTP P G R LPTVVAGV+ + GLCFLGQRA P G S+FS +R+ + E+ G Q+++I +L+ E+G ASA ALYDLWG ++GD LG C ++GA +P A LAT WDCS++ATRTLGS PPPACSSLL++GG P + IR +IE L A A P QA + P G G A S + EE+ER W+E+L+ALLS SENMAE+A KP D GG + D+ A G +DTA+Q+R DG VG E G+G ++ E R D DFSE+LWELAAR TDV VRSA++ AF AVGEG++FPV+SRD++TA+G HIR GV +AREARY +G S G DEA+AEAWRERG AL++D SLA AFVELGV+KVTRDLL WLE +AGV+AAD+DRA P TA + D + G+ AG +RRLDRL+TLADT+DLVALAQSYGAPWRQLAHP+FWEL LEP G G G GA ETVSY + +A +FQL G+DEP LSG AAR AQ AL GCPA LIPEVLSSV G +SF +LKRR E + + A V DAV F C+H FIPW
Sbjct: 70 KGMASESDVIILSCLTKAPAAGEAASAVRSALQHVVVRPPSVTTHSPG----PGGRAAAAGGVGVAPTLRAISPSSYSAVVDSNLLRAFTATRARMILAGLTPPPAGGESRTLPTVVAGVSGAPGGLCFLGQRATPEGHSSFSFRRDSEQEAAG--GRAQALRIDDLVREYGGRAHASARALYDLWGDSSGDFLGECLQEGA-KSNPFARLATEWDCSTHATRTLGSAPPPACSSLLLIGGECPPTTVSAKIRGNIEALKTAVERGAAPQQARRKAKGPFGGEKGGTGRAEAHPGGASASGDGEEQERRRWDEDLQALLSGSENMAEFAAKPVDVPVGGGGSDDTLEA-GRAEEDTAVQDRTDGGGVGEEEVGSGMQEVPEKVRGDLDFSERLWELAARATDVEGVRSAVALAFDAVGEGQMFPVISRDSKTAVGCHIRDGVAMAREARYQDGTS---GCLGDEAKAEAWRERGSALLADEDSLASAFVELGVHKVTRDLLHWLEAYAGVLAADVDRALPDTAAAAAAGDRPAPGTGGSAAG-------DRRLDRLLTLADTLDLVALAQSYGAPWRQLAHPVFWELYLEPAG---GSGVG---GAMETVSYTLANAGLFQLSGLDEPPALSGEAARAAQAALSGCPARLIPEVLSSVTGAESFVELKRRLLEHKAKGAT--VGGDAV--FVCEHSFIPW 741
BLAST of mRNA_H-elongata_contig19202.5316.1 vs. uniprot
Match: A0A6H5L254_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L254_9PHAE) HSP 1 Score: 623 bits (1606), Expect = 2.080e-209 Identity = 382/748 (51.07%), Postives = 467/748 (62.43%), Query Frame = 1
Query: 1 QGMASENDMILLSCLPGAPAAGDATSIVRSALQRVIVRPPPAAMHNVGHIRTSPGMAGARRGEGTAQQFRAFFSSAHTAVVDGKFLRAFTATRARIILAGLTPLPVSGR-RGLPTVVAGVADSRSGLCFLGQRANPLGFSAFSIQREYDLESVGDGSAGQSVKIGELMHEHGRMGRASASALYDLWGTANGDNLGGCSRDGAGLRSPLAHLATVWDCSSYATRTLGSPPPPACSSLLVVGGVRAPRAATLVIRRSIEMLTAAA----GPIQAWL-TSDPLGCVNRSDGE---------ASTEAEERERVHWNEELEALLSCSENMAEYAMKPRDESTGGDDAADSDTANGEGVDDTAIQERKDGSAVGTAESGAGYEQEAEIRRTDSDFSEKLWELAARRTDVACVRSAISSAFYAVGEGRIFPVVSRDNQTAIGRHIRSGVLLAREARYDNGRSVGVGVAPDEARAEAWRERGFALVSDIQSLADAFVELGVYKVTRDLLSWLETHAGVVAADIDRAFPLTAH----DKPSSDDLSEKRSGAGAGVSTTSTYNRRLDRLITLADTVDLVALAQSYGAPWRQ-------------------------------------------LAHPIFWELLLEPTGEEKGDNAGSGEGAEETVSYAMMDASVFQLKGVDEPLVLSGGAARLAQEALEGCPAHLIPEVLSSVAGVDSFAQLKRRQKERREQEAVAVVVDDAVGVFACKHRFIPWK 2058
+GMASE+D+I+LSCL AP AG+A S VRSALQ V+VRPP H+ G G A A G G A RA S+++AVVD LRAFTATRAR+ILAGLTP P G R LPTVV GV+ + GLCFLGQRA P G S+FS +R+ + E+ G Q+++I +L+ E+G ASA ALYDLWG ++GD LG C ++GA L SP A LAT WDCS++ATRTLGS PPPACSSLL++GG P + IR I++L A P Q T P G G A + EE+ER W+E+L+ALLS SENMAE+A KP D GG + D+ A G +DTA+Q+R DG +G E G+G ++ E R D DFSE+LWELAAR TDV VRSA++ AF AVGEG+IFPV+SRD++TA+G HIR GV +AREARY +G S +G DEA+AEAWRERG AL++D +LA FVELGV+KVTRDLL WLE +AGV+AAD+DRA P A DKP+ G ++ +RRLDRL+TLADT+DLVALAQSYGAPWRQ LAHP+FWEL LEP G G G GA ETVSY + +A +FQL +DEP LSG AAR AQ AL CPA LIPEVLSSV G +SF +LKRR + A V DAV F C+H FIPW+
Sbjct: 70 KGMASESDVIILSCLTKAPTAGEAASAVRSALQHVVVRPPSVTTHSPG----PGGRAAAAGGVGVAPALRAISPSSYSAVVDSNLLRAFTATRARMILAGLTPPPAEGESRTLPTVVVGVSGAPDGLCFLGQRATPEGHSSFSFRRDSEQEAAG--GRAQALRIDDLVREYGGRAHASARALYDLWGDSSGDFLGECLQEGAKL-SPFARLATEWDCSTHATRTLGSAPPPACSSLLLIGGECPPTTVSAKIRGDIDVLKTAVERGVAPQQTRRKTKGPFGGGRGDTGRDEALPGGTCAPGDGEEQERRRWDEDLQALLSGSENMAEFAAKPVDVPVGGGGSDDALEA-GRAEEDTAVQDRTDGGGLGEEEVGSGMQEVPEKVRGDLDFSERLWELAARATDVKGVRSAVALAFNAVGEGQIFPVISRDSKTAVGCHIRDGVAMAREARYQDGTSACLG---DEAKAEAWRERGSALLADEDALASVFVELGVHKVTRDLLHWLEAYAGVLAADVDRALPAAAAAAVGDKPA------------PGTGGSAARDRRLDRLLTLADTLDLVALAQSYGAPWRQVRSLALSGLTALQRPPVAGPPPSSSPVFSLGLPKPIPPCARCKLAHPVFWELYLEPAG---GSGVG---GAMETVSYTLANAGLFQLSRLDEPPALSGEAARAAQAALSDCPARLIPEVLSSVTGAESFVELKRRLLMHKANGAS--VAGDAV--FVCEHSFIPWR 784
BLAST of mRNA_H-elongata_contig19202.5316.1 vs. uniprot
Match: A0A7S3YDZ2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YDZ2_HETAK) HSP 1 Score: 59.7 bits (143), Expect = 2.080e-7 Identity = 26/69 (37.68%), Postives = 39/69 (56.52%), Query Frame = 1
Query: 1099 IRRTDSDFSEKLWELAARRTDVACVRSAISSAFYAVGEGRIFPVVSRDNQTAIGRHIRSGVLLAREARY 1305
+ R D DF+E+LW++ V F A+ G IFPV+ RDN TA+G ++R G+ +A+ RY
Sbjct: 15 VNRKDLDFTEQLWDVLCLCNTQEDVEGVFEETFQALQNGLIFPVIGRDNNTALGMYLREGLRIAQATRY 83
BLAST of mRNA_H-elongata_contig19202.5316.1 vs. uniprot
Match: A0A1V9YH44_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YH44_9STRA) HSP 1 Score: 61.6 bits (148), Expect = 3.740e-6 Identity = 45/140 (32.14%), Postives = 62/140 (44.29%), Query Frame = 1
Query: 1093 AEIRRTDSDFSEKLWELAARRTD----VACVRSAISSAFYAVGEGRIFPVVSRDNQTAIGRHIRSGVLLAREARYDNGRSVGVGVAPDEARAEAWRERGFALVSDIQSLADAFVELGVYKVTRDLLSWLETHAGVVAADI 1500
A + R D DF EK W L A V V + S F G G + P++ DN + + H+R V + RYD+ +APD A AL D + +++GVYK+ RDL WL GVV D+
Sbjct: 318 ATVLRPDMDFLEKTWHLVAHTAPSTAAVVTVCRELQSCF---GHGSVLPLIHSDNTSDLAGHLRQLVRQVQHERYDHSE-----IAPDAAP---------ALAQDDAACLGYMLQVGVYKLQRDLAHWLGQQ-GVVLPDL 439 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19202.5316.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig19202.5316.1 >prot_H-elongata_contig19202.5316.1 ID=prot_H-elongata_contig19202.5316.1|Name=mRNA_H-elongata_contig19202.5316.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=685bp MASENDMILLSCLPGAPAAGDATSIVRSALQRVIVRPPPAAMHNVGHIRTback to top mRNA from alignment at H-elongata_contig19202:2679..4877+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig19202.5316.1 ID=mRNA_H-elongata_contig19202.5316.1|Name=mRNA_H-elongata_contig19202.5316.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2199bp|location=Sequence derived from alignment at H-elongata_contig19202:2679..4877+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig19202:2679..4877+ >mRNA_H-elongata_contig19202.5316.1 ID=mRNA_H-elongata_contig19202.5316.1|Name=mRNA_H-elongata_contig19202.5316.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=4110bp|location=Sequence derived from alignment at H-elongata_contig19202:2679..4877+ (Himanthalia elongata Himel1 dioecious)back to top |