mRNA_H-elongata_contig19195.5313.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig19195.5313.1 vs. uniprot
Match: A0A6H5JH17_9PHAE (Clu domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JH17_9PHAE) HSP 1 Score: 376 bits (965), Expect = 1.440e-115 Identity = 222/332 (66.87%), Postives = 248/332 (74.70%), Query Frame = 1
Query: 163 MQVRQLLGEVPQTCLYSAFRLVAVAPG------GVRGAGDQDTVWKEEGEVMNDYVELRSIAAVAARPERVQVRMELEAYTTHTARQHVHKFRELLRYPPACPDGVGPGAKLGSGKKGXXXXXXXXXXXXXXXXXXXXXXXXXXAPASPGGAMVETTTASEASHSAA----DPVAEDMAQRVQRALDIRSRLKDSRVPV-GGEGLGCFYKVGLGLAVDEVAHPSKEEVAAASGKGGDKDKDAPITCLRGVSVSAWSPPPPQRRMVGDLMYLEVTALDGTMIHVTCTQGGFYVNGTRRENFDPKPAANNPCHSHELATCLLAYSPSFAKVRAW 1125
MQVRQLLGE+PQTCLYSAFRLVA+ P G G D VWK EG+VMND+VELRSI AVAARPE+V+VRMELE YT TARQH+ KFRELL++PP C DGVGPG K G+G XXXXXXXXXXXXXXX + A+ A+V E +AA DP AE AQR+QRALDIR RLKDSRVPV G EGLG FY VGLGLAV+EVA PS EE KGG KD+D PITCL+GVSVSAW+PPPPQRR+VGDLMYLEV ALDGT+I++TCTQGGFYVNGT R NFDP+P + NPCHSHELA CLLA + SFAK AW
Sbjct: 1 MQVRQLLGEIPQTCLYSAFRLVALTPEPEGTEEGASSGGGGDAVWKREGDVMNDFVELRSIPAVAARPEKVEVRMELEPYTVSTARQHLQKFRELLKFPPPCQDGVGPGVKKGAGXX----XXXXXXXXXXXXXXXKAKESSANSGATAAKAVVAKAEGREGGAAAAVGEVDPAAEAAAQRIQRALDIRGRLKDSRVPVVGAEGLGAFYGVGLGLAVEEVASPSPEE-GGGKDKGG-KDRDGPITCLKGVSVSAWNPPPPQRRLVGDLMYLEVVALDGTVINITCTQGGFYVNGTSRGNFDPRPISGNPCHSHELAVCLLARNSSFAK--AW 324
BLAST of mRNA_H-elongata_contig19195.5313.1 vs. uniprot
Match: A0A836CKQ1_9STRA (Clustered mitochondria-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKQ1_9STRA) HSP 1 Score: 163 bits (412), Expect = 1.640e-40 Identity = 139/353 (39.38%), Postives = 180/353 (50.99%), Query Frame = 1
Query: 88 ITVHPPQKSGAAP-LVLEPLAGVEMVMQVRQLLGEVPQTCLYSAFRLVAVAPGGVRGAGDQDTVWKEEGEVMNDYVELRSIAAVAAR-----------PERVQVRMELEAYTTHTARQHVHKFRELLRYPPACPDGVGPGAKLGSGKKGXXXXXXXXXXXXXXXXXXXXXXXXXXAPASPGGAMVETTTASEASHSAADPVAEDMAQRVQRALDIRSRLKDSRVPVGG-EGLGCFYKVGLGLAVDEVAHPSKEEVAAASGKGGDKDKDAPITCLRGVSVSAWSPPPPQRRMVGDLMYLEVTALDGTMIHVTCTQGGFYVNGTRRENFDPKPAANNPCHSHELATCLLAYSPSF 1107
+ VHPP+ AA ++L+ + EM VRQLL E P+ C ++++L +A G TV E +ND+VEL S+ VAA P ++++ME+E YT R HV +F+ELL YPP DG PG S K XXXXXXXXXXXXXXXXXX A+ A D +RLKD+ +PVG +GL FY V L +++H K A G G CL+ + AW+PPP +RR++GDL+YLEV LD +HVT T GFYVN TR FDP PAA P SH+L TCL++ SPSF
Sbjct: 51 VLVHPPKGCSAAQAILLQGITPTEMAASVRQLLLEAPEVCYMTSYKLHLLAGG--------KTV-----EEINDFVELESLEPVAAALAAAVAQEDAPPPTIEMQMEMEDYTVKKVRDHVKRFKELLMYPPEAADGTVPGDAEASSKARKKLAKTSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEEQA-----------DALARLKDASIPVGRPQGLAAFYDVALAT---DISHVPK---GAGLGAGS--------RCLKSLVFGAWNPPPARRRLLGDLVYLEVVTLDDATLHVTATPAGFYVNNTRHATFDPAPAAV-PHFSHDLLTCLISASPSF 364
BLAST of mRNA_H-elongata_contig19195.5313.1 vs. uniprot
Match: A0A4D9CWV2_9STRA (Clu domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CWV2_9STRA) HSP 1 Score: 105 bits (261), Expect = 8.810e-21 Identity = 101/332 (30.42%), Postives = 139/332 (41.87%), Query Frame = 1
Query: 127 LVLEPLAGVEMVMQVRQLLGEVPQTCLYSAFRLVAVAPGGVRGAGDQDTVWKEEGEVMNDYVELRSIAAVAARPERVQVRMELEAYTTHTARQHVHKFRELLRYPPACPDGVGPGAKLGSGKKGXXXXXXXXXXXXXXXXXXXXXXXXXXAPASPGGAMVETTTAS-----EASHSAADPVAEDMAQRVQRALDIRSRLKDSRVPVGGEGLGCFYKVGLGLAVDEVAHPSKEEVAAASGKGGDKDKDAPITCLRGVSVSAWSPPPPQRRMVGDLMYLEVTALDGTMIHVTCTQGGFYVNGTRRENFDPKPAANNPCHSHELATCLLAYSPSF 1107
L L P+ E+ + V+Q+L E P+ C Y+++ LV V+G+ + + ND+ EL V R+ M LE Y AR HV + +ELL+YPP + P A +GK A A GG V + A+ AD E Q+ RA+ RL PV F V LA P+ E + A CL + S W+PPP RR+ GDL+YLEV A+DG+++H+T GFYVNGTR + FDP P +H+L L A P F
Sbjct: 84 LTLPPVQASEVGLGVKQVLAEYPEACYYTSYALV------VKGSDPRVEI--------NDFTELNEYEGVFRGGARLV--MVLEDYDVRRARTHVRRLKELLQYPPV----LLPSAVKVTGKS---------------------------AGAGAGGTGVSSLGATLPIQARRKKEGADST-EAATQKELRAM--LERLPKVEFPVQISLDKLFPTVAGPLAT-----PAPEFLVPA--------------CLHNLGFSGWNPPPAHRRLQGDLLYLEVQAMDGSVLHLTAVPRGFYVNGTRGQVFDPSPDPAAAHFAHDLLPLLGAALPCF 346
BLAST of mRNA_H-elongata_contig19195.5313.1 vs. uniprot
Match: A0A484EBN9_BRELC (Clu domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EBN9_BRELC) HSP 1 Score: 102 bits (253), Expect = 9.200e-20 Identity = 98/374 (26.20%), Postives = 154/374 (41.18%), Query Frame = 1
Query: 70 EDIAVCITVHPPQKSGAAPLVLEPLAGVEMVMQVRQLLGEVPQTCLYSAFRLVAVAPGGVRGAGDQDTVWKEEGEVMNDYVELRSIAAVAARPERVQVRMELEAYTTHTARQHVHKFRELLRYPPACPDGVGPGAKLGSGKKGXXXXXXXXXXXXXXXXXXXXXXXXXXAPASPGGAMVETTTASEASHSAADPVAEDMAQRVQRALDIRSRLKDSRVPVGGEGLGCFYKVGLGLAV----DEVAHPSKEEVAAASGKGGDKDKDA-----------------------PITCLRGVSVSAWSPPPPQRRMVGDLMYLEVTAL-DGTMIHVTCTQGGFYVNGTRRENFDPKPAANNPCHSHELATCLLAYSPSF 1107
E++A+ I V PP G A + LE L+ + V+ +RQL+ E P Y+ + L A ++ + E +ND+VEL V + V +R+ L+ Y AR HV +FR++L PP + A G K T +S+ S + E +++R +I L+ +PV E L FY + +AV E S + SGK +++ P+ C++ ++ S ++PPP R++VGDL+YLEV D T+ H+T GF+VN + +FDP+P P SH L L SP+F
Sbjct: 26 EEVALSILVAPPITEGQA-VRLEGLSPSDTVLSLRQLIAEFPMLACYTCYHLEA------------KSLTSDSWEPLNDFVELSENENVV---DGVTLRIVLDKYDARNARAHVRRFRDVLSNPPIPQETFEREATPGVSDK--------------------------------------TEMSSDGSKMNEKNLDEISKHQLERLREIHYNLESIEIPVLPE-LVEFYSIPGAVAVTKERSEQIEKSNKNNEMKSGKKSKRNQQKVKQQQHIETNEQKKKEQQPEAKLPV-CIKSITYSGYNPPPGPRKLVGDLLYLEVNVNGDNTLYHITAHVDGFFVNSSTITHFDPRPNETTPSPSHLLVDLLSNVSPTF 343
BLAST of mRNA_H-elongata_contig19195.5313.1 vs. uniprot
Match: M4BM91_HYAAE (Clu domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BM91_HYAAE) HSP 1 Score: 94.0 bits (232), Expect = 4.510e-17 Identity = 94/375 (25.07%), Postives = 145/375 (38.67%), Query Frame = 1
Query: 70 EDIAVCITVHPPQKSGAAPLVLEPLAGVEMVMQVRQLLGEVPQTCLYSAFRLVAVAPGGVRGAGDQDTVWKEEGEVMNDYVELRSIAAVAARPERVQVRMELEAYTTHTARQHVHKFRELLRYPPACPDGVGPGAKLGSGKKGXXXXXXXXXXXXXXXXXXXXXXXXXXAPASPGGAMVETTTASEASHSAADPVAEDMAQRVQRALDIRSRLKDSRVPVGGEGLGCFYKV-GLGLAVDEVAHPSKEEVAAASGK----------------------GGDKDKDAPIT-----CLRGVSVSAWSPPPPQRRMVGDLMYLEVT-ALDGTMIHVTCTQGGFYVNGTRRENFDPKPAANNPCHSHELATCLLAYSPSF 1107
E + + PP + + LE ++ + V+ +RQLL E P Y+ + L A + D W+ +NDYVEL V V +RM L+ Y R HV +FRE+L PP P + +P+ G+ TA+E + E Q+++R +I +L+ VPV + L FY G A E A + V K G K ++ + CL+ + S ++PPP R++VGDL+YLEV A + T H+T GF+VN + FDP+P + ++ L L + S F
Sbjct: 19 ESVFSVLVAPPPSAPSSGTVRLESVSPADTVVTLRQLLAEFPALACYTCYHLEAKSL--------TDDTWQP----LNDYVELGDYETVT---NGVTLRMVLDKYDARKVRAHVRRFREVLTNPPIPPLAI-----------------------------------ELESPSDAVGSKDNEPTATEGEEMQDKKLKEVSEQQLKRLREIHYKLEGIEVPVVPD-LADFYSFPGASPAAQEEAEQVESAVKGKDQKXXXXXXXXXXXXXXXXXXLIEAGERKQQEHSVNAKLPVCLKSIVFSGYNPPPGPRKLVGDLLYLEVVVAGENTPYHITAHVDGFFVNRSTAIEFDPRPDMTDAGYTQLLVDLLSSVSSKF 342
BLAST of mRNA_H-elongata_contig19195.5313.1 vs. uniprot
Match: A0A1S8W761_9FUNG (Clu domain-containing protein n=1 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8W761_9FUNG) HSP 1 Score: 83.6 bits (205), Expect = 1.200e-13 Identity = 37/84 (44.05%), Postives = 53/84 (63.10%), Query Frame = 1
Query: 856 PITCLRGVSVSAWSPPPPQRRMVGDLMYLEVTALDGTMIHVTCTQGGFYVNGTRRENFDPKPAANNPCHSHELATCLLAYSPSF 1107
P +CL+ +++S+W+PPP QRRM GDL+YL ++ L+G ++ VT + GFY+NG+ FDP P P H L L SP F
Sbjct: 323 PESCLQSIALSSWNPPPLQRRMAGDLLYLSISILEGIVLEVTASVSGFYINGSSSTVFDPLPNKETPDLVHMLPLLLSQASPKF 406
BLAST of mRNA_H-elongata_contig19195.5313.1 vs. uniprot
Match: A0A3Q2E3U2_CYPVA (Clustered mitochondria protein homolog n=1 Tax=Cyprinodon variegatus TaxID=28743 RepID=A0A3Q2E3U2_CYPVA) HSP 1 Score: 80.1 bits (196), Expect = 9.600e-13 Identity = 41/92 (44.57%), Postives = 57/92 (61.96%), Query Frame = 1
Query: 841 KDKDAPITCLRGVSVSAWSPPPPQRRMVGDLMYLEVTALDGTMIHVTCTQGGFYVNGTRRENFDPKPAANNP-CHSHELATCLLAYSPSFAK 1113
+D P+ CLR ++ S+W+PPP R+M GDLMY+ V L+ + +TC+ GFY+N + NF+PKPAA CHS L L SP+F K
Sbjct: 58 RDDWKPLQCLRVLTTSSWNPPPGNRKMHGDLMYVSVLTLEDRELSITCSTRGFYLNQSTAFNFNPKPAAPKIICHS--LIELLKQLSPAFKK 147
BLAST of mRNA_H-elongata_contig19195.5313.1 vs. uniprot
Match: A0A4P9W6Z1_9FUNG (Clustered mitochondria-domain-containing protein n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4P9W6Z1_9FUNG) HSP 1 Score: 80.5 bits (197), Expect = 1.010e-12 Identity = 39/87 (44.83%), Postives = 50/87 (57.47%), Query Frame = 1
Query: 850 DAPITCLRGVSVSAWSPPPPQRRMVGDLMYLEVTALDGTMIHVTCTQGGFYVNGTRRENFDPKPAANNPCHSHELATCLLAYSPSFA 1110
+A TC R +S W+PPP QRR+ GDLMYL VT L+ H+TC+ GF+ N + +FDP P + C H L L SP FA
Sbjct: 267 EARETCFRQFGLSVWNPPPFQRRLAGDLMYLTVTTLEKDTYHITCSVSGFFANQSNGRDFDPTPRPKS-CLHHSLPGMLALLSPLFA 352
BLAST of mRNA_H-elongata_contig19195.5313.1 vs. uniprot
Match: A0A6P7Z200_9AMPH (Clustered mitochondria protein homolog n=3 Tax=Microcaecilia unicolor TaxID=1415580 RepID=A0A6P7Z200_9AMPH) HSP 1 Score: 80.5 bits (197), Expect = 1.210e-12 Identity = 39/87 (44.83%), Postives = 54/87 (62.07%), Query Frame = 1
Query: 856 PITCLRGVSVSAWSPPPPQRRMVGDLMYLEVTALDGTMIHVTCTQGGFYVNGTRRENFDPKPAANNPCH-SHELATCLLAYSPSFAK 1113
P+ CL+ + +S W+PPP R+M GDLMYL V ++ IH+T + GFY+N + + F+PKPA NP H H L L SP+F K
Sbjct: 230 PLQCLKALMMSGWNPPPGNRKMHGDLMYLSVFTMEDHHIHITASNRGFYINQSTDDIFNPKPA--NPSHLCHSLVELLGLISPAFKK 314
BLAST of mRNA_H-elongata_contig19195.5313.1 vs. uniprot
Match: UPI000742B6BB (clustered mitochondria protein homolog n=1 Tax=Cyprinodon variegatus TaxID=28743 RepID=UPI000742B6BB) HSP 1 Score: 80.1 bits (196), Expect = 1.380e-12 Identity = 41/92 (44.57%), Postives = 57/92 (61.96%), Query Frame = 1
Query: 841 KDKDAPITCLRGVSVSAWSPPPPQRRMVGDLMYLEVTALDGTMIHVTCTQGGFYVNGTRRENFDPKPAANNP-CHSHELATCLLAYSPSFAK 1113
+D P+ CLR ++ S+W+PPP R+M GDLMY+ V L+ + +TC+ GFY+N + NF+PKPAA CHS L L SP+F K
Sbjct: 328 RDDWKPLQCLRVLTTSSWNPPPGNRKMHGDLMYVSVLTLEDRELSITCSTRGFYLNQSTAFNFNPKPAAPKIICHS--LIELLKQLSPAFKK 417 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19195.5313.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig19195.5313.1 >prot_H-elongata_contig19195.5313.1 ID=prot_H-elongata_contig19195.5313.1|Name=mRNA_H-elongata_contig19195.5313.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=375bp DETSSEAIIKSDGSKSLGDGEEEEDIAVCITVHPPQKSGAAPLVLEPLAGback to top mRNA from alignment at H-elongata_contig19195:103..2941- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig19195.5313.1 ID=mRNA_H-elongata_contig19195.5313.1|Name=mRNA_H-elongata_contig19195.5313.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2839bp|location=Sequence derived from alignment at H-elongata_contig19195:103..2941- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig19195:103..2941- >mRNA_H-elongata_contig19195.5313.1 ID=mRNA_H-elongata_contig19195.5313.1|Name=mRNA_H-elongata_contig19195.5313.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2250bp|location=Sequence derived from alignment at H-elongata_contig19195:103..2941- (Himanthalia elongata Himel1 dioecious)back to top |