mRNA_H-elongata_contig191737.5305.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig191737.5305.1
Unique NamemRNA_H-elongata_contig191737.5305.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig191737.5305.1 vs. uniprot
Match: A0A6H5JBE8_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE8_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 2.060e-16
Identity = 43/68 (63.24%), Postives = 48/68 (70.59%), Query Frame = 1 
Query:    1 QDIEVDASAEDLPVEWVKKQRKNGSFYYYHVMTGATQESSPNGFGDANTVTGVPAVPQRPSQLARIFQ 204
            QD+E+DAS EDLPVEWVKKQR NGS YY++VMTGA Q +SPN   DA    G  A P   S L RIFQ
Sbjct:  429 QDVEIDASGEDLPVEWVKKQRPNGSIYYFNVMTGAKQTASPNRLDDA----GGAAPPPSNSALRRIFQ 492
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BLAST of mRNA_H-elongata_contig191737.5305.1 vs. uniprot
Match: D7FP34_ECTSI (Similar to neural cell expressed, developmentally down-regulated 4-like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP34_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 5.220e-16
Identity = 46/77 (59.74%), Postives = 52/77 (67.53%), Query Frame = 1 
Query:    1 QDIEVDASAEDLPVEWVKKQRKNGSFYYYHVMTGATQESSPNGFGDANTVTGVPAVPQRPSQLARIFQ--TSPRPQS 225
            QD+E+DAS EDLPVEWVKKQR NGS YY++VMTGA Q +SPN   +A    G  A P   S L RIFQ   S RP S
Sbjct:  376 QDVEIDASEEDLPVEWVKKQRPNGSIYYFNVMTGAKQTASPNHLDNA----GGSAPPPSNSALGRIFQGNRSARPNS 448
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BLAST of mRNA_H-elongata_contig191737.5305.1 vs. uniprot
Match: D8LQB8_ECTSI (WW domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQB8_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 2.830e-11
Identity = 34/67 (50.75%), Postives = 47/67 (70.15%), Query Frame = 1 
Query:    4 DIEVDASAEDLPVEWVKKQRKNGSFYYYHVMTGATQESSPNGFGDANTVTGVPAVPQRPSQLARIFQ 204
            D+E+DAS EDLP+ WVK+QRKNG+ YYY+++TG  +E+SP     A    GV   P+R S +AR F+
Sbjct:  389 DVEIDASNEDLPIGWVKRQRKNGTTYYYNLLTGDARENSPTE-AHAVVAVGVTPAPKRRS-IARAFR 453
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BLAST of mRNA_H-elongata_contig191737.5305.1 vs. uniprot
Match: D7FP33_ECTSI (E3 ubiquitin-protein ligase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP33_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 3.910e-11
Identity = 29/47 (61.70%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:    1 QDIEVDASAEDLPVEWVKKQRKNGSFYYYHVMTGATQESSPNGFGDA 141
            QDIE+DAS EDLP +WVKKQR NGS YY+H +TG  Q + P+  G A
Sbjct:  382 QDIELDASEEDLPADWVKKQRANGSIYYFHPLTGKKQSTPPDALGSA 428
[Close]
BLAST of mRNA_H-elongata_contig191737.5305.1 vs. uniprot
Match: A0A6H5JSI3_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSI3_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 5.330e-11
Identity = 34/72 (47.22%), Postives = 47/72 (65.28%), Query Frame = 1 
Query:    4 DIEVDASAEDLPVEWVKKQRKNGSFYYYHVMTGATQESSPNGFGDANTVTGVPAVPQRPSQLARIFQTSPRP 219
            D+E+D S EDLP+ WVK+QRKNG+ YYY+ +TG  +E+SP     A    GV   P+R S +AR F+ +  P
Sbjct:  420 DVEIDTSNEDLPIGWVKRQRKNGTTYYYNPLTGDARENSPTE-AHAVVAVGVTPAPERRS-IARAFRAAHNP 489
[Close]
BLAST of mRNA_H-elongata_contig191737.5305.1 vs. uniprot
Match: A0A6H5JZ12_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ12_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 9.990e-11
Identity = 28/47 (59.57%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:    1 QDIEVDASAEDLPVEWVKKQRKNGSFYYYHVMTGATQESSPNGFGDA 141
            QDIE+D+S EDLP +WVKKQR NGS YY+H +TG  Q + P+  G A
Sbjct:  412 QDIELDSSEEDLPADWVKKQRANGSIYYFHPLTGKKQSTPPDALGSA 458
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig191737.5305.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JBE8_9PHAE2.060e-1663.24WW domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D7FP34_ECTSI5.220e-1659.74Similar to neural cell expressed, developmentally ... [more]
D8LQB8_ECTSI2.830e-1150.75WW domain-containing protein n=1 Tax=Ectocarpus si... [more]
D7FP33_ECTSI3.910e-1161.70E3 ubiquitin-protein ligase, putative n=1 Tax=Ecto... [more]
A0A6H5JSI3_9PHAE5.330e-1147.22WW domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A6H5JZ12_9PHAE9.990e-1159.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig191737contigH-elongata_contig191737:3..765 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.4
Seed ortholog evalue3.5e-09
Seed eggNOG ortholog2880.D7FP33
EggNOG free text desc.ubiquitin protein ligase activity
EggNOG OGsCOG5021@1,KOG0940@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size244
Cds size243
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930094.2992258-CDS-H-elongata_contig191737:2..2061622930094.2992258-CDS-H-elongata_contig191737:2..206Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig191737 3..206 +
1691679277.9785516-CDS-H-elongata_contig191737:2..2061691679277.9785516-CDS-H-elongata_contig191737:2..206Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig191737 3..206 +
1622930094.3189442-CDS-H-elongata_contig191737:725..7641622930094.3189442-CDS-H-elongata_contig191737:725..764Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig191737 726..764 +
1691679277.9894102-CDS-H-elongata_contig191737:725..7641691679277.9894102-CDS-H-elongata_contig191737:725..764Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig191737 726..764 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig191737.5305.1prot_H-elongata_contig191737.5305.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig191737 3..764 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig191737.5305.1

>prot_H-elongata_contig191737.5305.1 ID=prot_H-elongata_contig191737.5305.1|Name=mRNA_H-elongata_contig191737.5305.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
QDIEVDASAEDLPVEWVKKQRKNGSFYYYHVMTGATQESSPNGFGDANTV
TGVPAVPQRPSQLARIFQTSPRPQSIAPLDR
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mRNA from alignment at H-elongata_contig191737:3..765+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig191737.5305.1 ID=mRNA_H-elongata_contig191737.5305.1|Name=mRNA_H-elongata_contig191737.5305.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=763bp|location=Sequence derived from alignment at H-elongata_contig191737:3..765+ (Himanthalia elongata Himel1 dioecious)
CAGGATATCGAGGTAGACGCGTCGGCGGAGGATCTCCCGGTGGAGTGGGT
GAAGAAGCAGCGTAAGAATGGGAGCTTCTACTACTACCATGTTATGACCG
GCGCCACGCAAGAAAGTTCACCAAATGGATTTGGTGACGCGAACACTGTA
ACCGGAGTGCCAGCAGTACCGCAGCGTCCCAGTCAACTCGCACGGATCTT
CCAGGTGAGATGAGGATGGTAGCATGCGAGTTGTGGCCAATCGGGATTGG
AACTCATTGCCAGCTACTTGTTAAATACAGCGCCATATTGATGATATCGT
ATCAATAGTAAGAGGCCTCCGTTCCGACGTCACAAACATATTTTCTATTC
CTTGCAGTCGACGAGGTATATTAAGCAGAAGGTGTGCACACCTCGAAAAC
TAAGGGACATAGAGTTTTGTTCACCGAGGTAGGCATAGTAGTTAAAATGC
CACAACATATGATACGCTCAAAAAATAGTTTCTGAGTCATCATATGGATG
AGGCTCGGTCACGCGTCGCCTGAAAATACTTCAAAATGGACGACTGACGA
AAAGTAATCATTTTTGGTCACATTATTTTTTATCTCGAAAACCTCCGATC
GGACAAAAAGTTCTTCGCAAGCGTTGTTTAACTGTGTTCATTCTATGACA
GTGCCCTCCCCCCTCGCCCACGCCCCCCTTTTTTCCCTTCTCCTGCTGTT
CTTTGTCCTCAATCGCATCGTAGACGTCACCGAGACCGCAGTCCATAGCA
CCTCTTGATCGCT
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Coding sequence (CDS) from alignment at H-elongata_contig191737:3..765+

>mRNA_H-elongata_contig191737.5305.1 ID=mRNA_H-elongata_contig191737.5305.1|Name=mRNA_H-elongata_contig191737.5305.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig191737:3..765+ (Himanthalia elongata Himel1 dioecious)
CAGGATATCGAGGTAGACGCGTCGGCGGAGGATCTCCCGGTGGAGTGGGT
GAAGAAGCAGCGTAAGAATGGGAGCTTCTACTACTACCATGTTATGACCG
GCGCCACGCAAGAAAGTTCACCAAATGGATTTGGTGACGCGAACACTGTA
ACCGGAGTGCCAGCAGTACCGCAGCGTCCCAGTCAACTCGCACGGATCTT
CCAGCAGGATATCGAGGTAGACGCGTCGGCGGAGGATCTCCCGGTGGAGT
GGGTGAAGAAGCAGCGTAAGAATGGGAGCTTCTACTACTACCATGTTATG
ACCGGCGCCACGCAAGAAAGTTCACCAAATGGATTTGGTGACGCGAACAC
TGTAACCGGAGTGCCAGCAGTACCGCAGCGTCCCAGTCAACTCGCACGGA
TCTTCCAGACGTCACCGAGACCGCAGTCCATAGCACCTCTTGATCGCACG
TCACCGAGACCGCAGTCCATAGCACCTCTTGATCGC
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