mRNA_H-elongata_contig191390.5289.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig191390.5289.1
Unique NamemRNA_H-elongata_contig191390.5289.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig191390.5289.1 vs. uniprot
Match: A0A6H5LEA9_9PHAE (DAO domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LEA9_9PHAE)

HSP 1 Score: 203 bits (516), Expect = 9.930e-58
Identity = 106/148 (71.62%), Postives = 118/148 (79.73%), Query Frame = 1
Query:   91 VMRNSMTDFRIEKDVVVIGGGLAGLSTALELAKRGRQVTVLSRSRAEAAAEAAGGMIAPQAERLESGVYLDLCLASRAMYPEWVSGIEAIAGRDGEVA---------RAHLFSCGGFMSPAFDGDAVHVWNPPAEAGHAQWFDREQVL 507
            ++ ++++D RI KDVVVIGGGLAGLSTALELAKRG+QVTVLSR+RAEAAAEAAGGMIAPQAERLESG YLDLCL SRAMY EWV  IEAIAG  GE A         R H +S GGFMSPAF+GDAVHVW+PP E G A W  R+Q L
Sbjct:   39 MLGSTISDVRIHKDVVVIGGGLAGLSTALELAKRGKQVTVLSRNRAEAAAEAAGGMIAPQAERLESGPYLDLCLTSRAMYAEWVRSIEAIAGMGGETAGEQTAAETTRTHFWSSGGFMSPAFEGDAVHVWSPPPEGGQAHWIGRDQAL 186          
BLAST of mRNA_H-elongata_contig191390.5289.1 vs. uniprot
Match: R1BK16_EMIHU (DAO domain-containing protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BK16_EMIHU)

HSP 1 Score: 127 bits (320), Expect = 2.150e-32
Identity = 66/124 (53.23%), Postives = 85/124 (68.55%), Query Frame = 1
Query:  127 KDVVVIGGGLAGLSTALELAKRGRQVTVLSRSRAEAAAEAAGGMIAPQAERLESGVYLDLCLASRAMYPEWVSGIEAIAGRDGEVARAHLFSCGGFMSPAFDGDAVHVWNPPAEAGHAQWFDRE 498
            +  +V+GGG +GLS ALELA RG  V+VLSR  +E A  AAGGM+APQAERLE G  LDLC+ +R+ +P W+  +E ++G D     A+L S GGF++PAF+GDAV  W PPA  G A W   E
Sbjct:    2 RSALVVGGGASGLSCALELAGRGWSVSVLSRDTSEGATRAAGGMLAPQAERLEEGPLLDLCVRARSHFPPWLQRVERLSGVD-----ANLCSRGGFLAPAFEGDAVQRWRPPAAGGPATWLGPE 120          
BLAST of mRNA_H-elongata_contig191390.5289.1 vs. uniprot
Match: W7U8T7_9STRA (Glycine oxidase n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U8T7_9STRA)

HSP 1 Score: 130 bits (326), Expect = 5.240e-32
Identity = 71/125 (56.80%), Postives = 87/125 (69.60%), Query Frame = 1
Query:  130 DVVVIGGGLAGLSTALELAKRGRQVTVLSRSRAEAAAEAAGGMIAPQAERLESGVYLDLCLASRAMYPEWVSGIEAIAGRDGEVARAHLFSCGGFMSPAFDGDAVHVWNPPAEAGHAQWFDREQV 504
            DV+VIGGGLAGLSTALEL++RG +V V+SR  AE+A+ AAGGM+APQAERLE+G YLDLCL SR MY EW + +E  +G           + GGF++PAF GD V  W PP  AG A   D  Q+
Sbjct:   79 DVLVIGGGLAGLSTALELSQRGAKVVVVSRDEAESASMAAGGMLAPQAERLEAGPYLDLCLQSRDMYSEWAADLEQWSGG----ISTGFAAAGGFLAPAFTGDQVDGWVPPPGAGPAYRLDGPQI 199          
BLAST of mRNA_H-elongata_contig191390.5289.1 vs. uniprot
Match: A0A4D9DFC1_9STRA (DAO domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DFC1_9STRA)

HSP 1 Score: 130 bits (326), Expect = 8.380e-32
Identity = 70/125 (56.00%), Postives = 88/125 (70.40%), Query Frame = 1
Query:  130 DVVVIGGGLAGLSTALELAKRGRQVTVLSRSRAEAAAEAAGGMIAPQAERLESGVYLDLCLASRAMYPEWVSGIEAIAGRDGEVARAHLFSCGGFMSPAFDGDAVHVWNPPAEAGHAQWFDREQV 504
            DV+VIGGGLAGLSTALEL++RG +V V+SR  AE+A+ AAGGM+APQAERLE+G YLDLCL SR MY EW + +E  +G           + GGF++PAF GD V  W PP+ AG A   D  ++
Sbjct:   11 DVLVIGGGLAGLSTALELSQRGAKVVVVSRDEAESASMAAGGMLAPQAERLEAGPYLDLCLQSRDMYSEWAADLEQWSGG----ISTGFAAAGGFLAPAFTGDQVDSWVPPSGAGPAYRLDGPEI 131          
BLAST of mRNA_H-elongata_contig191390.5289.1 vs. uniprot
Match: A0A7S4BD87_CHRCT (Hypothetical protein (Fragment) n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BD87_CHRCT)

HSP 1 Score: 125 bits (313), Expect = 2.710e-30
Identity = 69/129 (53.49%), Postives = 86/129 (66.67%), Query Frame = 1
Query:  124 EKDVVVIGGGLAGLSTALELAKRGRQVTVLSRSRAEAAAEAAGGMIAPQAERLESGVYLDLCLASRAMYPEWVSGIEAIAG--RDGEVARAHLFSCGGFMSPAFDGDAVHVWNPPAEAGHAQWFDREQV 504
            E+  +V+GGG+AGLS ALEL  RG +VT+LSR  +E+A  AAGGM+APQAERL  G  LDLCL +R  +  W+  +EA AG    G VAR      GGF+SPAFDGDAV  W PP  AG A W   +++
Sbjct:   88 ERSALVVGGGVAGLSVALELRTRGWEVTLLSRQSSESATLAAGGMLAPQAERLSPGPLLDLCLRAREEFAPWLRSVEARAGGVNTGPVAR------GGFVSPAFDGDAVARWQPPMHAGPATWLGGDEM 210          
BLAST of mRNA_H-elongata_contig191390.5289.1 vs. uniprot
Match: A0A7S4BD54_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BD54_CHRCT)

HSP 1 Score: 125 bits (313), Expect = 4.650e-30
Identity = 69/129 (53.49%), Postives = 86/129 (66.67%), Query Frame = 1
Query:  124 EKDVVVIGGGLAGLSTALELAKRGRQVTVLSRSRAEAAAEAAGGMIAPQAERLESGVYLDLCLASRAMYPEWVSGIEAIAG--RDGEVARAHLFSCGGFMSPAFDGDAVHVWNPPAEAGHAQWFDREQV 504
            E+  +V+GGG+AGLS ALEL  RG +VT+LSR  +E+A  AAGGM+APQAERL  G  LDLCL +R  +  W+  +EA AG    G VAR      GGF+SPAFDGDAV  W PP  AG A W   +++
Sbjct:   88 ERSALVVGGGVAGLSVALELRTRGWEVTLLSRQSSESATLAAGGMLAPQAERLSPGPLLDLCLRAREEFAPWLRSVEARAGGVNTGPVAR------GGFVSPAFDGDAVARWQPPMHAGPATWLGGDEM 210          
BLAST of mRNA_H-elongata_contig191390.5289.1 vs. uniprot
Match: A0A8J2WY37_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WY37_9STRA)

HSP 1 Score: 117 bits (294), Expect = 1.250e-27
Identity = 61/122 (50.00%), Postives = 84/122 (68.85%), Query Frame = 1
Query:  130 DVVVIGGGLAGLSTALELAKRGRQVTVLSRSRAEAAAEAAGGMIAPQAERLESGVYLDLCLASRAMYPEWVSGIEAIAGRDGEVARAHLFSCGGFMSPAFD-GDAVHVWNPPAEAGHAQWFD 492
            DVVV+GGG++GL+TALELA+RGR V V+SR  A++A  AAGGM+APQAERLE G  LDLC+ +R  +P W+  ++A         R  L + GGF+SP+   G ++  W PP+ AG ++W D
Sbjct:   29 DVVVVGGGISGLATALELARRGRSVRVVSRDLAKSATLAAGGMLAPQAERLEEGPLLDLCVQAREAWPSWLDTLDA--------PRPTLNAVGGFVSPSLTPGSSIESWRPPSSAGPSEWLD 142          
BLAST of mRNA_H-elongata_contig191390.5289.1 vs. uniprot
Match: A0A7S0IR73_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0IR73_9EUKA)

HSP 1 Score: 117 bits (293), Expect = 2.170e-27
Identity = 61/122 (50.00%), Postives = 81/122 (66.39%), Query Frame = 1
Query:  139 VIGGGLAGLSTALELAKRGRQVTVLSRSRAEAAAEAAGGMIAPQAERLESGVYLDLCLASRAMYPEWVSGIEAIAGRDGEVARAHLFSCGGFMSPAFDGDAVHVWNPPAEAGHAQWFDREQV 504
            V+GGG+AGLS A ELA RG  V V+ R R+E+A  +AGGM+APQAERL+ G  L LCL +RA +  W+  +E  AG     A A L + GGF++PA+ GDAV  W PPA AG + W + + +
Sbjct:   57 VVGGGIAGLSVAFELASRGWSVRVICRDRSESATLSAGGMLAPQAERLDEGPLLQLCLRARAHFQPWLRDVEGKAG-----ANAGLVARGGFIAPAYAGDAVERWTPPAAAGPSSWLEGDML 173          
BLAST of mRNA_H-elongata_contig191390.5289.1 vs. uniprot
Match: M2Y249_GALSU (Glycine oxidase ThiO n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y249_GALSU)

HSP 1 Score: 113 bits (283), Expect = 4.160e-26
Identity = 59/138 (42.75%), Postives = 83/138 (60.14%), Query Frame = 1
Query:   97 RNSMTDFRIEKDVVVIGGGLAGLSTALELAKRGRQVTVLSRSRAEAAAEAAGGMIAPQAERLESGVYLDLCLASRAMYPEWVSGIEAIAGRDGEVARAHLFSCGGFMSPAFDGDAVHVWNPPAEAGHAQWFDREQVLL 510
            R+  T  +   D++VIGGGL GLS A E AK G ++TV+      +A  AA GM+APQ ERLE    L LC++SR++YP +V  +E  +G   +      FS  GF+ P+F  DAV  W PP + GH QW  ++++LL
Sbjct:   25 RHIQTSTKHSSDLIVIGGGLIGLSIAWEAAKLGAKITVVVGDGNASATVAAAGMLAPQGERLEQSALLKLCVSSRSLYPAFVEEVERTSGMSTD------FSSSGFICPSFGDDAVSTWKPPIQGGHHQWLSKKELLL 156          
BLAST of mRNA_H-elongata_contig191390.5289.1 vs. uniprot
Match: F0YGW8_AURAN (Mitogen-activated protein kinase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YGW8_AURAN)

HSP 1 Score: 111 bits (278), Expect = 2.380e-25
Identity = 66/142 (46.48%), Postives = 86/142 (60.56%), Query Frame = 1
Query:   70 RRKFPQSVMRNSMTDFRIEKDVVVIGGGLAGLSTALELAKRGRQVTVLSRSRAEAAAEAAGGMIAPQAERLESGVYLDLCLASRAMYPEWVSGIEAIAGRDGEVARAHLFSCGGFMSPAFD-GDAVHVWNPPAEAGHAQWFD 492
            R   P++ +R+S        DVVV+GGG++GLSTALEL +RGR V VLSR  A+AA  AAGGM+APQAERL  G  LDLC+ SR  +P W++ ++             L + GGF+SP  D  D V  W P   AG A+W +
Sbjct:   17 RAPAPRASLRSSTA-----YDVVVVGGGMSGLSTALELRRRGRSVCVLSRDLAQAATLAAGGMLAPQAERLPGGPLLDLCVRSREAWPAWLATLDD---------PPPLHAVGGFVSPCLDVNDPVGTWKPVEAAGPAEWLE 144          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig191390.5289.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LEA9_9PHAE9.930e-5871.62DAO domain-containing protein n=2 Tax=Ectocarpus T... [more]
R1BK16_EMIHU2.150e-3253.23DAO domain-containing protein (Fragment) n=1 Tax=E... [more]
W7U8T7_9STRA5.240e-3256.80Glycine oxidase n=2 Tax=Nannochloropsis gaditana T... [more]
A0A4D9DFC1_9STRA8.380e-3256.00DAO domain-containing protein n=1 Tax=Nannochlorop... [more]
A0A7S4BD87_CHRCT2.710e-3053.49Hypothetical protein (Fragment) n=1 Tax=Chrysotila... [more]
A0A7S4BD54_CHRCT4.650e-3053.49Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A8J2WY37_9STRA1.250e-2750.00Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S0IR73_9EUKA2.170e-2750.00Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
M2Y249_GALSU4.160e-2642.75Glycine oxidase ThiO n=1 Tax=Galdieria sulphuraria... [more]
F0YGW8_AURAN2.380e-2546.48Mitogen-activated protein kinase n=1 Tax=Aureococc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig191390contigH-elongata_contig191390:303..812 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score205.7
Seed ortholog evalue1.7e-50
Seed eggNOG ortholog2880.D7G5B9
KEGG rclassRC00060,RC00557
KEGG koko:K00314
KEGG ReactionR00611
KEGG Pathwayko00260,ko01100,map00260,map01100
EggNOG free text desc.oxidoreductase activity, acting on the CH-NH group of donors, flavin as acceptor
EggNOG OGsCOG0404@1,KOG2844@2759
EC1.5.8.3
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size510
Cds size510
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930092.8638687-CDS-H-elongata_contig191390:302..8121622930092.8638687-CDS-H-elongata_contig191390:302..812Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig191390 303..812 +
1691679277.4296184-CDS-H-elongata_contig191390:302..8121691679277.4296184-CDS-H-elongata_contig191390:302..812Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig191390 303..812 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig191390.5289.1prot_H-elongata_contig191390.5289.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig191390 303..812 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig191390.5289.1

>prot_H-elongata_contig191390.5289.1 ID=prot_H-elongata_contig191390.5289.1|Name=mRNA_H-elongata_contig191390.5289.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=170bp
MPSSLSSSLTAPRINSDGDYSFSRRKFPQSVMRNSMTDFRIEKDVVVIGG
GLAGLSTALELAKRGRQVTVLSRSRAEAAAEAAGGMIAPQAERLESGVYL
DLCLASRAMYPEWVSGIEAIAGRDGEVARAHLFSCGGFMSPAFDGDAVHV
WNPPAEAGHAQWFDREQVLL
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mRNA from alignment at H-elongata_contig191390:303..812+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig191390.5289.1 ID=mRNA_H-elongata_contig191390.5289.1|Name=mRNA_H-elongata_contig191390.5289.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=510bp|location=Sequence derived from alignment at H-elongata_contig191390:303..812+ (Himanthalia elongata Himel1 dioecious)
ATGCCCTCATCATTATCATCGTCATTGACAGCACCACGCATCAATAGCGA TGGCGACTATAGCTTTTCAAGGAGAAAATTTCCACAGTCTGTGATGCGGA ATTCGATGACTGACTTCCGCATCGAGAAAGACGTTGTAGTTATCGGCGGG GGCTTGGCGGGGCTGTCGACGGCTCTCGAGCTCGCCAAGCGAGGGAGGCA AGTAACGGTGCTTTCACGTAGTCGTGCCGAGGCGGCGGCGGAGGCAGCCG GGGGGATGATCGCTCCTCAAGCAGAGCGCCTGGAAAGCGGAGTGTACCTG GATCTTTGCTTGGCCAGTCGGGCCATGTACCCGGAGTGGGTATCAGGCAT TGAAGCGATCGCCGGCCGTGATGGAGAGGTGGCTCGAGCACACTTGTTCA GCTGTGGCGGATTCATGAGCCCGGCGTTCGACGGGGATGCAGTGCACGTC TGGAACCCGCCTGCCGAGGCAGGGCACGCTCAGTGGTTCGACCGGGAACA GGTGCTGCTA
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Coding sequence (CDS) from alignment at H-elongata_contig191390:303..812+

>mRNA_H-elongata_contig191390.5289.1 ID=mRNA_H-elongata_contig191390.5289.1|Name=mRNA_H-elongata_contig191390.5289.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1020bp|location=Sequence derived from alignment at H-elongata_contig191390:303..812+ (Himanthalia elongata Himel1 dioecious)
ATGCCCTCATCATTATCATCGTCATTGACAGCACCACGCATCAATAGCGA
TGGCGACTATAGCTTTTCAAGGAGAAAATTTCCACAGTCTGTGATGCGGA
ATTCGATGACTGACTTCCGCATCGAGAAAGACGTTGTAGTTATCGGCGGG
GGCTTGGCGGGGCTGTCGACGGCTCTCGAGCTCGCCAAGCGAGGGAGGCA
AGTAACGGTGCTTTCACGTAGTCGTGCCGAGGCGGCGGCGGAGGCAGCCG
GGGGGATGATCGCTCCTCAAGCAGAGCGCCTGGAAAGCGGAGTGTACCTG
GATCTTTGCTTGGCCAGTCGGGCCATGTACCCGGAGTGGGTATCAGGCAT
TGAAGCGATCGCCGGCCGTGATGGAGAGGTGGCTCGAGCACACTTGTTCA
GCTGTGGCGGATTCATGAGCCCGGCGTTCGACGGGGATGCAGTGCACGTC
TGGAACCCGCCTGCCGAGGCAGGGCACGCTCAGTGGTTCGACCGGGAACA
GGTGCTGCTAATGCCCTCATCATTATCATCGTCATTGACAGCACCACGCA
TCAATAGCGATGGCGACTATAGCTTTTCAAGGAGAAAATTTCCACAGTCT
GTGATGCGGAATTCGATGACTGACTTCCGCATCGAGAAAGACGTTGTAGT
TATCGGCGGGGGCTTGGCGGGGCTGTCGACGGCTCTCGAGCTCGCCAAGC
GAGGGAGGCAAGTAACGGTGCTTTCACGTAGTCGTGCCGAGGCGGCGGCG
GAGGCAGCCGGGGGGATGATCGCTCCTCAAGCAGAGCGCCTGGAAAGCGG
AGTGTACCTGGATCTTTGCTTGGCCAGTCGGGCCATGTACCCGGAGTGGG
TATCAGGCATTGAAGCGATCGCCGGCCGTGATGGAGAGGTGGCTCGAGCA
CACTTGTTCAGCTGTGGCGGATTCATGAGCCCGGCGTTCGACGGGGATGC
AGTGCACGTCTGGAACCCGCCTGCCGAGGCAGGGCACGCTCAGTGGTTCG
ACCGGGAACAGGTGCTGCTA
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