mRNA_H-elongata_contig191286.5285.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig191286.5285.1 vs. uniprot
Match: D7FXM7_ECTSI (Coatomer subunit epsilon n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXM7_ECTSI) HSP 1 Score: 125 bits (314), Expect = 1.440e-33 Identity = 61/78 (78.21%), Postives = 71/78 (91.03%), Query Frame = 1
Query: 1 QVKDNAPPPLQAVRLLAQYLSSPETSREIATETLKMWLSDPVSCNNPTVQLLAGAVFCHEGDLKESIKTIRNGVTMEQ 234
++KD+APP LQAVRL+AQYLS+PE SREI ETLKMWL+DP SCNNPTVQLLA AVF HEGDLKE++++IRNGVTMEQ
Sbjct: 60 EIKDDAPPALQAVRLMAQYLSNPE-SREIVIETLKMWLTDPGSCNNPTVQLLAAAVFTHEGDLKEAVRSIRNGVTMEQ 136
BLAST of mRNA_H-elongata_contig191286.5285.1 vs. uniprot
Match: A0A836CM75_9STRA (Coatomer subunit epsilon n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM75_9STRA) HSP 1 Score: 84.0 bits (206), Expect = 1.230e-17 Identity = 43/77 (55.84%), Postives = 56/77 (72.73%), Query Frame = 1
Query: 4 VKDNAPPPLQAVRLLAQYLSSPETSREIATETLKMWLSDPVSCNNPTVQLLAGAVFCHEGDLKESIKTIRNGVTMEQ 234
V D+AP LQA +LLA Y + PE +R++ TL WL DP S +NPT+QLLA ++C E +LKE+I+ IRNGVTMEQ
Sbjct: 62 VSDSAPTSLQACKLLATYEAQPE-NRDMVLLTLGEWLDDPSSGHNPTLQLLAADIYCREDNLKEAIRAIRNGVTMEQ 137
BLAST of mRNA_H-elongata_contig191286.5285.1 vs. uniprot
Match: A0A7S2XUN8_9STRA (Coatomer subunit epsilon n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUN8_9STRA) HSP 1 Score: 81.3 bits (199), Expect = 1.170e-16 Identity = 41/77 (53.25%), Postives = 56/77 (72.73%), Query Frame = 1
Query: 1 QVKDNAPPPLQAVRLLAQYLSSPETSREIATETLKMWLSDPVSCNNPTVQLLAGAVFCHEGDLKESIKTIRNGVTME 231
+V DN+ P LQAVRLLAQYLS P +SRE+ ETL WL+D ++PT+QL++ ++ HE DLK ++K + GVTME
Sbjct: 60 EVNDNSAPSLQAVRLLAQYLSDP-SSRELVLETLPQWLTDN---HSPTLQLISAQIYMHENDLKNALKAVGQGVTME 132
BLAST of mRNA_H-elongata_contig191286.5285.1 vs. uniprot
Match: A0A1Q3BCF6_CEPFO (Coatomer subunit epsilon n=2 Tax=fabids TaxID=91835 RepID=A0A1Q3BCF6_CEPFO) HSP 1 Score: 80.5 bits (197), Expect = 2.860e-16 Identity = 39/77 (50.65%), Postives = 56/77 (72.73%), Query Frame = 1
Query: 1 QVKDNAPPPLQAVRLLAQYLSSPETSREIATETLKMWLSDPVSCNNPTVQLLAGAVFCHEGDLKESIKTIRNGVTME 231
++ +A PLQAV+LLA YLSSP+ ++E+A +LK WL+DP NNPT++L+AG VF H+ D E++K +G TME
Sbjct: 60 EIDSSAATPLQAVKLLALYLSSPD-NKEMAISSLKEWLADPAIANNPTLRLIAGIVFMHQEDFNEALKHTNSGGTME 135
BLAST of mRNA_H-elongata_contig191286.5285.1 vs. uniprot
Match: Q9MAX8_SOYBN (Coatomer subunit epsilon n=24 Tax=50 kb inversion clade TaxID=2231393 RepID=Q9MAX8_SOYBN) HSP 1 Score: 79.3 bits (194), Expect = 6.030e-16 Identity = 40/77 (51.95%), Postives = 54/77 (70.13%), Query Frame = 1
Query: 1 QVKDNAPPPLQAVRLLAQYLSSPETSREIATETLKMWLSDPVSCNNPTVQLLAGAVFCHEGDLKESIKTIRNGVTME 231
++ D+AP PLQAV+LLA Y SSP+T ++ A +LK WL+DP NN T++L+AG VF HE D E++K G TME
Sbjct: 59 EIHDDAPTPLQAVKLLALYFSSPDT-KDSAIASLKEWLADPAIGNNATLRLVAGLVFLHENDFNEALKHTNAGGTME 134
BLAST of mRNA_H-elongata_contig191286.5285.1 vs. uniprot
Match: A0A445IW60_GLYSO (Coatomer subunit epsilon-1 isoform B n=1 Tax=Glycine soja TaxID=3848 RepID=A0A445IW60_GLYSO) HSP 1 Score: 79.3 bits (194), Expect = 6.240e-16 Identity = 39/77 (50.65%), Postives = 54/77 (70.13%), Query Frame = 1
Query: 1 QVKDNAPPPLQAVRLLAQYLSSPETSREIATETLKMWLSDPVSCNNPTVQLLAGAVFCHEGDLKESIKTIRNGVTME 231
++ D+AP PLQAV+LLA Y SSP+T ++ A +LK WL+DP NN T++L+AG VF HE D E++K G TM+
Sbjct: 59 EIHDDAPTPLQAVKLLALYFSSPDT-KDSAIASLKEWLADPAIANNATLRLVAGLVFLHENDFNEALKHTNAGGTMD 134
BLAST of mRNA_H-elongata_contig191286.5285.1 vs. uniprot
Match: A0A2I0L3F1_PUNGR (Coatomer subunit epsilon n=3 Tax=cellular organisms TaxID=131567 RepID=A0A2I0L3F1_PUNGR) HSP 1 Score: 77.8 bits (190), Expect = 2.400e-15 Identity = 38/77 (49.35%), Postives = 53/77 (68.83%), Query Frame = 1
Query: 1 QVKDNAPPPLQAVRLLAQYLSSPETSREIATETLKMWLSDPVSCNNPTVQLLAGAVFCHEGDLKESIKTIRNGVTME 231
++ D+AP PLQ V+LLA YLSSP+ ++E +LK WL+DP NNP ++L+AG +F HE D E++K G TME
Sbjct: 65 EIDDSAPTPLQGVKLLALYLSSPD-NKESVISSLKEWLADPAIGNNPILRLIAGTIFMHEQDYNEALKHTNAGGTME 140
BLAST of mRNA_H-elongata_contig191286.5285.1 vs. uniprot
Match: A0A1J7FUQ5_LUPAN (Coatomer subunit epsilon n=4 Tax=Lupinus TaxID=3869 RepID=A0A1J7FUQ5_LUPAN) HSP 1 Score: 77.4 bits (189), Expect = 2.930e-15 Identity = 40/73 (54.79%), Postives = 50/73 (68.49%), Query Frame = 1
Query: 13 NAPPPLQAVRLLAQYLSSPETSREIATETLKMWLSDPVSCNNPTVQLLAGAVFCHEGDLKESIKTIRNGVTME 231
NAP PLQAV+LLA YLSSP+ +E +LK WLSDP NN T++L+AG +F HE D E++K G TME
Sbjct: 63 NAPTPLQAVKLLALYLSSPD-DKESTISSLKEWLSDPAIGNNATLRLIAGIIFLHEQDFNEALKYTNAGGTME 134
BLAST of mRNA_H-elongata_contig191286.5285.1 vs. uniprot
Match: A0A444WP95_ARAHY (Uncharacterized protein n=2 Tax=Arachis hypogaea TaxID=3818 RepID=A0A444WP95_ARAHY) HSP 1 Score: 76.6 bits (187), Expect = 3.050e-15 Identity = 38/77 (49.35%), Postives = 51/77 (66.23%), Query Frame = 1
Query: 1 QVKDNAPPPLQAVRLLAQYLSSPETSREIATETLKMWLSDPVSCNNPTVQLLAGAVFCHEGDLKESIKTIRNGVTME 231
++ NAP PLQAV+LLA Y S + +E A +LK WL+DP NNPT++L+AG +F HE D E++K G TME
Sbjct: 59 EIDQNAPTPLQAVKLLALYFSG-ASQKESAISSLKEWLADPAIGNNPTLRLIAGTIFLHEQDFNEALKYTNAGGTME 134
BLAST of mRNA_H-elongata_contig191286.5285.1 vs. uniprot
Match: A0A7S2F9R0_9STRA (Coatomer subunit epsilon n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2F9R0_9STRA) HSP 1 Score: 77.4 bits (189), Expect = 3.410e-15 Identity = 39/80 (48.75%), Postives = 57/80 (71.25%), Query Frame = 1
Query: 1 QVKD--NAPPPLQAVRLLAQYLSSPETSREIATETLKMWLSDPVSCNNPTVQLLAGAVFCHEGDLKESIKTIRNGVTMEQ 234
++KD P LQAV+LLA+YLS P +S+E+ TL WL+DP S N ++QL+A ++ HE + K+++KTIR+G TMEQ
Sbjct: 60 EIKDAPGTPVSLQAVKLLARYLSDP-SSKELVLMTLGEWLADPGSAGNSSLQLIAAVIYMHENNTKDALKTIRHGTTMEQ 138 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig191286.5285.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig191286.5285.1 >prot_H-elongata_contig191286.5285.1 ID=prot_H-elongata_contig191286.5285.1|Name=mRNA_H-elongata_contig191286.5285.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=79bp QVKDNAPPPLQAVRLLAQYLSSPETSREIATETLKMWLSDPVSCNNPTVQback to top mRNA from alignment at H-elongata_contig191286:103..339- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig191286.5285.1 ID=mRNA_H-elongata_contig191286.5285.1|Name=mRNA_H-elongata_contig191286.5285.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=237bp|location=Sequence derived from alignment at H-elongata_contig191286:103..339- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig191286:103..339- >mRNA_H-elongata_contig191286.5285.1 ID=mRNA_H-elongata_contig191286.5285.1|Name=mRNA_H-elongata_contig191286.5285.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=474bp|location=Sequence derived from alignment at H-elongata_contig191286:103..339- (Himanthalia elongata Himel1 dioecious)back to top |