mRNA_H-elongata_contig190116.5241.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig190116.5241.1
Unique NamemRNA_H-elongata_contig190116.5241.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig190116.5241.1 vs. uniprot
Match: UPI001AA1AADC (hypothetical protein n=1 Tax=Vibrio parahaemolyticus TaxID=670 RepID=UPI001AA1AADC)

HSP 1 Score: 68.2 bits (165), Expect = 2.720e-12
Identity = 34/72 (47.22%), Postives = 45/72 (62.50%), Query Frame = 1
Query:    7 RALEITRCKSIETKLRTRRLLWAGTFIRMSDERLPKRLAFGNLEGAVRRGRGGKEKEWIDCVKSDIRGFGIT 222
            +AL++TRC+SIET +R RRL +AG   R S +RLP R+ FG + G      GG+ K W  CV  D+R F  T
Sbjct:   18 KALKMTRCESIETTIRKRRLFFAGGVARQSKDRLPSRVMFGTIAGGENPRPGGQVKTWHRCVVEDLREFRAT 89          
BLAST of mRNA_H-elongata_contig190116.5241.1 vs. uniprot
Match: UPI001AA1A1FE (hypothetical protein n=1 Tax=Vibrio parahaemolyticus TaxID=670 RepID=UPI001AA1A1FE)

HSP 1 Score: 65.9 bits (159), Expect = 1.660e-11
Identity = 33/72 (45.83%), Postives = 43/72 (59.72%), Query Frame = 1
Query:    7 RALEITRCKSIETKLRTRRLLWAGTFIRMSDERLPKRLAFGNLEGAVRRGRGGKEKEWIDCVKSDIRGFGIT 222
            +AL ITRC+SIET +R RRL +AG  +R  + RLP RL FG + G      GG+ K W   +  D+R F  T
Sbjct:   56 KALRITRCESIETTIRKRRLFFAGAVVRQHEGRLPSRLMFGTIAGGGSPKPGGQPKTWPRAIAEDLRVFKAT 127          
BLAST of mRNA_H-elongata_contig190116.5241.1 vs. uniprot
Match: A0A654HQL2_9CEST (Uncharacterized protein n=1 Tax=Sparganum proliferum TaxID=64606 RepID=A0A654HQL2_9CEST)

HSP 1 Score: 56.2 bits (134), Expect = 1.970e-7
Identity = 31/70 (44.29%), Postives = 44/70 (62.86%), Query Frame = 1
Query:   13 LEITRCKSIETKLRTRRLLWAGTFIRMSDERLPKRLAFGNLEGAVRRGRGGKEKEWIDCVKSDIRGFGIT 222
            LE TR  SI T LR  +L W+G  +RM DERLPKRL +G++    RR +GG+ + + D +KS ++   I 
Sbjct:  158 LERTRILSIYTMLRQMQLRWSGHLVRMDDERLPKRLFYGDVATGSRR-QGGQIRRYKDTLKSSLKRLQIN 226          
BLAST of mRNA_H-elongata_contig190116.5241.1 vs. uniprot
Match: A0A654GR01_9CEST (Reverse transcriptase domain-containing protein n=1 Tax=Sparganum proliferum TaxID=64606 RepID=A0A654GR01_9CEST)

HSP 1 Score: 55.8 bits (133), Expect = 2.760e-7
Identity = 31/70 (44.29%), Postives = 44/70 (62.86%), Query Frame = 1
Query:   13 LEITRCKSIETKLRTRRLLWAGTFIRMSDERLPKRLAFGNLEGAVRRGRGGKEKEWIDCVKSDIRGFGIT 222
            LE T   SI T LR  +L W+G  +RM DERLPKRL +G++E   RR +GG+ + + D +KS ++   I 
Sbjct:  314 LERTGILSIYTMLRQMQLRWSGHLVRMDDERLPKRLFYGDVETGSRR-QGGQIRRYKDTLKSSLKRLQIN 382          
BLAST of mRNA_H-elongata_contig190116.5241.1 vs. uniprot
Match: A0A654HL17_9CEST (Uncharacterized protein n=1 Tax=Sparganum proliferum TaxID=64606 RepID=A0A654HL17_9CEST)

HSP 1 Score: 55.8 bits (133), Expect = 2.780e-7
Identity = 31/70 (44.29%), Postives = 44/70 (62.86%), Query Frame = 1
Query:   13 LEITRCKSIETKLRTRRLLWAGTFIRMSDERLPKRLAFGNLEGAVRRGRGGKEKEWIDCVKSDIRGFGIT 222
            LE T   SI T LR  +L W+G  +RM DERLPKRL +G++E   RR +GG+ + + D +KS ++   I 
Sbjct:  318 LERTGILSIYTMLRQMQLRWSGHLVRMDDERLPKRLFYGDVETGSRR-QGGQIRRYKDTLKSSLKRLQIN 386          
BLAST of mRNA_H-elongata_contig190116.5241.1 vs. uniprot
Match: A0A654GVI8_9CEST (Uncharacterized protein n=1 Tax=Sparganum proliferum TaxID=64606 RepID=A0A654GVI8_9CEST)

HSP 1 Score: 55.5 bits (132), Expect = 3.480e-7
Identity = 31/70 (44.29%), Postives = 43/70 (61.43%), Query Frame = 1
Query:   13 LEITRCKSIETKLRTRRLLWAGTFIRMSDERLPKRLAFGNLEGAVRRGRGGKEKEWIDCVKSDIRGFGIT 222
            LE T   SI T LR  +L W+G  +RM DERLPKRL +G++    RR +GG+ + + D +KS +R   I 
Sbjct:   53 LERTEILSIYTMLRQMQLRWSGHLVRMDDERLPKRLFYGDVATGSRR-QGGQIRRYKDTLKSSLRRLQIN 121          
BLAST of mRNA_H-elongata_contig190116.5241.1 vs. uniprot
Match: A0A654GJ91_9CEST (Uncharacterized protein n=1 Tax=Sparganum proliferum TaxID=64606 RepID=A0A654GJ91_9CEST)

HSP 1 Score: 55.1 bits (131), Expect = 5.170e-7
Identity = 31/70 (44.29%), Postives = 43/70 (61.43%), Query Frame = 1
Query:   13 LEITRCKSIETKLRTRRLLWAGTFIRMSDERLPKRLAFGNLEGAVRRGRGGKEKEWIDCVKSDIRGFGIT 222
            LE T   SI T LR  +L W+G  +RM DERLPKRL +G++    RR RGG+ + + D +KS ++   I 
Sbjct:  132 LERTGILSIYTMLRQMQLRWSGHLVRMDDERLPKRLFYGDVATGSRR-RGGQIRRYKDTLKSSLKRLQIN 200          
BLAST of mRNA_H-elongata_contig190116.5241.1 vs. uniprot
Match: A0A654H8Y2_9CEST (Uncharacterized protein n=1 Tax=Sparganum proliferum TaxID=64606 RepID=A0A654H8Y2_9CEST)

HSP 1 Score: 55.1 bits (131), Expect = 5.300e-7
Identity = 31/70 (44.29%), Postives = 43/70 (61.43%), Query Frame = 1
Query:   13 LEITRCKSIETKLRTRRLLWAGTFIRMSDERLPKRLAFGNLEGAVRRGRGGKEKEWIDCVKSDIRGFGIT 222
            LE T   SI T LR  +L W+G  +RM DERLPKRL +G++    RR +GG+ + + D +KS +R   I 
Sbjct: 1075 LERTGILSIYTMLRQMQLRWSGQLVRMDDERLPKRLFYGDVATGSRR-QGGQIRRYKDTLKSSLRRLQIN 1143          
BLAST of mRNA_H-elongata_contig190116.5241.1 vs. uniprot
Match: A0A7M3QXL9_SPIER (Hypothetical protein n=1 Tax=Spirometra erinaceieuropaei TaxID=99802 RepID=A0A7M3QXL9_SPIER)

HSP 1 Score: 54.7 bits (130), Expect = 6.910e-7
Identity = 29/65 (44.62%), Postives = 43/65 (66.15%), Query Frame = 1
Query:   13 LEITRCKSIETKLRTRRLLWAGTFIRMSDERLPKRLAFGNLEGAVRRGRGGKEKEWIDCVKSDIR 207
            LE TR  SI + LR  +L W+G  +RM DERLPKRL++G++    RR +GG  + + D +KS ++
Sbjct:   53 LERTRMLSIYSMLRQMQLRWSGHLVRMDDERLPKRLSYGDVATGSRR-QGGPIRRYKDTLKSSLK 116          
BLAST of mRNA_H-elongata_contig190116.5241.1 vs. uniprot
Match: A0A654GS99_9CEST (Uncharacterized protein n=1 Tax=Sparganum proliferum TaxID=64606 RepID=A0A654GS99_9CEST)

HSP 1 Score: 54.7 bits (130), Expect = 6.930e-7
Identity = 30/70 (42.86%), Postives = 43/70 (61.43%), Query Frame = 1
Query:   13 LEITRCKSIETKLRTRRLLWAGTFIRMSDERLPKRLAFGNLEGAVRRGRGGKEKEWIDCVKSDIRGFGIT 222
            LE T   SI T LR  +L W+G  +RM DERLPKRL +G++    RR +GG+ + + D +KS ++   I 
Sbjct:   53 LERTEIPSIYTMLRQMQLRWSGHLVRMDDERLPKRLFYGDVATGSRR-QGGQIRRYKDTLKSSLKRLQIN 121          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig190116.5241.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001AA1AADC2.720e-1247.22hypothetical protein n=1 Tax=Vibrio parahaemolytic... [more]
UPI001AA1A1FE1.660e-1145.83hypothetical protein n=1 Tax=Vibrio parahaemolytic... [more]
A0A654HQL2_9CEST1.970e-744.29Uncharacterized protein n=1 Tax=Sparganum prolifer... [more]
A0A654GR01_9CEST2.760e-744.29Reverse transcriptase domain-containing protein n=... [more]
A0A654HL17_9CEST2.780e-744.29Uncharacterized protein n=1 Tax=Sparganum prolifer... [more]
A0A654GVI8_9CEST3.480e-744.29Uncharacterized protein n=1 Tax=Sparganum prolifer... [more]
A0A654GJ91_9CEST5.170e-744.29Uncharacterized protein n=1 Tax=Sparganum prolifer... [more]
A0A654H8Y2_9CEST5.300e-744.29Uncharacterized protein n=1 Tax=Sparganum prolifer... [more]
A0A7M3QXL9_SPIER6.910e-744.62Hypothetical protein n=1 Tax=Spirometra erinaceieu... [more]
A0A654GS99_9CEST6.930e-742.86Uncharacterized protein n=1 Tax=Sparganum prolifer... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig190116contigH-elongata_contig190116:81..308 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size228
Cds size228
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930087.2057753-CDS-H-elongata_contig190116:80..3081622930087.2057753-CDS-H-elongata_contig190116:80..308Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig190116 81..308 -
1691679275.541591-CDS-H-elongata_contig190116:80..3081691679275.541591-CDS-H-elongata_contig190116:80..308Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig190116 81..308 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig190116.5241.1prot_H-elongata_contig190116.5241.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig190116 81..308 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig190116.5241.1

>prot_H-elongata_contig190116.5241.1 ID=prot_H-elongata_contig190116.5241.1|Name=mRNA_H-elongata_contig190116.5241.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=76bp
NNRALEITRCKSIETKLRTRRLLWAGTFIRMSDERLPKRLAFGNLEGAVR
RGRGGKEKEWIDCVKSDIRGFGITGD
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mRNA from alignment at H-elongata_contig190116:81..308-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig190116.5241.1 ID=mRNA_H-elongata_contig190116.5241.1|Name=mRNA_H-elongata_contig190116.5241.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=228bp|location=Sequence derived from alignment at H-elongata_contig190116:81..308- (Himanthalia elongata Himel1 dioecious)
AACAACCGTGCCCTTGAGATAACCCGGTGCAAGAGCATTGAGACAAAGTT GCGCACGAGAAGACTTTTGTGGGCGGGAACGTTCATCCGAATGAGCGACG AGCGGTTGCCAAAGCGACTCGCCTTCGGAAACCTTGAGGGTGCAGTACGG AGAGGACGGGGTGGGAAGGAGAAAGAGTGGATCGACTGTGTAAAGAGTGA TATCCGGGGGTTTGGCATTACGGGGGAC
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Coding sequence (CDS) from alignment at H-elongata_contig190116:81..308-

>mRNA_H-elongata_contig190116.5241.1 ID=mRNA_H-elongata_contig190116.5241.1|Name=mRNA_H-elongata_contig190116.5241.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=456bp|location=Sequence derived from alignment at H-elongata_contig190116:81..308- (Himanthalia elongata Himel1 dioecious)
AACAACCGTGCCCTTGAGATAACCCGGTGCAAGAGCATTGAGACAAAGTT
GCGCACGAGAAGACTTTTGTGGGCGGGAACGTTCATCCGAATGAGCGACG
AGCGGTTGCCAAAGCGACTCGCCTTCGGAAACCTTGAGGGTGCAGTACGG
AGAGGACGGGGTGGGAAGGAGAAAGAGTGGATCGACTGTGTAAAGAGTGA
TATCCGGGGGTTTGGCATTACGGGGGACAACAACCGTGCCCTTGAGATAA
CCCGGTGCAAGAGCATTGAGACAAAGTTGCGCACGAGAAGACTTTTGTGG
GCGGGAACGTTCATCCGAATGAGCGACGAGCGGTTGCCAAAGCGACTCGC
CTTCGGAAACCTTGAGGGTGCAGTACGGAGAGGACGGGGTGGGAAGGAGA
AAGAGTGGATCGACTGTGTAAAGAGTGATATCCGGGGGTTTGGCATTACG
GGGGAC
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