mRNA_H-elongata_contig189457.5205.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig189457.5205.1
Unique NamemRNA_H-elongata_contig189457.5205.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig189457.5205.1 vs. uniprot
Match: UPI0010A55CE9 (uncharacterized protein LOC114752370 n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A55CE9)

HSP 1 Score: 58.9 bits (141), Expect = 1.720e-7
Identity = 31/83 (37.35%), Postives = 49/83 (59.04%), Query Frame = 1 
Query:   67 AKSLTGAEWWNTLGKASLPEMAQVAGRVLSMVPAAAGCERNWSLMGSVSEGKHARMSSNTMSNLVYVRTNLQLMYRENMKSKK 315
            A+ L   +WW+  G  S+PE+ QVA R+LS   +++GCERNWSL   +   +  R+    +++LV+   NL+L  R  +  KK
Sbjct:  607 AQKLDPHQWWSFYGS-SIPELQQVAIRILSQTSSSSGCERNWSLFERIHNKRRNRLEHERLNDLVFTNYNLRLKDRNLLNKKK 688
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BLAST of mRNA_H-elongata_contig189457.5205.1 vs. uniprot
Match: UPI0010A37B05 (uncharacterized protein LOC114731662 n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A37B05)

HSP 1 Score: 58.9 bits (141), Expect = 1.730e-7
Identity = 31/83 (37.35%), Postives = 49/83 (59.04%), Query Frame = 1 
Query:   67 AKSLTGAEWWNTLGKASLPEMAQVAGRVLSMVPAAAGCERNWSLMGSVSEGKHARMSSNTMSNLVYVRTNLQLMYRENMKSKK 315
            A+ L   +WW+  G  S+PE+ QVA R+LS    ++GCERNWSL   +   +  R+    +++LV+   NL+L  R+ +  KK
Sbjct:  666 AQKLDPHQWWSFYGS-SIPELQQVAIRILSQTSTSSGCERNWSLFERIHTKRRNRLEHERLNDLVFTNYNLRLKDRDILNKKK 747
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BLAST of mRNA_H-elongata_contig189457.5205.1 vs. uniprot
Match: UPI0010A49E47 (uncharacterized protein LOC114750523 n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A49E47)

HSP 1 Score: 57.8 bits (138), Expect = 3.810e-7
Identity = 29/76 (38.16%), Postives = 46/76 (60.53%), Query Frame = 1 
Query:   88 EWWNTLGKASLPEMAQVAGRVLSMVPAAAGCERNWSLMGSVSEGKHARMSSNTMSNLVYVRTNLQLMYRENMKSKK 315
            +WW+  G  S+PE+ QVA R+LS    ++GCERNWSL   +   +  R+    +++LV+   NL+L  R+ +  KK
Sbjct:  190 QWWSFYGS-SIPELQQVAIRILSQTSTSSGCERNWSLFERIHTKRRNRLEHERLNDLVFTNYNLRLKDRDILNKKK 264
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BLAST of mRNA_H-elongata_contig189457.5205.1 vs. uniprot
Match: UPI001652E070 (uncharacterized protein LOC110926009 n=1 Tax=Helianthus annuus TaxID=4232 RepID=UPI001652E070)

HSP 1 Score: 53.5 bits (127), Expect = 1.140e-5
Identity = 27/70 (38.57%), Postives = 41/70 (58.57%), Query Frame = 1 
Query:   85 AEWWNTLGKASLPEMAQVAGRVLSMVPAAAGCERNWSLMGSVSEGKHARMSSNTMSNLVYVRTNLQLMYR 294
            A+WWN  GK  +P + Q+A +VLS+  +++GCERNWS    +   K  R+    + +LV+V  N  L  R
Sbjct:  267 AQWWNLYGK-EVPNIQQLAMKVLSLTCSSSGCERNWSTFEQIHSKKRNRLEHKKLQDLVFVNYNKTLKNR 335
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BLAST of mRNA_H-elongata_contig189457.5205.1 vs. uniprot
Match: UPI0009C04824 (uncharacterized protein LOC110006618 n=1 Tax=Amborella trichopoda TaxID=13333 RepID=UPI0009C04824)

HSP 1 Score: 52.4 bits (124), Expect = 1.350e-5
Identity = 27/76 (35.53%), Postives = 43/76 (56.58%), Query Frame = 1 
Query:   58 LEQAKSLTGAEWWNTLGKASLPEMAQVAGRVLSMVPAAAGCERNWSLMGSVSEGKHARMSSNTMSNLVYVRTNLQL 285
            L Q      A+WW   G  S P + ++A R+LS++ A++GCERNWS    V   +  R+     ++L++VR N +L
Sbjct:  111 LRQRNEEESAQWWRQHGS-SAPNLQKMAMRILSLITASSGCERNWSSFEMVHTKRRNRLEQRKPNDLIFVRENQRL 185
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BLAST of mRNA_H-elongata_contig189457.5205.1 vs. uniprot
Match: UPI00165300D7 (uncharacterized protein LOC110876300 n=1 Tax=Helianthus annuus TaxID=4232 RepID=UPI00165300D7)

HSP 1 Score: 51.6 bits (122), Expect = 5.780e-5
Identity = 26/70 (37.14%), Postives = 41/70 (58.57%), Query Frame = 1 
Query:   85 AEWWNTLGKASLPEMAQVAGRVLSMVPAAAGCERNWSLMGSVSEGKHARMSSNTMSNLVYVRTNLQLMYR 294
            A+WW+  GK  +P + Q+A +VLS+   ++GCERNWS    +   K  R+    + +LV+V+ N  L  R
Sbjct:  349 AQWWSLYGK-EVPNIQQLAMKVLSLTCCSSGCERNWSTFEQIHSKKRNRLEYKKLQDLVFVKYNKTLKNR 417
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig189457.5205.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
UPI0010A55CE91.720e-737.35uncharacterized protein LOC114752370 n=1 Tax=Proso... [more]
UPI0010A37B051.730e-737.35uncharacterized protein LOC114731662 n=1 Tax=Proso... [more]
UPI0010A49E473.810e-738.16uncharacterized protein LOC114750523 n=1 Tax=Proso... [more]
UPI001652E0701.140e-538.57uncharacterized protein LOC110926009 n=1 Tax=Helia... [more]
UPI0009C048241.350e-535.53uncharacterized protein LOC110006618 n=1 Tax=Ambor... [more]
UPI00165300D75.780e-537.14uncharacterized protein LOC110876300 n=1 Tax=Helia... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig189457contigH-elongata_contig189457:322..720 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score64.3
Seed ortholog evalue4.8e-08
Seed eggNOG ortholog90675.XP_010495903.1
EggNOG free text desc.source UniProtKB
EggNOG OGs2C7QK@1,2QUNQ@2759,37QB2@33090,3GCE5@35493
COG Functional cat.S
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size399
Cds size393
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930082.3746514-UTR-H-elongata_contig189457:321..3271622930082.3746514-UTR-H-elongata_contig189457:321..327Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig189457 322..327 +
1691679273.9324837-UTR-H-elongata_contig189457:321..3271691679273.9324837-UTR-H-elongata_contig189457:321..327Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig189457 322..327 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930082.3904784-CDS-H-elongata_contig189457:327..7201622930082.3904784-CDS-H-elongata_contig189457:327..720Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig189457 328..720 +
1691679273.9432535-CDS-H-elongata_contig189457:327..7201691679273.9432535-CDS-H-elongata_contig189457:327..720Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig189457 328..720 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig189457.5205.1prot_H-elongata_contig189457.5205.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig189457 328..720 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig189457.5205.1

>prot_H-elongata_contig189457.5205.1 ID=prot_H-elongata_contig189457.5205.1|Name=mRNA_H-elongata_contig189457.5205.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=131bp
MIQYARYKSGNFPGAKFLEQAKSLTGAEWWNTLGKASLPEMAQVAGRVLS
MVPAAAGCERNWSLMGSVSEGKHARMSSNTMSNLVYVRTNLQLMYRENMK
SKKQHEEAGVVWEVDEDLERDGEPPSDTDDE
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mRNA from alignment at H-elongata_contig189457:322..720+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig189457.5205.1 ID=mRNA_H-elongata_contig189457.5205.1|Name=mRNA_H-elongata_contig189457.5205.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=399bp|location=Sequence derived from alignment at H-elongata_contig189457:322..720+ (Himanthalia elongata Himel1 dioecious)
AAAGTCATGATTCAGTACGCGAGGTACAAGTCGGGTAATTTCCCGGGTGC
CAAATTCCTCGAGCAAGCCAAGTCTCTGACGGGGGCGGAGTGGTGGAACA
CCCTCGGCAAGGCGAGTTTGCCGGAGATGGCGCAAGTAGCGGGCCGCGTT
CTATCTATGGTGCCAGCTGCGGCCGGGTGTGAACGTAACTGGAGCCTGAT
GGGGTCGGTCTCGGAGGGGAAGCATGCGCGCATGAGCTCAAACACCATGT
CCAACCTGGTCTACGTGCGTACCAACCTCCAGCTGATGTACCGCGAAAAC
ATGAAGAGTAAGAAGCAGCACGAAGAGGCGGGAGTCGTGTGGGAGGTCGA
CGAGGATCTGGAGAGAGATGGCGAGCCCCCAAGTGACACGGATGATGAA
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Coding sequence (CDS) from alignment at H-elongata_contig189457:322..720+

>mRNA_H-elongata_contig189457.5205.1 ID=mRNA_H-elongata_contig189457.5205.1|Name=mRNA_H-elongata_contig189457.5205.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=786bp|location=Sequence derived from alignment at H-elongata_contig189457:322..720+ (Himanthalia elongata Himel1 dioecious)
ATGATTCAGTACGCGAGGTACAAGTCGGGTAATTTCCCGGGTGCCAAATT
CCTCGAGCAAGCCAAGTCTCTGACGGGGGCGGAGTGGTGGAACACCCTCG
GCAAGGCGAGTTTGCCGGAGATGGCGCAAGTAGCGGGCCGCGTTCTATCT
ATGGTGCCAGCTGCGGCCGGGTGTGAACGTAACTGGAGCCTGATGGGGTC
GGTCTCGGAGGGGAAGCATGCGCGCATGAGCTCAAACACCATGTCCAACC
TGGTCTACGTGCGTACCAACCTCCAGCTGATGTACCGCGAAAACATGAAG
AGTAAGAAGCAGCACGAAGAGGCGGGAGTCGTGTGGGAGGTCGACGAGGA
TCTGGAGAGAGATGGCGAGCCCCCAAGTGACACGGATGATGAAATGATTC
AGTACGCGAGGTACAAGTCGGGTAATTTCCCGGGTGCCAAATTCCTCGAG
CAAGCCAAGTCTCTGACGGGGGCGGAGTGGTGGAACACCCTCGGCAAGGC
GAGTTTGCCGGAGATGGCGCAAGTAGCGGGCCGCGTTCTATCTATGGTGC
CAGCTGCGGCCGGGTGTGAACGTAACTGGAGCCTGATGGGGTCGGTCTCG
GAGGGGAAGCATGCGCGCATGAGCTCAAACACCATGTCCAACCTGGTCTA
CGTGCGTACCAACCTCCAGCTGATGTACCGCGAAAACATGAAGAGTAAGA
AGCAGCACGAAGAGGCGGGAGTCGTGTGGGAGGTCGACGAGGATCTGGAG
AGAGATGGCGAGCCCCCAAGTGACACGGATGATGAA
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