mRNA_H-elongata_contig189277.5197.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig189277.5197.1
Unique NamemRNA_H-elongata_contig189277.5197.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig189277.5197.1 vs. uniprot
Match: D8LNX9_ECTSI (MFS_1_like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNX9_ECTSI)

HSP 1 Score: 285 bits (728), Expect = 6.480e-88
Identity = 144/171 (84.21%), Postives = 157/171 (91.81%), Query Frame = 1
Query:    1 LDGRQIGHLGAITPAMTFIFTPLWGALTDRSGMLKQILVATFVASTLLRVSLAARTSFAWIVSVISLTAIMNAPVRPLLDSSALQALDDRGEYGKQRLWGQWGFGIGSFLTGRLLSSYGFKAAFYMHAAFSLPTLLILLHFNPNKEKRPKGPPPKFGELYRLVVHDPDVTV 513
            +  R+IGHLGAITPAMTF+FTPLWGALTD+SGMLKQILV TF ASTLLRVSLAARTSF WIVSVI+LTA++NAPVRPLLDSSALQ+LDDR EYGKQRLWGQWGFGIGSFLTG+LLS +GFKAAFYMHAAFSLPTLLIL+ F+P KE R K PP KFGELY+LVVHDPDV V
Sbjct:  510 IPDRRIGHLGAITPAMTFLFTPLWGALTDKSGMLKQILVLTFAASTLLRVSLAARTSFLWIVSVITLTAVINAPVRPLLDSSALQSLDDRAEYGKQRLWGQWGFGIGSFLTGKLLSRFGFKAAFYMHAAFSLPTLLILMRFSPKKEDRGKEPP-KFGELYQLVVHDPDVLV 679          
BLAST of mRNA_H-elongata_contig189277.5197.1 vs. uniprot
Match: A0A836CD83_9STRA (Major facilitator superfamily domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD83_9STRA)

HSP 1 Score: 176 bits (446), Expect = 4.620e-49
Identity = 93/168 (55.36%), Postives = 123/168 (73.21%), Query Frame = 1
Query:   10 RQIGHLGAITPAMTFIFTPLWGALTDRSGMLKQILVATFVASTLLRVSLAARTSFAWIVSVISLTAIMNAPVRPLLDSSALQALDDRGEYGKQRLWGQWGFGIGSFLTGRLLSSYG--FKAAFYMHAAFSLPTLLILLHFNPNKEKRPKGPPPKFGELYRLVVHDPDV 507
            R+IGHLGAITPA+TF  +PLWGALTD +G LK++L+ TF AS + RV    R ++ ++VS+I+LTA +NAPV+ LLDSS L  LDD+ EYGKQRLWGQ GFG+GS+L G +++ +G  +KAAF +HAA S PTLLILL F P    R    PP+F E  R++  + D+
Sbjct:  236 RRIGHLGAITPAVTFFVSPLWGALTDSTGRLKEVLLFTFAASVVFRVLTITRETYPFLVSIIALTAAVNAPVKTLLDSSVLNLLDDKREYGKQRLWGQCGFGLGSYLIGVVMARHGLTYKAAFKIHAAISAPTLLILLRFRPKAMPRE---PPRFREGLRVIAGNRDM 400          
BLAST of mRNA_H-elongata_contig189277.5197.1 vs. uniprot
Match: K8YPX5_NANGC (MFS domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YPX5_NANGC)

HSP 1 Score: 164 bits (416), Expect = 3.420e-45
Identity = 84/157 (53.50%), Postives = 109/157 (69.43%), Query Frame = 1
Query:    1 LDGRQIGHLGAITPAMTFIFTPLWGALTDRSGMLKQILVATFVASTLLRVSLAARTSFAWIVSVISLTAIMNAPVRPLLDSSALQALDDRGEYGKQRLWGQWGFGIGSFLTGRLLSSY---GFKAAFYMHAAFSLPTLLILLHFNPNKEKRPKGPPP 462
            L  +QIG LGAITPA+TF+  PLWGAL D++G  K +L+ TFVAS + R+    RT+F W+  ++  TA++NAPVRPLLDSS L  L+D+ EYGKQRLWGQ+GFG+   + G  L ++   G+KAAFY+HA  SLPTLLI+  FNP         PP
Sbjct:  127 LPDKQIGMLGAITPAVTFVVAPLWGALADQTGRHKDVLLFTFVASVVSRLLFIWRTTFGWLAILVFCTAVLNAPVRPLLDSSVLNLLEDKREYGKQRLWGQFGFGLAGCIVGPCLMNHKFGGYKAAFYVHALISLPTLLIMRRFNPTPPAPAPSSPP 283          
BLAST of mRNA_H-elongata_contig189277.5197.1 vs. uniprot
Match: A0A7S2A7J9_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A7J9_TRICV)

HSP 1 Score: 96.3 bits (238), Expect = 2.840e-21
Identity = 52/119 (43.70%), Postives = 75/119 (63.03%), Query Frame = 1
Query:    7 GRQIGHLGAITPAMTFIFTPLWGALTDRSGMLKQILVATFVASTLLRVSLAARTSFAWIVSVISLTAIMNAPVRPLLDSSALQAL--DDRGEYGKQRLWGQWGFGIGSFLTGRLLSSYG 357
            G  IG LGA+ P  TF+  P WG ++DR G    +L  TF+ S LL++S++ ++   +++  + LTA+ NAPV+ LLDS  +  L  ++RG YG+ RLWGQ GFG+GS   G  LS  G
Sbjct:   83 GGAIGLLGAVKPLTTFLVAPAWGIMSDRLGSHNFVLQFTFLVSLLLQLSVSLKSDVRYLMVTVFLTALFNAPVKSLLDSMVMDKLSVEERGSYGRLRLWGQLGFGLGSSGVGLYLSRAG 201          
BLAST of mRNA_H-elongata_contig189277.5197.1 vs. uniprot
Match: A0A1Z5KMM0_FISSO (MFS domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KMM0_FISSO)

HSP 1 Score: 98.2 bits (243), Expect = 7.050e-21
Identity = 54/114 (47.37%), Postives = 75/114 (65.79%), Query Frame = 1
Query:    7 GRQIGHLGAITPAMTFIFTPLWGALTDRSGMLKQILVATFVASTLLRVSLAARTSFAWIVSVISLTAIMNAPVRPLLDSSALQALDDRGEYGKQRLWGQWGFGIGSFLTGRLLS 348
            G+ IG LGA+ PA TFI  P+WG L D+      IL  TF+ S + ++ LA R    +I++++ +TA+ NAPV+ LLDS  L  + D+ +YG+ RLWGQ GFG+GS L G LLS
Sbjct:   15 GQIIGLLGAVKPATTFILAPVWGLLADQLQNPFLILQLTFLVSLVGQLLLACRDDAKFIMAMVFVTALFNAPVKSLLDSMVLDHIPDKTQYGRLRLWGQMGFGLGSSLVGVLLS 128          
BLAST of mRNA_H-elongata_contig189277.5197.1 vs. uniprot
Match: A0A1Z5KL90_FISSO (MFS domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KL90_FISSO)

HSP 1 Score: 97.8 bits (242), Expect = 1.700e-20
Identity = 54/114 (47.37%), Postives = 75/114 (65.79%), Query Frame = 1
Query:    7 GRQIGHLGAITPAMTFIFTPLWGALTDRSGMLKQILVATFVASTLLRVSLAARTSFAWIVSVISLTAIMNAPVRPLLDSSALQALDDRGEYGKQRLWGQWGFGIGSFLTGRLLS 348
            G+ IG LGA+ PA TFI  P+WG L D+      IL  TF+ S + ++ LA R    +I++++ +TA+ NAPV+ LLDS  L  + D+ +YG+ RLWGQ GFG+GS L G LLS
Sbjct:  810 GQIIGLLGAVKPATTFIVAPVWGLLADQLQNPFLILQLTFLVSLVGQLLLACRDDAKFIMAMVFVTALFNAPVKSLLDSMVLDHIPDKTQYGRLRLWGQMGFGLGSSLVGVLLS 923          
BLAST of mRNA_H-elongata_contig189277.5197.1 vs. uniprot
Match: A0A3A0C0S2_9CHLR (MFS domain-containing protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3A0C0S2_9CHLR)

HSP 1 Score: 94.7 bits (234), Expect = 8.360e-20
Identity = 50/140 (35.71%), Postives = 81/140 (57.86%), Query Frame = 1
Query:    1 LDGRQIGHLGAITPAMTFIFTPLWGALTDRSGMLKQILVATFVASTLLRVSLAARTSFAWIVSVISLTAIMNAPVRPLLDSSALQALDDRG-EYGKQRLWGQWGFGIGSFLTGRLLSSYGFKAAFYMHAAFSLPTLLILL 417
            L G QIG L  + P +T++  PLWGAL D +   +Q++V   V +    + LA   S  W++ ++ + A+ NAP+ PL+D+S +  L +R  +YGKQRLWG  G+G+   + G L+   G  A+F+  A +    L++ L
Sbjct:   47 LSGGQIGLLAGLPPFLTWLAAPLWGALADATQRHRQLMVVANVGTIAAVLGLAQAQSLLWLLPLVMVYAVFNAPLMPLVDNSVMALLGERSADYGKQRLWGAVGWGVAGGIAGLLVDRLGISASFFAFALWMTVGLVVAL 186          
BLAST of mRNA_H-elongata_contig189277.5197.1 vs. uniprot
Match: B8BR57_THAPS (MFS domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BR57_THAPS)

HSP 1 Score: 95.1 bits (235), Expect = 1.010e-19
Identity = 49/119 (41.18%), Postives = 78/119 (65.55%), Query Frame = 1
Query:    7 GRQIGHLGAITPAMTFIFTPLWGALTDRSGMLKQILVATFVASTLLRVSLAARTSFAWIVSVISLTAIMNAPVRPLLDS---SALQALDDRGEYGKQRLWGQWGFGIGSFLTGRLLSSY 354
            G  IG LGA+ P  TF+  PLWG ++D SG     L  TFV+S +L++ +   ++  ++++ +  TA++NAPV+ L+D+   S L + +D+ ++G+ RLWGQ GFG+GS L G LLS +
Sbjct:  132 GSSIGLLGAVKPLTTFLVAPLWGVISDWSGDHVSTLQFTFVSSLILQLLVGTNSNLQFLIATVFATALLNAPVKSLIDTIVMSKLTSEEDKYQFGRMRLWGQLGFGVGSSLVGYLLSMF 250          
BLAST of mRNA_H-elongata_contig189277.5197.1 vs. uniprot
Match: A0A1E7F2F5_9STRA (MFS general substrate transporter (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F2F5_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 1.220e-19
Identity = 49/114 (42.98%), Postives = 76/114 (66.67%), Query Frame = 1
Query:    7 GRQIGHLGAITPAMTFIFTPLWGALTDRSGMLKQILVATFVASTLLRVSLAARTSFAWIVSVISLTAIMNAPVRPLLDSSALQALDDRGEYGKQRLWGQWGFGIGSFLTGRLLS 348
            G+ IG LGAI P  TF+  PLWG ++D+SG   ++L  TF+ S + ++ ++ R   +WI+ ++ +TA+ NAPV+ LLDS  +  + +   YG+ RLWGQ GFG+GS + G +LS
Sbjct:   35 GQIIGMLGAIKPFTTFLVAPLWGVISDQSGSPFRVLYFTFLISLVGQLLVSWRHDPSWIMYMVFITALFNAPVKSLLDSMVMANIKNSKLYGRLRLWGQLGFGVGSSVVGIILS 148          
BLAST of mRNA_H-elongata_contig189277.5197.1 vs. uniprot
Match: A0A7S3VB90_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VB90_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 3.360e-19
Identity = 51/116 (43.97%), Postives = 75/116 (64.66%), Query Frame = 1
Query:    4 DGRQIGHLGAITPAMTFIFTPLWGALTDRSGMLKQILVATFVASTLLRVSLAARTSFAWIVSVISLTAIMNAPVRPLLDSSALQALDD--RGEYGKQRLWGQWGFGIGSFLTGRLL 345
             G+ IG LGA+ P  TF   PLWG ++D +     IL  TF+ S  L++ L  + +  ++V+++ LTA+ NAPV+ L+DS  +  LD+  RG+YGK RL+GQ GFGIGS + G L+
Sbjct:  185 SGQSIGLLGAVKPLTTFFVAPLWGIISDYTENPSLILQLTFIMSMGLQLLLPLKDNVNYLVTMVFLTALFNAPVKSLIDSMVMDKLDENSRGQYGKLRLYGQLGFGIGSSIVGTLI 300          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig189277.5197.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNX9_ECTSI6.480e-8884.21MFS_1_like domain-containing protein n=2 Tax=Ectoc... [more]
A0A836CD83_9STRA4.620e-4955.36Major facilitator superfamily domain-containing pr... [more]
K8YPX5_NANGC3.420e-4553.50MFS domain-containing protein n=3 Tax=Monodopsidac... [more]
A0A7S2A7J9_TRICV2.840e-2143.70Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A1Z5KMM0_FISSO7.050e-2147.37MFS domain-containing protein n=1 Tax=Fistulifera ... [more]
A0A1Z5KL90_FISSO1.700e-2047.37MFS domain-containing protein n=1 Tax=Fistulifera ... [more]
A0A3A0C0S2_9CHLR8.360e-2035.71MFS domain-containing protein n=1 Tax=Chloroflexi ... [more]
B8BR57_THAPS1.010e-1941.18MFS domain-containing protein n=1 Tax=Thalassiosir... [more]
A0A1E7F2F5_9STRA1.220e-1942.98MFS general substrate transporter (Fragment) n=1 T... [more]
A0A7S3VB90_9STRA3.360e-1943.97Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig189277contigH-elongata_contig189277:265..1163 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score285.8
Seed ortholog evalue1.3e-74
Seed eggNOG ortholog2880.D8LNX9
KEGG koko:K11367
EggNOG free text desc.MFS_1 like family
EggNOG OGsKOG3762@1,KOG3762@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03021,ko03036
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionMajor facilitator superfamily
Ec32 orthologEc-08_005410.1
Exons2
Model size513
Cds size513
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930081.6913257-CDS-H-elongata_contig189277:264..5791622930081.6913257-CDS-H-elongata_contig189277:264..579Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig189277 265..579 +
1691679273.7139351-CDS-H-elongata_contig189277:264..5791691679273.7139351-CDS-H-elongata_contig189277:264..579Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig189277 265..579 +
1622930081.7114801-CDS-H-elongata_contig189277:965..11631622930081.7114801-CDS-H-elongata_contig189277:965..1163Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig189277 966..1163 +
1691679273.7298355-CDS-H-elongata_contig189277:965..11631691679273.7298355-CDS-H-elongata_contig189277:965..1163Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig189277 966..1163 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig189277.5197.1prot_H-elongata_contig189277.5197.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig189277 265..1163 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig189277.5197.1

>prot_H-elongata_contig189277.5197.1 ID=prot_H-elongata_contig189277.5197.1|Name=mRNA_H-elongata_contig189277.5197.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=171bp
LDGRQIGHLGAITPAMTFIFTPLWGALTDRSGMLKQILVATFVASTLLRV
SLAARTSFAWIVSVISLTAIMNAPVRPLLDSSALQALDDRGEYGKQRLWG
QWGFGIGSFLTGRLLSSYGFKAAFYMHAAFSLPTLLILLHFNPNKEKRPK
GPPPKFGELYRLVVHDPDVTV
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mRNA from alignment at H-elongata_contig189277:265..1163+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig189277.5197.1 ID=mRNA_H-elongata_contig189277.5197.1|Name=mRNA_H-elongata_contig189277.5197.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=899bp|location=Sequence derived from alignment at H-elongata_contig189277:265..1163+ (Himanthalia elongata Himel1 dioecious)
TTGGACGGAAGACAAATAGGGCACCTTGGCGCCATCACCCCGGCGATGAC CTTTATATTCACGCCGCTGTGGGGGGCCCTGACGGACCGGTCGGGCATGC TCAAGCAGATCCTCGTGGCTACCTTTGTGGCCTCGACCCTCCTCAGGGTC TCGCTTGCGGCGCGCACCTCCTTCGCGTGGATCGTGTCCGTGATTTCCCT CACGGCAATCATGAATGCTCCCGTCAGGCCGCTCCTGGACAGCAGCGCTC TGCAGGCGTTGGACGACAGGGGGGAGTACGGGAAGCAGAGGCTTTGGGGG CAGTGGGGTTTCGGGGTGAGATATGTCTATAAAATTGGAAGAGAAAGAGA GACTATAACAGGGATCTATCTATCTATCTATATATATACATACCCGACAG GGAATAGGTAAAAAAAAACGATGGGTTTTACAATTAAGGAGGGGGGGCGT TCCGGGGTTTCGATTGAGTAACGGTATATCGATATAAGATAGATAGATAG AGAGAGAGAGATAAGTTAGCCCCGCGTGTGTGTTGTTGTCCATTCCAAGA GGAACCTCCCTCCAAAACGTTCTTGATATTTGCAAGAGAAACTGTAATAC ATTAATGCAGATATATACAGAAACAGTTCTCGCGTGTATTACAGTTCTCG CGTGTATTTTGCGTTCTCTCTCTGATCTGTGCTCGCGCGCATCATCGCTA GATCGGGTCGTTCCTGACGGGTCGACTGCTGTCCAGTTACGGGTTTAAGG CGGCATTCTACATGCACGCGGCGTTCTCGCTCCCAACGTTGCTTATCCTG TTACATTTCAACCCCAACAAGGAGAAGCGGCCGAAGGGTCCCCCCCCCAA GTTCGGCGAGCTTTATAGGCTCGTAGTGCACGATCCGGACGTTACGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig189277:265..1163+

>mRNA_H-elongata_contig189277.5197.1 ID=mRNA_H-elongata_contig189277.5197.1|Name=mRNA_H-elongata_contig189277.5197.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1026bp|location=Sequence derived from alignment at H-elongata_contig189277:265..1163+ (Himanthalia elongata Himel1 dioecious)
TTGGACGGAAGACAAATAGGGCACCTTGGCGCCATCACCCCGGCGATGAC
CTTTATATTCACGCCGCTGTGGGGGGCCCTGACGGACCGGTCGGGCATGC
TCAAGCAGATCCTCGTGGCTACCTTTGTGGCCTCGACCCTCCTCAGGGTC
TCGCTTGCGGCGCGCACCTCCTTCGCGTGGATCGTGTCCGTGATTTCCCT
CACGGCAATCATGAATGCTCCCGTCAGGCCGCTCCTGGACAGCAGCGCTC
TGCAGGCGTTGGACGACAGGGGGGAGTACGGGAAGCAGAGGCTTTGGGGG
CAGTGGGGTTTCGGGTTGGACGGAAGACAAATAGGGCACCTTGGCGCCAT
CACCCCGGCGATGACCTTTATATTCACGCCGCTGTGGGGGGCCCTGACGG
ACCGGTCGGGCATGCTCAAGCAGATCCTCGTGGCTACCTTTGTGGCCTCG
ACCCTCCTCAGGGTCTCGCTTGCGGCGCGCACCTCCTTCGCGTGGATCGT
GTCCGTGATTTCCCTCACGGCAATCATGAATGCTCCCGTCAGGCCGCTCC
TGGACAGCAGCGCTCTGCAGGCGTTGGACGACAGGGGGGAGTACGGGAAG
CAGAGGCTTTGGGGGCAGTGGGGTTTCGGGATCGGGTCGTTCCTGACGGG
TCGACTGCTGTCCAGTTACGGGTTTAAGGCGGCATTCTACATGCACGCGG
CGTTCTCGCTCCCAACGTTGCTTATCCTGTTACATTTCAACCCCAACAAG
GAGAAGCGGCCGAAGGGTCCCCCCCCCAAGTTCGGCGAGCTTTATAGGCT
CGTAGTGCACGATCCGGACGTTACGGTGATCGGGTCGTTCCTGACGGGTC
GACTGCTGTCCAGTTACGGGTTTAAGGCGGCATTCTACATGCACGCGGCG
TTCTCGCTCCCAACGTTGCTTATCCTGTTACATTTCAACCCCAACAAGGA
GAAGCGGCCGAAGGGTCCCCCCCCCAAGTTCGGCGAGCTTTATAGGCTCG
TAGTGCACGATCCGGACGTTACGGTG
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