mRNA_H-elongata_contig189085.5191.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig189085.5191.1
Unique NamemRNA_H-elongata_contig189085.5191.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig189085.5191.1 vs. uniprot
Match: A0A6H5JEY2_9PHAE (HTH CENPB-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEY2_9PHAE)

HSP 1 Score: 425 bits (1093), Expect = 2.260e-144
Identity = 208/268 (77.61%), Postives = 229/268 (85.45%), Query Frame = 1
Query:   34 QTIKIGISGVLIQTQAKKIASEMGVADFKASNGWLQGFLTRFGFSDVNLHGEAGDEDRAKVEETIAAIRQQPEGFDVEFILNMDETGLFFRCFPRSTYVARDERAAGLNRKTSRGSKAMKAKDCCTVVACCNTTGSLKVPLAVISTAKNPMVFRHVRKSPFPYYSQPSAWLDSSICQQWFDDVFTPFVKQATGKKVSLLWDNCPGYIIKSADPQITIIFLPPNVTSVNQPMDMGILHALKCQYKTEMVAKLAAFIEDWDTVRARKIRR 837
            +T KIG+SG++IQTQA K ASEMG  DF AS GWL  FL R+GF  +NLHGEAGD D+ K EE IA IR+Q EGFDVE I NMDETGLFFRCFPR TYV R E AAG+NRKT+RGSKAMKAKD CTVVACCNTTGSLKVPLAVISTAKNPMVFRH+R+SP PYYSQ SAWLDS++CQ+WFD+VF PFVK+ TGKKV LLWDNCPG+ IK+ DPQI IIFLPPNVTSV QPMDMGIL ALKCQYKTEMVA+LA  I+ WD VRARKIRR
Sbjct:   48 ETTKIGLSGIMIQTQATKFASEMGKKDFTASKGWLHRFLKRYGFKHINLHGEAGDVDKTKYEEQIAKIREQLEGFDVELIFNMDETGLFFRCFPRGTYVTRAEDAAGVNRKTARGSKAMKAKDRCTVVACCNTTGSLKVPLAVISTAKNPMVFRHIRRSPIPYYSQQSAWLDSTLCQRWFDEVFVPFVKKTTGKKVVLLWDNCPGHKIKNDDPQIIIIFLPPNVTSVFQPMDMGILFALKCQYKTEMVARLADLIDVWDAVRARKIRR 315          
BLAST of mRNA_H-elongata_contig189085.5191.1 vs. uniprot
Match: A0A6H5JV64_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV64_9PHAE)

HSP 1 Score: 425 bits (1093), Expect = 1.220e-142
Identity = 208/268 (77.61%), Postives = 229/268 (85.45%), Query Frame = 1
Query:   34 QTIKIGISGVLIQTQAKKIASEMGVADFKASNGWLQGFLTRFGFSDVNLHGEAGDEDRAKVEETIAAIRQQPEGFDVEFILNMDETGLFFRCFPRSTYVARDERAAGLNRKTSRGSKAMKAKDCCTVVACCNTTGSLKVPLAVISTAKNPMVFRHVRKSPFPYYSQPSAWLDSSICQQWFDDVFTPFVKQATGKKVSLLWDNCPGYIIKSADPQITIIFLPPNVTSVNQPMDMGILHALKCQYKTEMVAKLAAFIEDWDTVRARKIRR 837
            +T KIG+SG++IQTQA K ASEMG  DF AS GWL  FL R+GF  +NLHGEAGD D+ K EE IA IR+Q EGFDVE I NMDETGLFFRCFPR TYV R E AAG+NRKT+RGSKAMKAKD CTVVACCNTTGSLKVPLAVISTAKNPMVFRH+R+SP PYYSQ SAWLDS++CQ+WFD+VF PFVK+ TGKKV LLWDNCPG+ IK+ DPQI IIFLPPNVTSV QPMDMGIL ALKCQYKTEMVA+LA  I+ WD VRARKIRR
Sbjct:  253 ETTKIGLSGIMIQTQATKFASEMGKKDFTASKGWLHRFLKRYGFKHINLHGEAGDVDKTKYEEQIAKIREQLEGFDVELIFNMDETGLFFRCFPRGTYVTRAEDAAGVNRKTARGSKAMKAKDRCTVVACCNTTGSLKVPLAVISTAKNPMVFRHIRRSPIPYYSQQSAWLDSTLCQRWFDEVFVPFVKKTTGKKVVLLWDNCPGHKIKNDDPQIIIIFLPPNVTSVFQPMDMGILFALKCQYKTEMVARLADLIDVWDAVRARKIRR 520          
BLAST of mRNA_H-elongata_contig189085.5191.1 vs. uniprot
Match: A0A6H5JNS8_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNS8_9PHAE)

HSP 1 Score: 389 bits (998), Expect = 1.810e-129
Identity = 193/268 (72.01%), Postives = 220/268 (82.09%), Query Frame = 1
Query:   43 KIGISGVLIQTQAKKIASEMGVADFKASNGWLQGFLTRFGFSDVNLHGEAGDEDRAKVEETIAAIRQQPEGFDVEFILNMDETGLFFRCFPRSTYVARDERAAGLNRKTSRGSKAMKAKDCCTVVACCNTTGSLKVP---LAVISTAKNPMVFRHVRKSPFPYYSQPSAWLDSSICQQWFDDVFTPFVKQATGKKVSLLWDNCPGYIIKSADPQITIIFLPPNVTSVNQPMDMGILHALKCQYKTEMVAKLAAFIEDWDTVRARKIRR 837
            K+G+SG +IQ QA KIA++MG  +FKA+NGWL  FL R+ F+ V LHGEAGD D+ KV E I  IR+Q + FDV+FI NMDE GLFFRCFPR TYV R E AAG+N KT+RGSKAMKAKD CTVVACCNTTGSL VP   LAVIST+K PMVFRHVRK P PY++Q SAWLD++ICQ+WFD+VF PFVK  T KKV+LLWDNCPG+ IKS DPQI IIFLPPNV SV QPM+MGIL  LKCQYKTEMVA+LA  IEDWDTVRARKI+R
Sbjct:   85 KMGVSGSMIQAQALKIAAQMGKTNFKATNGWLYRFLKRYSFTHVQLHGEAGDVDKQKVAEEIERIREQLQEFDVDFIFNMDEMGLFFRCFPRGTYVTRGEAAAGVNSKTARGSKAMKAKDRCTVVACCNTTGSLMVPFXPLAVISTSKKPMVFRHVRKPPCPYFAQSSAWLDAAICQRWFDEVFVPFVKGKTSKKVALLWDNCPGHKIKSNDPQIVIIFLPPNVNSVYQPMNMGILFVLKCQYKTEMVARLADLIEDWDTVRARKIQR 352          
BLAST of mRNA_H-elongata_contig189085.5191.1 vs. uniprot
Match: A0A6H5KQ75_9PHAE (HTH CENPB-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ75_9PHAE)

HSP 1 Score: 368 bits (944), Expect = 4.350e-123
Identity = 182/268 (67.91%), Postives = 213/268 (79.48%), Query Frame = 1
Query:   34 QTIKIGISGVLIQTQAKKIASEMGVADFKASNGWLQGFLTRFGFSDVNLHGEAGDEDRAKVEETIAAIRQQPEGFDVEFILNMDETGLFFRCFPRSTYVARDERAAGLNRKTSRGSKAMKAKDCCTVVACCNTTGSLKVPLAVISTAKNPMVFRHVRKSPFPYYSQPSAWLDSSICQQWFDDVFTPFVKQATGKKVSLLWDNCPGYIIKSADPQITIIFLPPNVTSVNQPMDMGILHALKCQYKTEMVAKLAAFIEDWDTVRARKIRR 837
            QT K+G+SG++IQTQA K A+EM V +F ASNGWL  FL+R+G   +NLH EAG+ ++A  E+ IA IR+Q EGF+ E I NMDETGLF RCFPR TYV R E AAGLN+KT+RGSKAMKAKD CTVVACCNTTGSLKVPLAVI TAK+PMVFRHVRK   PYY++ SAWLDS++CQ+WFD+VF PFVK+ TGKKV+LLWDNCPG+ IK+ DPQI              PM+MGIL ALKCQYKT+MV +LA  IEDWDT RARKIRR
Sbjct:  199 QTTKLGLSGIMIQTQATKFAAEMNVTNFTASNGWLHRFLSRYGLVHINLHREAGEVNKAAAEKEIAQIREQLEGFEDELIFNMDETGLFHRCFPRGTYVTRSEGAAGLNQKTARGSKAMKAKDRCTVVACCNTTGSLKVPLAVIHTAKDPMVFRHVRKPACPYYARKSAWLDSALCQRWFDEVFVPFVKKTTGKKVALLWDNCPGHRIKNDDPQI--------------PMNMGILFALKCQYKTDMVMRLATLIEDWDTARARKIRR 452          
BLAST of mRNA_H-elongata_contig189085.5191.1 vs. uniprot
Match: A0A6H5K051_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K051_9PHAE)

HSP 1 Score: 355 bits (910), Expect = 1.810e-119
Identity = 179/265 (67.55%), Postives = 209/265 (78.87%), Query Frame = 1
Query:   43 KIGISGVLIQTQAKKIASEMGVADFKASNGWLQGFLTRFGFSDVNLHGEAGDEDRAKVEETIAAIRQQPEGFDVEFILNMDETGLFFRCFPRSTYVARDERAAGLNRKTSRGSKAMKAKDCCTVVACCNTTGSLKVPLAVISTAKNPMVFRHVRKSPFPYYSQPSAWLDSSICQQWFDDVFTPFVKQATGKKVSLLWDNCPGYIIKSADPQITIIFLPPNVTSVNQPMDMGILHALKCQYKTEMVAKLAAFIEDWDTVRARKIRR 837
            KIG+SG +IQ QA KI ++MG  +FKA+NGWL  FL R+ F+ V LHGEAGD D+ KV E I  IR+  + FDVEFI +MDETGLFFRCFPR TYV + E AAG+N +T RGSKAMKAKD CTVVACCNT GSL VPLAVIST+K  +VFR VRK P PY++Q SAWLD++I Q+WFD+VF PFVK  T  KV+LLWD  PG+ IKS DPQI +IFLPPNV SV QPM MGIL  LK QYKTEMVA+LA  IEDWDTVRAR+++R
Sbjct:   64 KIGVSGSMIQAQALKIVAQMGKNNFKATNGWLHRFLKRYSFTHVQLHGEAGDVDKQKVAEEIERIRKHLQEFDVEFIFDMDETGLFFRCFPRGTYVTKGEAAAGVNSETVRGSKAMKAKDRCTVVACCNTAGSLMVPLAVISTSKKRVVFRLVRKPPCPYFAQDSAWLDAAIYQRWFDEVFVPFVKGKTSTKVALLWDKGPGHKIKSNDPQIVVIFLPPNVPSVYQPMGMGILLVLKRQYKTEMVARLADLIEDWDTVRARQLQR 328          
BLAST of mRNA_H-elongata_contig189085.5191.1 vs. uniprot
Match: A0A6H5JLK3_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLK3_9PHAE)

HSP 1 Score: 331 bits (848), Expect = 1.230e-108
Identity = 173/266 (65.04%), Postives = 196/266 (73.68%), Query Frame = 1
Query:   37 TIKIGISGVLIQTQAKKIASEMGVADFKASNGWLQGFLTRFGFSDVNLHGEAGDEDRAKVEETIAAIRQQPEGFDVEFILNMDETGLFFRCFPRSTYVARDERAAGLNRKTSRGSKAMKAKDCCTVVACCNTTGSLKVPLAVISTAKNPMVFRHVRKSPFPYYSQPSAWLDSSICQQWFDDVFTPFVKQATGKKVSLLWDNCPGYIIKSADPQITIIFLPPNVTSVNQPMDMGILHALKCQYKTEMVAKLAAFIEDWDTVRARKIR 834
            T K+G+SG++IQTQA K+A+EM V  F ASNGWL  FL+R+G   +NLHGEAGD ++A  E+ IA IR+Q EGFDVE I NMDETGLF RC            A GLN+K +RGSKAMKAKD CTVVACCNTTGSLKVPLAVI TAK+PMVFRH                      +WFD VF PFVK+ TGKKV+LLWDNCPG+ IK+ DPQI IIFLPPNV SV QPMDMGIL ALKCQYKTEMV +LAA IEDWDT RAR+IR
Sbjct:    3 TTKLGLSGIMIQTQAPKLAAEMNVTHFTASNGWLHRFLSRYGLVHINLHGEAGDVNKAAAEKKIAQIREQLEGFDVELIFNMDETGLFHRC---------SRGAPGLNQKNARGSKAMKAKDRCTVVACCNTTGSLKVPLAVIHTAKDPMVFRH----------------------RWFDKVFVPFVKKTTGKKVALLWDNCPGHRIKNDDPQIVIIFLPPNVMSVFQPMDMGILFALKCQYKTEMVMRLAALIEDWDTARARQIR 237          
BLAST of mRNA_H-elongata_contig189085.5191.1 vs. uniprot
Match: A0A6H5JV34_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV34_9PHAE)

HSP 1 Score: 330 bits (846), Expect = 9.300e-108
Identity = 166/267 (62.17%), Postives = 196/267 (73.41%), Query Frame = 1
Query:   34 QTIKIGISGVLIQTQAKKIASEMGVADFKASNGWLQGFLTRFGFSDVNLHGEAGDE---------------------------------DRAKVEETIAAIRQQPEGFDVEFILNMDETGLFFRCFPRSTYVARDERAAGLNRKTSRGSKAMKAKDCCTVVACCNTTGSLKVPLAVISTAKNPMVFRHVRKSPFPYYSQPSAWLDSSICQQWFDDVFTPFVKQATGKKVSLLWDNCPGYIIKSADPQITIIFLPPNVTSVNQPMDMG 735
            QT K+G+SG++I+TQA K A+E+ V +F AS+GWL  FL+R+G   +NLHGEAGD                                  ++A  E+ IA I +Q +GFDVE I NM+ETGLF RCFPR TYV R E AAGLN+KT+RGSKAMKAKD CTVV+CCNTTGSLKVPLAVI TAK+PMVFRHVRK   PYY+Q S WLDSS+CQ+WFD+VF PFVK+ TGKKV+LLWDNCPG+ IK+ DPQI IIFLPPNVTSV QPMDMG
Sbjct:    2 QTTKLGLSGIMIRTQATKFAAEINVTNFTASDGWLHRFLSRYGLVHINLHGEAGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKAAAEKEIAQIWEQLQGFDVELIFNMEETGLFHRCFPRGTYVTRSESAAGLNQKTARGSKAMKAKDRCTVVSCCNTTGSLKVPLAVIHTAKDPMVFRHVRKPACPYYAQKSGWLDSSLCQRWFDEVFVPFVKKTTGKKVALLWDNCPGHRIKNDDPQIVIIFLPPNVTSVFQPMDMG 268          
BLAST of mRNA_H-elongata_contig189085.5191.1 vs. uniprot
Match: A0A6H5KA74_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA74_9PHAE)

HSP 1 Score: 329 bits (844), Expect = 9.610e-105
Identity = 179/343 (52.19%), Postives = 210/343 (61.22%), Query Frame = 1
Query:   37 TIKIGISGVLIQTQAKKIASEMGVADFKASNGWLQGFLTRFGFSDVNLHGEAGDEDRAKVEETIAAIRQQPEGFDVEFILNMDETGLFFRCFPRS--------------------------------------------------------------------------------------------TYVARDERAAGLNRKTSRGSKAMKAKDCCTVVACCNTTGSLKVPLAVISTAKNPMVFRHVRKS--PFPYYSQPSAWLDSSICQQWFDDVFTPFVKQATGKKVSLLWDNCPGYIIKSADPQITIIFLPPNVTSVNQPMDMGILHALKCQYKTEMVAK 783
            T K+G+SG++IQTQA K A+EM V +F ASNGWL  F +R+G   +NLHGEAGD ++A  E+ IA IR+Q EGFDVE I NMDETGLF RCFPR                                                                                             TYV R E AAGLN+KT+RGSKAMKAKD CTVVACCNTTGSLKVPLA+I TAK+PMVFR VRK   P+ YY+Q SAWLDS++CQ+WFD+VF PFVK+ TGKK++LLWDNCPG+ IK+ DPQI IIFLPPNVTSV QPMDMGIL ALKCQYKT+M+ +
Sbjct:  241 TTKLGLSGIMIQTQATKFAAEMNVTNFTASNGWLHRFFSRYGLVHINLHGEAGDVNKAAAEKEIAQIREQLEGFDVELIFNMDETGLFHRCFPRGMYVTRSEGAAGLNQKTARGSKAMKAKDRCTVVACCNTTGSLKVPLAIIHXEGFDVELIFNMDETGLFYRCFXXXXXXXXXXXXXXXXXXPRGTYVTRSEGAAGLNQKTARGSKAMKAKDRCTVVACCNTTGSLKVPLAIIHTAKDPMVFRQVRKPACPYLYYAQKSAWLDSALCQRWFDEVFVPFVKKTTGKKMALLWDNCPGHRIKNDDPQIVIIFLPPNVTSVFQPMDMGILFALKCQYKTKMLMR 583          
BLAST of mRNA_H-elongata_contig189085.5191.1 vs. uniprot
Match: A0A6H5KFG9_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFG9_9PHAE)

HSP 1 Score: 315 bits (808), Expect = 5.720e-103
Identity = 165/267 (61.80%), Postives = 189/267 (70.79%), Query Frame = 1
Query:   37 TIKIGISGVLIQTQAKKIASEMGVADFKASNGWLQGFLTRFGFSDVNLHGEAGDEDRAKVEETIAAIRQQPEGFDVEFILNMDETGLFFRCFPRSTYVARDERAAGLNRKTSRGSKAMKAKDCCTVVACCNTTGSLKVPLAVISTAKNPMVFRHVRKSPFPYYSQPSAWLDSSICQQWFDDVFTPFVKQATGKKVSLLWDNCPGYIIKSADPQITIIFLPPNVTSVNQPMDMGILHALKCQYKTEMVAKLAAFIEDWDTVRARKIRR 837
            T KIG+SG +IQ +A K ASEMG+    ASNGWL   L R     +NLHGEAGD D+ KV+E IA   +Q   FDVEFI NMDET LF+RCFPR TYV R E AAG+N+ T+RGSKAMKA                 VPLAVI TA NPMVFR VR+ P PYY+Q SAWLD+S+CQ+WFD+VF PFVK  T +KV+L WDNCPG+ I + DPQI IIFLPP VTSV QPMDMG L  LKCQ K EMV +L+  IEDWDTVRAR I R
Sbjct:   56 TTKIGLSGTMIQHRAVKFASEMGIK-LAASNGWLHRSLKRCQLKHINLHGEAGDVDQEKVQEKIAQTEEQLNEFDVEFIFNMDETALFYRCFPRGTYVTRQEDAAGVNKNTARGSKAMKAX----------------VPLAVIGTAANPMVFRKVRELPCPYYAQASAWLDASLCQRWFDEVFVPFVKSKTARKVTLTWDNCPGHKIINNDPQIVIIFLPPLVTSVFQPMDMGALFTLKCQNKPEMVVRLSDVIEDWDTVRARNIPR 305          
BLAST of mRNA_H-elongata_contig189085.5191.1 vs. uniprot
Match: A0A6H5K549_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K549_9PHAE)

HSP 1 Score: 313 bits (802), Expect = 1.500e-101
Identity = 164/269 (60.97%), Postives = 193/269 (71.75%), Query Frame = 1
Query:   43 KIGISGVLIQTQAKKIASEMGVADFKASNGWLQGFLTRFGFSDVNLHGEAGDEDRAKVEETIAAIRQQPEGFDVEFILNMDETGLFFRCFPRSTYVARDERAAGLNRKTSRGSKAMKAKDCCTVVACCNTTGSLKVPLAVISTAKNPMVFRHVRKSPFPYYSQPSAWLDSS----ICQQWFDDVFTPFVKQATGKKVSLLWDNCPGYIIKSADPQITIIFLPPNVTSVNQPMDMGILHALKCQYKTEMVAKLAAFIEDWDTVRARKIRR 837
            KIG+SG +IQ QA KIA++MG A+FKA+NGWL  FL R+ F+ V L G+AGD D+ KV E I  IR+Q + FDVEFI NMDE GLFFRCFPR T+V R + AAG+N KT+RGSKAMKAKD CTVVACCNT GSL VPLAVIST++  M+FRHVRK+              S    +          PFVK  T KK +LLWDNCPG+ I+S D Q+ II LPPNVTS+ QP DMGIL  LKCQYK E+VA+LA  IEDWDTVRARK +R
Sbjct:  105 KIGVSGSMIQAQALKIAAQMGKANFKATNGWLHRFLKRYSFTYVQLRGKAGDVDKQKVAEEIERIREQLQEFDVEFIFNMDEMGLFFRCFPRGTHVTRGQAAAGVNSKTARGSKAMKAKDRCTVVACCNTIGSLMVPLAVISTSRKSMIFRHVRKTAMSLLRPGECLARRSHLPAVTSSRTGTPSIPFVKGKTSKKEALLWDNCPGHKIESNDSQVVIILLPPNVTSIYQPTDMGILFVLKCQYKAEVVARLADLIEDWDTVRARKTQR 373          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig189085.5191.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JEY2_9PHAE2.260e-14477.61HTH CENPB-type domain-containing protein n=2 Tax=E... [more]
A0A6H5JV64_9PHAE1.220e-14277.61HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5JNS8_9PHAE1.810e-12972.01HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5KQ75_9PHAE4.350e-12367.91HTH CENPB-type domain-containing protein (Fragment... [more]
A0A6H5K051_9PHAE1.810e-11967.55HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5JLK3_9PHAE1.230e-10865.04HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5JV34_9PHAE9.300e-10862.17HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5KA74_9PHAE9.610e-10552.19HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5KFG9_9PHAE5.720e-10361.80HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5K549_9PHAE1.500e-10160.97HTH CENPB-type domain-containing protein n=1 Tax=E... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig189085contigH-elongata_contig189085:317..1156 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score196.4
Seed ortholog evalue1.7e-47
Seed eggNOG ortholog6669.EFX68856
EggNOG free text desc.Jerky protein homolog-like
EggNOG OGs38HJW@33154,3BCG5@33208,3CXR0@33213,420II@6656,KOG3105@1,KOG3105@2759
COG Functional cat.BD
Best tax levelArthropoda
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size840
Cds size840
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930081.2009845-CDS-H-elongata_contig189085:316..11561622930081.2009845-CDS-H-elongata_contig189085:316..1156Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig189085 317..1156 +
1691679273.5546849-CDS-H-elongata_contig189085:316..11561691679273.5546849-CDS-H-elongata_contig189085:316..1156Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig189085 317..1156 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig189085.5191.1prot_H-elongata_contig189085.5191.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig189085 317..1156 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig189085.5191.1

>prot_H-elongata_contig189085.5191.1 ID=prot_H-elongata_contig189085.5191.1|Name=mRNA_H-elongata_contig189085.5191.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=280bp
NTSLPVGGGSTQTIKIGISGVLIQTQAKKIASEMGVADFKASNGWLQGFL
TRFGFSDVNLHGEAGDEDRAKVEETIAAIRQQPEGFDVEFILNMDETGLF
FRCFPRSTYVARDERAAGLNRKTSRGSKAMKAKDCCTVVACCNTTGSLKV
PLAVISTAKNPMVFRHVRKSPFPYYSQPSAWLDSSICQQWFDDVFTPFVK
QATGKKVSLLWDNCPGYIIKSADPQITIIFLPPNVTSVNQPMDMGILHAL
KCQYKTEMVAKLAAFIEDWDTVRARKIRR*
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mRNA from alignment at H-elongata_contig189085:317..1156+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig189085.5191.1 ID=mRNA_H-elongata_contig189085.5191.1|Name=mRNA_H-elongata_contig189085.5191.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=840bp|location=Sequence derived from alignment at H-elongata_contig189085:317..1156+ (Himanthalia elongata Himel1 dioecious)
AATACGTCGTTGCCTGTCGGTGGTGGTTCTACGCAGACAATCAAGATCGG GATTAGTGGTGTCTTGATTCAGACCCAGGCAAAAAAAATCGCATCGGAAA TGGGCGTGGCGGACTTCAAGGCGAGTAACGGCTGGCTCCAGGGCTTCCTC ACCCGCTTCGGCTTCTCGGACGTCAACCTGCACGGGGAAGCTGGCGACGA GGACAGGGCGAAGGTGGAGGAAACAATTGCAGCCATTCGACAGCAGCCGG AGGGGTTTGACGTTGAGTTCATCCTCAACATGGACGAGACGGGGCTCTTC TTCCGGTGTTTCCCAAGGAGCACGTACGTTGCGAGGGACGAGCGTGCTGC CGGGCTGAACAGAAAAACCTCACGAGGTTCCAAAGCCATGAAGGCCAAGG ACTGCTGCACGGTTGTCGCCTGCTGCAACACCACCGGCTCGCTCAAGGTG CCGCTCGCTGTCATCAGCACGGCGAAGAACCCGATGGTTTTCCGGCATGT CCGCAAGTCACCATTCCCGTACTACAGCCAACCGAGTGCCTGGCTAGATT CGTCTATCTGCCAACAGTGGTTTGACGATGTCTTCACCCCCTTTGTGAAG CAGGCAACCGGCAAGAAGGTTTCCCTCTTGTGGGACAACTGTCCTGGCTA CATCATCAAGAGCGCCGACCCGCAAATCACCATAATCTTCTTGCCTCCCA ACGTGACATCCGTCAACCAGCCCATGGATATGGGTATCCTGCATGCCCTC AAGTGCCAGTACAAGACCGAGATGGTGGCGAAGCTGGCGGCCTTTATCGA GGACTGGGACACGGTCCGAGCACGGAAAATTCGCAGGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig189085:317..1156+

>mRNA_H-elongata_contig189085.5191.1 ID=mRNA_H-elongata_contig189085.5191.1|Name=mRNA_H-elongata_contig189085.5191.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1680bp|location=Sequence derived from alignment at H-elongata_contig189085:317..1156+ (Himanthalia elongata Himel1 dioecious)
AATACGTCGTTGCCTGTCGGTGGTGGTTCTACGCAGACAATCAAGATCGG
GATTAGTGGTGTCTTGATTCAGACCCAGGCAAAAAAAATCGCATCGGAAA
TGGGCGTGGCGGACTTCAAGGCGAGTAACGGCTGGCTCCAGGGCTTCCTC
ACCCGCTTCGGCTTCTCGGACGTCAACCTGCACGGGGAAGCTGGCGACGA
GGACAGGGCGAAGGTGGAGGAAACAATTGCAGCCATTCGACAGCAGCCGG
AGGGGTTTGACGTTGAGTTCATCCTCAACATGGACGAGACGGGGCTCTTC
TTCCGGTGTTTCCCAAGGAGCACGTACGTTGCGAGGGACGAGCGTGCTGC
CGGGCTGAACAGAAAAACCTCACGAGGTTCCAAAGCCATGAAGGCCAAGG
ACTGCTGCACGGTTGTCGCCTGCTGCAACACCACCGGCTCGCTCAAGGTG
CCGCTCGCTGTCATCAGCACGGCGAAGAACCCGATGGTTTTCCGGCATGT
CCGCAAGTCACCATTCCCGTACTACAGCCAACCGAGTGCCTGGCTAGATT
CGTCTATCTGCCAACAGTGGTTTGACGATGTCTTCACCCCCTTTGTGAAG
CAGGCAACCGGCAAGAAGGTTTCCCTCTTGTGGGACAACTGTCCTGGCTA
CATCATCAAGAGCGCCGACCCGCAAATCACCATAATCTTCTTGCCTCCCA
ACGTGACATCCGTCAACCAGCCCATGGATATGGGTATCCTGCATGCCCTC
AAGTGCCAGTACAAGACCGAGATGGTGGCGAAGCTGGCGGCCTTTATCGA
GGACTGGGACACGGTCCGAGCACGGAAAATTCGCAGGTAAAATACGTCGT
TGCCTGTCGGTGGTGGTTCTACGCAGACAATCAAGATCGGGATTAGTGGT
GTCTTGATTCAGACCCAGGCAAAAAAAATCGCATCGGAAATGGGCGTGGC
GGACTTCAAGGCGAGTAACGGCTGGCTCCAGGGCTTCCTCACCCGCTTCG
GCTTCTCGGACGTCAACCTGCACGGGGAAGCTGGCGACGAGGACAGGGCG
AAGGTGGAGGAAACAATTGCAGCCATTCGACAGCAGCCGGAGGGGTTTGA
CGTTGAGTTCATCCTCAACATGGACGAGACGGGGCTCTTCTTCCGGTGTT
TCCCAAGGAGCACGTACGTTGCGAGGGACGAGCGTGCTGCCGGGCTGAAC
AGAAAAACCTCACGAGGTTCCAAAGCCATGAAGGCCAAGGACTGCTGCAC
GGTTGTCGCCTGCTGCAACACCACCGGCTCGCTCAAGGTGCCGCTCGCTG
TCATCAGCACGGCGAAGAACCCGATGGTTTTCCGGCATGTCCGCAAGTCA
CCATTCCCGTACTACAGCCAACCGAGTGCCTGGCTAGATTCGTCTATCTG
CCAACAGTGGTTTGACGATGTCTTCACCCCCTTTGTGAAGCAGGCAACCG
GCAAGAAGGTTTCCCTCTTGTGGGACAACTGTCCTGGCTACATCATCAAG
AGCGCCGACCCGCAAATCACCATAATCTTCTTGCCTCCCAACGTGACATC
CGTCAACCAGCCCATGGATATGGGTATCCTGCATGCCCTCAAGTGCCAGT
ACAAGACCGAGATGGTGGCGAAGCTGGCGGCCTTTATCGAGGACTGGGAC
ACGGTCCGAGCACGGAAAATTCGCAGGTAA
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