mRNA_H-elongata_contig188726.5178.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig188726.5178.1
Unique NamemRNA_H-elongata_contig188726.5178.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig188726.5178.1 vs. uniprot
Match: A0A6H5JX36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX36_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 6.650e-9
Identity = 27/52 (51.92%), Postives = 33/52 (63.46%), Query Frame = 2
Query:  128 MAQFDREGLRALFLATNGDHWRSNKGWCTDAELQEWYGVFVNADGRVQALIL 283
            MA  DR+ L AL+ AT G  W +N+ W T A L +W+GV VN  GRV AL L
Sbjct:    1 MASTDRDALVALYNATEGGRWSTNRNWNTGAPLSQWHGVHVNDQGRVVALEL 52          
BLAST of mRNA_H-elongata_contig188726.5178.1 vs. uniprot
Match: D7FHA4_ECTSI (Hypothetical leucine rich repeat protein (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHA4_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 7.410e-9
Identity = 28/53 (52.83%), Postives = 35/53 (66.04%), Query Frame = 2
Query:  128 MAQFDREGLRALFLATNGDHWRSNKGWCTDAELQEWYGVFVNADGRVQALILT 286
            M   DR  L ALF +T G  W+ N  W TDA+L +WYGV+VN DGRV+ L L+
Sbjct:    1 MPSEDRAALVALFRSTGGTLWKHNAYWDTDAKLSQWYGVYVNQDGRVKELRLS 53          
BLAST of mRNA_H-elongata_contig188726.5178.1 vs. uniprot
Match: D7FPS8_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPS8_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 1.390e-8
Identity = 29/60 (48.33%), Postives = 34/60 (56.67%), Query Frame = 2
Query:  104 RDVRLTATMAQFDREGLRALFLATNGDHWRSNKGWCTDAELQEWYGVFVNADGRVQALIL 283
            R  ++  T+A  D   L AL+  T GD W    GWCT  ELQEW+GV VN  GRV  L L
Sbjct:   14 RTPKVPFTLAPVDYGALTALYRLTQGDGWTRRDGWCTPVELQEWFGVEVNEQGRVVKLDL 73          
BLAST of mRNA_H-elongata_contig188726.5178.1 vs. uniprot
Match: A0A7X3WE75_9BACT (BIG2 domain-containing protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7X3WE75_9BACT)

HSP 1 Score: 57.8 bits (138), Expect = 1.250e-7
Identity = 24/48 (50.00%), Postives = 33/48 (68.75%), Query Frame = 2
Query:  140 DREGLRALFLATNGDHWRSNKGWCTDAELQEWYGVFVNADGRVQALIL 283
            DR  L AL+++T+G +W+ +  W TD  L  WYGV VNA GRV +L+L
Sbjct:  282 DRSSLIALYISTDGGNWKQSANWLTDEPLSTWYGVGVNAAGRVDSLVL 329          
BLAST of mRNA_H-elongata_contig188726.5178.1 vs. uniprot
Match: A0A6B1AS51_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6B1AS51_9GAMM)

HSP 1 Score: 57.4 bits (137), Expect = 1.670e-7
Identity = 29/52 (55.77%), Postives = 37/52 (71.15%), Query Frame = 2
Query:  131 AQFDREGLRALFLATNGDHWRSNKGWCTDAELQEWYGVFVNADGRVQALILT 286
            AQ DR  L AL+ AT+G +W +N+ W TDA L EWYGV V+A+GRV  L L+
Sbjct:  480 AQDDRSVLVALYEATDGPNWVNNEKWLTDAPLGEWYGVEVDANGRVIRLELS 531          
BLAST of mRNA_H-elongata_contig188726.5178.1 vs. uniprot
Match: A0A6H5JBQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBQ0_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 1.680e-7
Identity = 28/60 (46.67%), Postives = 34/60 (56.67%), Query Frame = 2
Query:  104 RDVRLTATMAQFDREGLRALFLATNGDHWRSNKGWCTDAELQEWYGVFVNADGRVQALIL 283
            R  ++  T+A  D   L AL+  T GD W    GWCT  +LQEW+GV VN  GRV  L L
Sbjct:   16 RTPKVPFTLAPRDYGALAALYHLTQGDGWIHRDGWCTPVDLQEWFGVDVNEQGRVVKLDL 75          
BLAST of mRNA_H-elongata_contig188726.5178.1 vs. uniprot
Match: D7FUH5_ECTSI (Leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUH5_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 7.830e-7
Identity = 28/52 (53.85%), Postives = 30/52 (57.69%), Query Frame = 2
Query:  128 MAQFDREGLRALFLATNGDHWRSNKGWCTDAELQEWYGVFVNADGRVQALIL 283
            MA  DR  L ALF AT G  WR +  W T   L  WYGV VNA+GRV  L L
Sbjct:    1 MASTDRNALIALFQATRGAEWRKSDNWGTSEGLGTWYGVDVNAEGRVVKLSL 52          
BLAST of mRNA_H-elongata_contig188726.5178.1 vs. uniprot
Match: A0A7K1ZHU6_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Bacteroidetes bacterium SB0668_bin_1 TaxID=2604896 RepID=A0A7K1ZHU6_9BACT)

HSP 1 Score: 53.9 bits (128), Expect = 1.050e-6
Identity = 24/48 (50.00%), Postives = 30/48 (62.50%), Query Frame = 2
Query:  140 DREGLRALFLATNGDHWRSNKGWCTDAELQEWYGVFVNADGRVQALIL 283
            DR  L A + +T GD WR N  W +D  L +W+GVF +ADGRV  L L
Sbjct:   49 DRNALIAFYDSTGGDSWRGNVYWKSDKPLDQWFGVFTDADGRVTELHL 96          
BLAST of mRNA_H-elongata_contig188726.5178.1 vs. uniprot
Match: A0A7X3Q9V6_9BACT (Uncharacterized protein n=1 Tax=Gemmatimonadales bacterium TaxID=2448054 RepID=A0A7X3Q9V6_9BACT)

HSP 1 Score: 54.7 bits (130), Expect = 1.500e-6
Identity = 24/51 (47.06%), Postives = 32/51 (62.75%), Query Frame = 2
Query:  116 LTATMAQFDREGLRALFLATNGDHWRSNKGWCTDAELQEWYGVFVNADGRV 268
            +T T    DRE L AL+ +T G  W +N  W TD  L++WYG+ V+A GRV
Sbjct:  192 ITVTGVGSDREALLALYHSTGGASWLNNDNWLTDEPLEDWYGIEVDAGGRV 242          
BLAST of mRNA_H-elongata_contig188726.5178.1 vs. uniprot
Match: D7FUC9_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUC9_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 1.320e-5
Identity = 24/52 (46.15%), Postives = 31/52 (59.62%), Query Frame = 2
Query:  128 MAQFDREGLRALFLATNGDHWRSNKGWCTDAELQEWYGVFVNADGRVQALIL 283
            MA  DR+ L ALF +  G  WR  + W T A+L+ W+GV +N  GRV  L L
Sbjct:    1 MASTDRDALVALFRSAGGATWRRKENWDTAADLESWFGVILNNQGRVAELKL 52          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig188726.5178.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6H5JX36_9PHAE6.650e-951.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHA4_ECTSI7.410e-952.83Hypothetical leucine rich repeat protein (Partial)... [more]
D7FPS8_ECTSI1.390e-848.33Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A7X3WE75_9BACT1.250e-750.00BIG2 domain-containing protein n=1 Tax=Gemmatimona... [more]
A0A6B1AS51_9GAMM1.670e-755.77Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A6H5JBQ0_9PHAE1.680e-746.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUH5_ECTSI7.830e-753.85Leucine rich repeat protein n=1 Tax=Ectocarpus sil... [more]
A0A7K1ZHU6_9BACT1.050e-650.00Uncharacterized protein (Fragment) n=1 Tax=Bactero... [more]
A0A7X3Q9V6_9BACT1.500e-647.06Uncharacterized protein n=1 Tax=Gemmatimonadales b... [more]
D7FUC9_ECTSI1.320e-546.15LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig188726contigH-elongata_contig188726:378..818 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score60.8
Seed ortholog evalue2.1e-07
Seed eggNOG ortholog470145.BACCOP_00862
KEGG koko:K07126,ko:K09973
EggNOG free text desc.IgA Peptidase M64
EggNOG OGs2FSTA@200643,4AMKX@815,4NQGD@976,COG4886@1,COG4886@2
COG Functional cat.N
Best tax levelBacteroidaceae
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size287
Cds size159
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig188726.5178.1prot_H-elongata_contig188726.5178.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig188726 378..536 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930079.786776-CDS-H-elongata_contig188726:377..5361622930079.786776-CDS-H-elongata_contig188726:377..536Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig188726 378..536 -
1691679272.8407085-CDS-H-elongata_contig188726:377..5361691679272.8407085-CDS-H-elongata_contig188726:377..536Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig188726 378..536 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930079.8019717-UTR-H-elongata_contig188726:536..5491622930079.8019717-UTR-H-elongata_contig188726:536..549Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig188726 537..549 -
1691679272.8560216-UTR-H-elongata_contig188726:536..5491691679272.8560216-UTR-H-elongata_contig188726:536..549Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig188726 537..549 -
1622930079.8139272-UTR-H-elongata_contig188726:704..8181622930079.8139272-UTR-H-elongata_contig188726:704..818Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig188726 705..818 -
1691679272.8700416-UTR-H-elongata_contig188726:704..8181691679272.8700416-UTR-H-elongata_contig188726:704..818Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig188726 705..818 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig188726.5178.1

>prot_H-elongata_contig188726.5178.1 ID=prot_H-elongata_contig188726.5178.1|Name=mRNA_H-elongata_contig188726.5178.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=53bp
MAQFDREGLRALFLATNGDHWRSNKGWCTDAELQEWYGVFVNADGRVQAL
ILT
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mRNA from alignment at H-elongata_contig188726:378..818-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig188726.5178.1 ID=mRNA_H-elongata_contig188726.5178.1|Name=mRNA_H-elongata_contig188726.5178.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=441bp|location=Sequence derived from alignment at H-elongata_contig188726:378..818- (Himanthalia elongata Himel1 dioecious)
CTTGCCATTACACCCTCTTCTCGGGCCGAATTCCGAAGTCCTCCTGCGCC AATTTTTTTCAACCTCACATCTCGAGGAGCCTTTTTAAAGGGGCAATCAA TTACGCGACGTACGGTAAGCGTTTTCAGTTAAATTCCGTGCCGCCGTTTT GTCCGTTCCTTCCCCTCTGTCTTGGTATTTTTCCAATGGATGACCACACA GTAGGCTGTACCTAGCTTTGCTTTTTTCTTCGGCTTTACTTCCCTCGATG GGGCCAATCAATCCTCTAGGTTAACAGCAACGATGGCCCAATTCGATCGT GAGGGACTTCGTGCTCTGTTTTTGGCAACCAATGGGGACCACTGGAGAAG CAACAAAGGCTGGTGCACAGATGCAGAGTTACAGGAATGGTATGGAGTTT TCGTCAACGCGGATGGCCGGGTTCAGGCACTAATTTTAACA
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Coding sequence (CDS) from alignment at H-elongata_contig188726:378..818-

>mRNA_H-elongata_contig188726.5178.1 ID=mRNA_H-elongata_contig188726.5178.1|Name=mRNA_H-elongata_contig188726.5178.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=318bp|location=Sequence derived from alignment at H-elongata_contig188726:378..818- (Himanthalia elongata Himel1 dioecious)
ATGGCCCAATTCGATCGTGAGGGACTTCGTGCTCTGTTTTTGGCAACCAA
TGGGGACCACTGGAGAAGCAACAAAGGCTGGTGCACAGATGCAGAGTTAC
AGGAATGGTATGGAGTTTTCGTCAACGCGGATGGCCGGGTTCAGGCACTA
ATTTTAACAATGGCCCAATTCGATCGTGAGGGACTTCGTGCTCTGTTTTT
GGCAACCAATGGGGACCACTGGAGAAGCAACAAAGGCTGGTGCACAGATG
CAGAGTTACAGGAATGGTATGGAGTTTTCGTCAACGCGGATGGCCGGGTT
CAGGCACTAATTTTAACA
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