mRNA_H-elongata_contig188726.5178.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig188726.5178.1 vs. uniprot
Match: A0A6H5JX36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX36_9PHAE) HSP 1 Score: 57.0 bits (136), Expect = 6.650e-9 Identity = 27/52 (51.92%), Postives = 33/52 (63.46%), Query Frame = 2
Query: 128 MAQFDREGLRALFLATNGDHWRSNKGWCTDAELQEWYGVFVNADGRVQALIL 283
MA DR+ L AL+ AT G W +N+ W T A L +W+GV VN GRV AL L
Sbjct: 1 MASTDRDALVALYNATEGGRWSTNRNWNTGAPLSQWHGVHVNDQGRVVALEL 52
BLAST of mRNA_H-elongata_contig188726.5178.1 vs. uniprot
Match: D7FHA4_ECTSI (Hypothetical leucine rich repeat protein (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHA4_ECTSI) HSP 1 Score: 60.1 bits (144), Expect = 7.410e-9 Identity = 28/53 (52.83%), Postives = 35/53 (66.04%), Query Frame = 2
Query: 128 MAQFDREGLRALFLATNGDHWRSNKGWCTDAELQEWYGVFVNADGRVQALILT 286
M DR L ALF +T G W+ N W TDA+L +WYGV+VN DGRV+ L L+
Sbjct: 1 MPSEDRAALVALFRSTGGTLWKHNAYWDTDAKLSQWYGVYVNQDGRVKELRLS 53
BLAST of mRNA_H-elongata_contig188726.5178.1 vs. uniprot
Match: D7FPS8_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPS8_ECTSI) HSP 1 Score: 60.5 bits (145), Expect = 1.390e-8 Identity = 29/60 (48.33%), Postives = 34/60 (56.67%), Query Frame = 2
Query: 104 RDVRLTATMAQFDREGLRALFLATNGDHWRSNKGWCTDAELQEWYGVFVNADGRVQALIL 283
R ++ T+A D L AL+ T GD W GWCT ELQEW+GV VN GRV L L
Sbjct: 14 RTPKVPFTLAPVDYGALTALYRLTQGDGWTRRDGWCTPVELQEWFGVEVNEQGRVVKLDL 73
BLAST of mRNA_H-elongata_contig188726.5178.1 vs. uniprot
Match: A0A7X3WE75_9BACT (BIG2 domain-containing protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7X3WE75_9BACT) HSP 1 Score: 57.8 bits (138), Expect = 1.250e-7 Identity = 24/48 (50.00%), Postives = 33/48 (68.75%), Query Frame = 2
Query: 140 DREGLRALFLATNGDHWRSNKGWCTDAELQEWYGVFVNADGRVQALIL 283
DR L AL+++T+G +W+ + W TD L WYGV VNA GRV +L+L
Sbjct: 282 DRSSLIALYISTDGGNWKQSANWLTDEPLSTWYGVGVNAAGRVDSLVL 329
BLAST of mRNA_H-elongata_contig188726.5178.1 vs. uniprot
Match: A0A6B1AS51_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6B1AS51_9GAMM) HSP 1 Score: 57.4 bits (137), Expect = 1.670e-7 Identity = 29/52 (55.77%), Postives = 37/52 (71.15%), Query Frame = 2
Query: 131 AQFDREGLRALFLATNGDHWRSNKGWCTDAELQEWYGVFVNADGRVQALILT 286
AQ DR L AL+ AT+G +W +N+ W TDA L EWYGV V+A+GRV L L+
Sbjct: 480 AQDDRSVLVALYEATDGPNWVNNEKWLTDAPLGEWYGVEVDANGRVIRLELS 531
BLAST of mRNA_H-elongata_contig188726.5178.1 vs. uniprot
Match: A0A6H5JBQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBQ0_9PHAE) HSP 1 Score: 57.4 bits (137), Expect = 1.680e-7 Identity = 28/60 (46.67%), Postives = 34/60 (56.67%), Query Frame = 2
Query: 104 RDVRLTATMAQFDREGLRALFLATNGDHWRSNKGWCTDAELQEWYGVFVNADGRVQALIL 283
R ++ T+A D L AL+ T GD W GWCT +LQEW+GV VN GRV L L
Sbjct: 16 RTPKVPFTLAPRDYGALAALYHLTQGDGWIHRDGWCTPVDLQEWFGVDVNEQGRVVKLDL 75
BLAST of mRNA_H-elongata_contig188726.5178.1 vs. uniprot
Match: D7FUH5_ECTSI (Leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUH5_ECTSI) HSP 1 Score: 55.1 bits (131), Expect = 7.830e-7 Identity = 28/52 (53.85%), Postives = 30/52 (57.69%), Query Frame = 2
Query: 128 MAQFDREGLRALFLATNGDHWRSNKGWCTDAELQEWYGVFVNADGRVQALIL 283
MA DR L ALF AT G WR + W T L WYGV VNA+GRV L L
Sbjct: 1 MASTDRNALIALFQATRGAEWRKSDNWGTSEGLGTWYGVDVNAEGRVVKLSL 52
BLAST of mRNA_H-elongata_contig188726.5178.1 vs. uniprot
Match: A0A7K1ZHU6_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Bacteroidetes bacterium SB0668_bin_1 TaxID=2604896 RepID=A0A7K1ZHU6_9BACT) HSP 1 Score: 53.9 bits (128), Expect = 1.050e-6 Identity = 24/48 (50.00%), Postives = 30/48 (62.50%), Query Frame = 2
Query: 140 DREGLRALFLATNGDHWRSNKGWCTDAELQEWYGVFVNADGRVQALIL 283
DR L A + +T GD WR N W +D L +W+GVF +ADGRV L L
Sbjct: 49 DRNALIAFYDSTGGDSWRGNVYWKSDKPLDQWFGVFTDADGRVTELHL 96
BLAST of mRNA_H-elongata_contig188726.5178.1 vs. uniprot
Match: A0A7X3Q9V6_9BACT (Uncharacterized protein n=1 Tax=Gemmatimonadales bacterium TaxID=2448054 RepID=A0A7X3Q9V6_9BACT) HSP 1 Score: 54.7 bits (130), Expect = 1.500e-6 Identity = 24/51 (47.06%), Postives = 32/51 (62.75%), Query Frame = 2
Query: 116 LTATMAQFDREGLRALFLATNGDHWRSNKGWCTDAELQEWYGVFVNADGRV 268
+T T DRE L AL+ +T G W +N W TD L++WYG+ V+A GRV
Sbjct: 192 ITVTGVGSDREALLALYHSTGGASWLNNDNWLTDEPLEDWYGIEVDAGGRV 242
BLAST of mRNA_H-elongata_contig188726.5178.1 vs. uniprot
Match: D7FUC9_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUC9_ECTSI) HSP 1 Score: 52.0 bits (123), Expect = 1.320e-5 Identity = 24/52 (46.15%), Postives = 31/52 (59.62%), Query Frame = 2
Query: 128 MAQFDREGLRALFLATNGDHWRSNKGWCTDAELQEWYGVFVNADGRVQALIL 283
MA DR+ L ALF + G WR + W T A+L+ W+GV +N GRV L L
Sbjct: 1 MASTDRDALVALFRSAGGATWRRKENWDTAADLESWFGVILNNQGRVAELKL 52 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig188726.5178.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig188726.5178.1 >prot_H-elongata_contig188726.5178.1 ID=prot_H-elongata_contig188726.5178.1|Name=mRNA_H-elongata_contig188726.5178.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=53bp MAQFDREGLRALFLATNGDHWRSNKGWCTDAELQEWYGVFVNADGRVQALback to top mRNA from alignment at H-elongata_contig188726:378..818- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig188726.5178.1 ID=mRNA_H-elongata_contig188726.5178.1|Name=mRNA_H-elongata_contig188726.5178.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=441bp|location=Sequence derived from alignment at H-elongata_contig188726:378..818- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig188726:378..818- >mRNA_H-elongata_contig188726.5178.1 ID=mRNA_H-elongata_contig188726.5178.1|Name=mRNA_H-elongata_contig188726.5178.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=318bp|location=Sequence derived from alignment at H-elongata_contig188726:378..818- (Himanthalia elongata Himel1 dioecious)back to top |