mRNA_H-elongata_contig18857.5165.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18857.5165.1
Unique NamemRNA_H-elongata_contig18857.5165.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig18857.5165.1 vs. uniprot
Match: D7G9J2_ECTSI (Adenylate/guanylate cyclase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9J2_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 2.130e-10
Identity = 34/46 (73.91%), Postives = 38/46 (82.61%), Query Frame = 1 
Query:    1 MLSKNVRRALKSYCPQPITKELMAERKGLLYEIQRVAVLFVGLSFE 138
            MLSK V RAL+ YCPQ I + L+AER GLL E+QRVAVLFVGLSFE
Sbjct:  407 MLSKEVGRALRGYCPQSIREGLVAERLGLLAELQRVAVLFVGLSFE 452
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BLAST of mRNA_H-elongata_contig18857.5165.1 vs. uniprot
Match: A0A6H5KFZ7_9PHAE (Guanylate cyclase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFZ7_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 2.160e-10
Identity = 34/46 (73.91%), Postives = 38/46 (82.61%), Query Frame = 1 
Query:    1 MLSKNVRRALKSYCPQPITKELMAERKGLLYEIQRVAVLFVGLSFE 138
            MLSK V RAL+ YCPQ I + L+AER GLL E+QRVAVLFVGLSFE
Sbjct:  485 MLSKEVGRALRGYCPQSIREGLVAERLGLLAELQRVAVLFVGLSFE 530
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18857.5165.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G9J2_ECTSI2.130e-1073.91Adenylate/guanylate cyclase n=1 Tax=Ectocarpus sil... [more]
A0A6H5KFZ7_9PHAE2.160e-1073.91Guanylate cyclase domain-containing protein n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18857contigH-elongata_contig18857:4124..4767 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size253
Cds size252
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930078.7591627-CDS-H-elongata_contig18857:4123..41891622930078.7591627-CDS-H-elongata_contig18857:4123..4189Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18857 4124..4189 +
1691679272.5977917-CDS-H-elongata_contig18857:4123..41891691679272.5977917-CDS-H-elongata_contig18857:4123..4189Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18857 4124..4189 +
1622930078.7735486-CDS-H-elongata_contig18857:4581..47671622930078.7735486-CDS-H-elongata_contig18857:4581..4767Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18857 4582..4767 +
1691679272.6053445-CDS-H-elongata_contig18857:4581..47671691679272.6053445-CDS-H-elongata_contig18857:4581..4767Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18857 4582..4767 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18857.5165.1prot_H-elongata_contig18857.5165.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18857 4124..4767 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18857.5165.1

>prot_H-elongata_contig18857.5165.1 ID=prot_H-elongata_contig18857.5165.1|Name=mRNA_H-elongata_contig18857.5165.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=84bp
MLSKNVRRALKSYCPQPITKELMAERKGLLYEIQRVAVLFVGLSFEEGRR
EGESKAQLREEEIVAAASIEQLNVLQASFTRIQS
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mRNA from alignment at H-elongata_contig18857:4124..4767+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18857.5165.1 ID=mRNA_H-elongata_contig18857.5165.1|Name=mRNA_H-elongata_contig18857.5165.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=644bp|location=Sequence derived from alignment at H-elongata_contig18857:4124..4767+ (Himanthalia elongata Himel1 dioecious)
ATGCTTTCCAAGAACGTCCGGCGAGCTCTGAAGAGCTACTGTCCACAACC
CATAACGAAGGAGCTGGTGCGTTCTGATCCACCGCCCCCGCGCCGAAGCG
ATACTCATCGAGACTGAGTCTGAATGAGGTTATACATGTTTTAGAAGAAA
CACTATGCCTTATCTACCCTCGGGCAGGGTACCAAGTCGAACGGATAGTC
ATCCACGTTTCACTCCCACTCCTCATTGTGGAAACAAGGCTTTGTGTGGA
ATATTTTCTTGTCTTAAAACCTGACATGAGATCTAGACCAAGTGGTTGCA
AAGGGTTTGTTAAAGAGGTGAATGATGCGTGTTGTGCTGTATTTTACGAA
CGAATCCTCCAACGGCTGATCCAAGCATTTCGGTGTAGGGCGCAACGTTT
GTTCTTTTCATGGTAAAATGTAGCTTTTTTCTTATTTTTTCAAATCTCAT
TTGGTCAGATGGCGGAGAGAAAGGGTCTACTGTATGAGATTCAAAGGGTG
GCCGTGCTATTCGTCGGGCTGAGCTTCGAAGAGGGTCGAAGGGAGGGAGA
AAGCAAGGCGCAGTTGCGGGAGGAAGAGATTGTAGCGGCCGCGTCGATTG
AACAGTTGAACGTCCTTCAGGCGAGCTTCACCCGGATACAATCG
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Coding sequence (CDS) from alignment at H-elongata_contig18857:4124..4767+

>mRNA_H-elongata_contig18857.5165.1 ID=mRNA_H-elongata_contig18857.5165.1|Name=mRNA_H-elongata_contig18857.5165.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=504bp|location=Sequence derived from alignment at H-elongata_contig18857:4124..4767+ (Himanthalia elongata Himel1 dioecious)
ATGCTTTCCAAGAACGTCCGGCGAGCTCTGAAGAGCTACTGTCCACAACC
CATAACGAAGGAGCTGATGCTTTCCAAGAACGTCCGGCGAGCTCTGAAGA
GCTACTGTCCACAACCCATAACGAAGGAGCTGATGGCGGAGAGAAAGGGT
CTACTGTATGAGATTCAAAGGGTGGCCGTGCTATTCGTCGGGCTGAGCTT
CGAAGAGGGTCGAAGGGAGGGAGAAAGCAAGGCGCAGTTGCGGGAGGAAG
AGATTGTAGCGGCCGCGTCGATTGAACAGTTGAACGTCCTTCAGGCGAGC
TTCACCCGGATACAATCGATGGCGGAGAGAAAGGGTCTACTGTATGAGAT
TCAAAGGGTGGCCGTGCTATTCGTCGGGCTGAGCTTCGAAGAGGGTCGAA
GGGAGGGAGAAAGCAAGGCGCAGTTGCGGGAGGAAGAGATTGTAGCGGCC
GCGTCGATTGAACAGTTGAACGTCCTTCAGGCGAGCTTCACCCGGATACA
ATCG
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