mRNA_H-elongata_contig18829.5149.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18829.5149.1
Unique NamemRNA_H-elongata_contig18829.5149.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18829.5149.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18829contigH-elongata_contig18829:3450..4918 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size525
Cds size378
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18829.5149.1prot_H-elongata_contig18829.5149.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18829 3450..4773 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930076.711375-CDS-H-elongata_contig18829:3449..36781622930076.711375-CDS-H-elongata_contig18829:3449..3678Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18829 3450..3678 +
1691679271.726714-CDS-H-elongata_contig18829:3449..36781691679271.726714-CDS-H-elongata_contig18829:3449..3678Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18829 3450..3678 +
1622930076.72905-CDS-H-elongata_contig18829:4624..47731622930076.72905-CDS-H-elongata_contig18829:4624..4773Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18829 4625..4773 +
1691679271.7372293-CDS-H-elongata_contig18829:4624..47731691679271.7372293-CDS-H-elongata_contig18829:4624..4773Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18829 4625..4773 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930076.745085-UTR-H-elongata_contig18829:4773..49181622930076.745085-UTR-H-elongata_contig18829:4773..4918Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18829 4774..4918 +
1691679271.7483346-UTR-H-elongata_contig18829:4773..49181691679271.7483346-UTR-H-elongata_contig18829:4773..4918Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18829 4774..4918 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18829.5149.1

>prot_H-elongata_contig18829.5149.1 ID=prot_H-elongata_contig18829.5149.1|Name=mRNA_H-elongata_contig18829.5149.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=126bp
RLRLWYTTVRNKGKRVYYCSELFGTKEEAEAAKVEWRRSLEERSPVARHR
TGTRSPGDGGGTSGLGSKRPAEGNPEEKAGKQRKQLLETALLLIAIVPCA
SGRRADETSREKTGLLISKLQKALL*
back to top

mRNA from alignment at H-elongata_contig18829:3450..4918+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18829.5149.1 ID=mRNA_H-elongata_contig18829.5149.1|Name=mRNA_H-elongata_contig18829.5149.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1469bp|location=Sequence derived from alignment at H-elongata_contig18829:3450..4918+ (Himanthalia elongata Himel1 dioecious)
CGGCTGCGACTTTGGTATACTACTGTCCGGAATAAGGGCAAAAGGGTATA
CTACTGCTCGGAGTTGTTTGGCACAAAGGAGGAAGCTGAAGCAGCCAAAG
TCGAGTGGCGGCGGAGCCTTGAAGAGCGCAGCCCAGTCGCGCGCCACCGT
ACGGGCACACGTTCACCTGGAGATGGTGGAGGCACCTCCGGTCTGGGGTC
CAAAAGGCCAGCTGAAGGCAACCCAGAAGGCGAGTACTTTCTCGTTTTGA
TGCTGTTATCTCCAATTTTGAATTTTAATTTTGAATTTTGAATTTTTAAA
AAACTTGAACCTCATTCCAACCCTCCGAACATCCACACCTTCTTAAGCGC
CGTGAGAGGTACCATCCGGGGGACCAACTATCGTCGGGTTCGAATGTGTA
CATTAATTACTGCCATTGAGAGCACAAATTTATTAACAAATCACCCGAAT
GAAGGCTATTGAGAGCACAGCTGGTGTAGATTTCCTTTTCGACGTTCGAC
GTTGTTGCTCGTCACTATATACGGTATTATTGCGAGTGTCAAAACAATAT
CTCTCCAACATCATCACTCACTGCTGTTTGTGCGGTCGTTTGCGCTGCCT
GTCATGCTGTTTGTACCGTCCATTGAGCCGTACTCCTCTTTGTGCTGCTG
TTCGCAATCTTTCTACTCTTCTTGTTTTTGTACTTACTGCTGCACGCATG
CTTTGCCATGCATGATGGTATACCAGGCACTTTTATTAATTAATGTTATA
CCGTGGTACTGCTCCTTATTAATTACATCGACGGTGCTAGTACTGCTGTA
GAGAACCCTATTTATTTGTCGTTTGCTTCACCACGAAACAGAGGTACGAG
ATAAATATTTCAGTTGCGCATGATGCATGTTATTATTATGTCGCCGACCG
GTTTTCCATTGTCCAATCACATTCTCCCTATCATTGTCCAATCACATTCA
TTATTTCTATCATGTGTACGATGATGACAGATGGAACATAATCTTGCAAC
AACAGCAGCATAAATCAGCTCAACTGTGTACAGTACAAGAGAAGGCGCTC
AAAAAAGACCCACCGCAAACTCACTGACGTCACCCGTGCGAAGTGGAAGG
AGTCTTGACGTCAGATGCTGACGGAACGAGAGAGAGAAAAAGCGGTGCCT
ACAGCGCGGTTGGAACAAGAGGGAGAAAAGGCTGGCAAACAACGCAAACA
ACTTCTCGAAACGGCACTACTATTAATAGCAATAGTACCTTGCGCGTCGG
GTAGACGAGCTGACGAAACGAGTCGAGAGAAGACTGGACTGCTCATCTCC
AAACTGCAAAAGGCACTGCTTTGAAATATCCACGCTTTGCTGTACGTCGA
GGACTTTCGGAGACACAGCACTTAGTTGAAGCTCAAGCGAACATAATTGA
GCGTTAGATATCTGAGGCAAAGAGCAACCGGTTGCGGGTCCAGGCAATAG
CGATACTGGTAGTACTGAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig18829:3450..4918+

>mRNA_H-elongata_contig18829.5149.1 ID=mRNA_H-elongata_contig18829.5149.1|Name=mRNA_H-elongata_contig18829.5149.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=756bp|location=Sequence derived from alignment at H-elongata_contig18829:3450..4918+ (Himanthalia elongata Himel1 dioecious)
CGGCTGCGACTTTGGTATACTACTGTCCGGAATAAGGGCAAAAGGGTATA
CTACTGCTCGGAGTTGTTTGGCACAAAGGAGGAAGCTGAAGCAGCCAAAG
TCGAGTGGCGGCGGAGCCTTGAAGAGCGCAGCCCAGTCGCGCGCCACCGT
ACGGGCACACGTTCACCTGGAGATGGTGGAGGCACCTCCGGTCTGGGGTC
CAAAAGGCCAGCTGAAGGCAACCCAGAAGCGGCTGCGACTTTGGTATACT
ACTGTCCGGAATAAGGGCAAAAGGGTATACTACTGCTCGGAGTTGTTTGG
CACAAAGGAGGAAGCTGAAGCAGCCAAAGTCGAGTGGCGGCGGAGCCTTG
AAGAGCGCAGCCCAGTCGCGCGCCACCGTACGGGCACACGTTCACCTGGA
GATGGTGGAGGCACCTCCGGTCTGGGGTCCAAAAGGCCAGCTGAAGGCAA
CCCAGAAGAAAAGGCTGGCAAACAACGCAAACAACTTCTCGAAACGGCAC
TACTATTAATAGCAATAGTACCTTGCGCGTCGGGTAGACGAGCTGACGAA
ACGAGTCGAGAGAAGACTGGACTGCTCATCTCCAAACTGCAAAAGGCACT
GCTTTGAAAAAGGCTGGCAAACAACGCAAACAACTTCTCGAAACGGCACT
ACTATTAATAGCAATAGTACCTTGCGCGTCGGGTAGACGAGCTGACGAAA
CGAGTCGAGAGAAGACTGGACTGCTCATCTCCAAACTGCAAAAGGCACTG
CTTTGA
back to top