mRNA_H-elongata_contig187316.5108.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig187316.5108.1
Unique NamemRNA_H-elongata_contig187316.5108.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig187316.5108.1 vs. uniprot
Match: T1LVS5_TRIUA (Uncharacterized protein n=1 Tax=Triticum urartu TaxID=4572 RepID=T1LVS5_TRIUA)

HSP 1 Score: 55.5 bits (132), Expect = 5.090e-8
Identity = 25/70 (35.71%), Postives = 43/70 (61.43%), Query Frame = 1 
Query:    7 NRCTSSSLDSDTSPYELWYGRRPTLDSIPPFGTVGYLRQLKPGHKLAPRGASCIMLGLAPDCLRDTFRVR 216
            NR  S S++  T+PYELW+G++P L  +  +G   Y+++L+P  KL P+   C+ +G   + +  TF +R
Sbjct:    5 NRAPSKSVE--TTPYELWFGKKPKLSFLKVWGCEAYVKKLQP-EKLEPKSEKCVFIGYPKETIGYTFYLR 71
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BLAST of mRNA_H-elongata_contig187316.5108.1 vs. uniprot
Match: UPI00115E8C8E (hypothetical protein n=1 Tax=Klebsiella pneumoniae TaxID=573 RepID=UPI00115E8C8E)

HSP 1 Score: 56.2 bits (134), Expect = 7.520e-8
Identity = 26/70 (37.14%), Postives = 43/70 (61.43%), Query Frame = 1 
Query:    7 NRCTSSSLDSDTSPYELWYGRRPTLDSIPPFGTVGYLRQLKPGHKLAPRGASCIMLGLAPDCLRDTFRVR 216
            NR  S S++  T+PYELWYG+RP L  +  +G   Y+++L+P  KL P+   C+ +G   + +  TF ++
Sbjct:   24 NRAPSKSVE--TTPYELWYGKRPKLSFLKVWGCDAYVKKLQP-EKLEPKAEKCVFIGYPKETVGYTFYLK 90
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BLAST of mRNA_H-elongata_contig187316.5108.1 vs. uniprot
Match: UPI0012D47DD2 (hypothetical protein n=1 Tax=Levilactobacillus brevis TaxID=1580 RepID=UPI0012D47DD2)

HSP 1 Score: 56.6 bits (135), Expect = 9.520e-8
Identity = 27/70 (38.57%), Postives = 43/70 (61.43%), Query Frame = 1 
Query:    7 NRCTSSSLDSDTSPYELWYGRRPTLDSIPPFGTVGYLRQLKPGHKLAPRGASCIMLGLAPDCLRDTFRVR 216
            NR  S S++  T+PYELWYG+RP L  +  +G   Y+++L+P  KL P+   CI +G   + +  TF ++
Sbjct:   32 NRAPSKSVE--TTPYELWYGKRPKLSFLKVWGCDAYVKKLQP-EKLEPKAEKCIFIGYPKETVGYTFYLK 98
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BLAST of mRNA_H-elongata_contig187316.5108.1 vs. uniprot
Match: A0A8I6XT42_HORVV (Uncharacterized protein n=6 Tax=cellular organisms TaxID=131567 RepID=A0A8I6XT42_HORVV)

HSP 1 Score: 56.6 bits (135), Expect = 1.280e-7
Identity = 27/70 (38.57%), Postives = 43/70 (61.43%), Query Frame = 1 
Query:    7 NRCTSSSLDSDTSPYELWYGRRPTLDSIPPFGTVGYLRQLKPGHKLAPRGASCIMLGLAPDCLRDTFRVR 216
            NR  S S++  T+PYELWYG+RP L  +  +G   Y+++L+P  KL P+   CI +G   + +  TF ++
Sbjct:  536 NRAPSKSVE--TTPYELWYGKRPKLSFLKVWGCDAYVKKLQP-EKLEPKAKKCIFIGYPKETVGYTFYLK 602
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BLAST of mRNA_H-elongata_contig187316.5108.1 vs. uniprot
Match: UPI00136F9A8D (hypothetical protein n=1 Tax=Ligilactobacillus salivarius TaxID=1624 RepID=UPI00136F9A8D)

HSP 1 Score: 56.2 bits (134), Expect = 1.700e-7
Identity = 26/70 (37.14%), Postives = 43/70 (61.43%), Query Frame = 1 
Query:    7 NRCTSSSLDSDTSPYELWYGRRPTLDSIPPFGTVGYLRQLKPGHKLAPRGASCIMLGLAPDCLRDTFRVR 216
            NR  S S++  T+PYELWYG+RP L  +  +G   Y+++L+P  KL P+   C+ +G   + +  TF ++
Sbjct:   24 NRAPSKSVE--TTPYELWYGKRPKLSFLKVWGCDAYVKKLQP-EKLEPKAEKCVFIGYPKETVGYTFYLK 90
[Close]
BLAST of mRNA_H-elongata_contig187316.5108.1 vs. uniprot
Match: UPI000F104716 (DDE-type integrase/transposase/recombinase n=1 Tax=Klebsiella pneumoniae TaxID=573 RepID=UPI000F104716)

HSP 1 Score: 55.1 bits (131), Expect = 4.410e-7
Identity = 25/70 (35.71%), Postives = 43/70 (61.43%), Query Frame = 1 
Query:    7 NRCTSSSLDSDTSPYELWYGRRPTLDSIPPFGTVGYLRQLKPGHKLAPRGASCIMLGLAPDCLRDTFRVR 216
            NR  S S++  T+PYELW+G++P L  +  +G   Y+++L+P  KL P+   C+ +G   + +  TF +R
Sbjct:  514 NRAPSKSVE--TTPYELWFGKKPKLSFLKVWGCDAYVKKLQP-EKLEPKAEKCVFIGYPKETIGYTFYLR 580
[Close]
BLAST of mRNA_H-elongata_contig187316.5108.1 vs. uniprot
Match: UPI002025788D (hypothetical protein n=2 Tax=Proteus mirabilis TaxID=584 RepID=UPI002025788D)

HSP 1 Score: 55.1 bits (131), Expect = 4.420e-7
Identity = 25/70 (35.71%), Postives = 43/70 (61.43%), Query Frame = 1 
Query:    7 NRCTSSSLDSDTSPYELWYGRRPTLDSIPPFGTVGYLRQLKPGHKLAPRGASCIMLGLAPDCLRDTFRVR 216
            NR  S S++  T+PYELW+G++P L  +  +G   Y+++L+P  KL P+   C+ +G   + +  TF +R
Sbjct:   24 NRAPSKSVE--TTPYELWFGKKPKLSFLKVWGCDAYVKKLQP-EKLEPKSEKCVFIGYPKETIGYTFYLR 90
[Close]
BLAST of mRNA_H-elongata_contig187316.5108.1 vs. uniprot
Match: UPI00202469D1 (DDE-type integrase/transposase/recombinase n=3 Tax=Gammaproteobacteria TaxID=1236 RepID=UPI00202469D1)

HSP 1 Score: 55.1 bits (131), Expect = 4.460e-7
Identity = 25/70 (35.71%), Postives = 43/70 (61.43%), Query Frame = 1 
Query:    7 NRCTSSSLDSDTSPYELWYGRRPTLDSIPPFGTVGYLRQLKPGHKLAPRGASCIMLGLAPDCLRDTFRVR 216
            NR  S S++  T+PYELW+G++P L  +  +G   Y+++L+P  KL P+   C+ +G   + +  TF +R
Sbjct:  308 NRAPSKSVE--TTPYELWFGKKPKLSFLKVWGCDAYVKKLQP-EKLEPKSEKCVFIGYPKETIGYTFYLR 374
[Close]
BLAST of mRNA_H-elongata_contig187316.5108.1 vs. uniprot
Match: M7ZMP1_TRIUA (Uncharacterized protein n=2 Tax=Triticum TaxID=4564 RepID=M7ZMP1_TRIUA)

HSP 1 Score: 54.7 bits (130), Expect = 5.900e-7
Identity = 25/70 (35.71%), Postives = 43/70 (61.43%), Query Frame = 1 
Query:    7 NRCTSSSLDSDTSPYELWYGRRPTLDSIPPFGTVGYLRQLKPGHKLAPRGASCIMLGLAPDCLRDTFRVR 216
            NR  S S++  T+PYELW+G++P L  +  +G   Y+++L+P  KL P+   C+ +G   + +  TF +R
Sbjct:   35 NRAPSKSVE--TTPYELWFGKKPKLSFLKVWGCDAYVKKLQP-EKLEPKSEKCVFIGYPKETVGYTFYLR 101
[Close]
BLAST of mRNA_H-elongata_contig187316.5108.1 vs. uniprot
Match: UPI0020242273 (hypothetical protein n=1 Tax=Proteus mirabilis TaxID=584 RepID=UPI0020242273)

HSP 1 Score: 52.8 bits (125), Expect = 1.150e-6
Identity = 21/60 (35.00%), Postives = 38/60 (63.33%), Query Frame = 1 
Query:   37 DTSPYELWYGRRPTLDSIPPFGTVGYLRQLKPGHKLAPRGASCIMLGLAPDCLRDTFRVR 216
            +T+PYELW+G++P L  +  +G   Y+++L+P  KL P+   C+ +G   + +  TF +R
Sbjct:    4 ETTPYELWFGKKPKLSFLKVWGCDAYVKKLQP-EKLEPKSEKCVFIGYPKETIGYTFYLR 62
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig187316.5108.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
T1LVS5_TRIUA5.090e-835.71Uncharacterized protein n=1 Tax=Triticum urartu Ta... [more]
UPI00115E8C8E7.520e-837.14hypothetical protein n=1 Tax=Klebsiella pneumoniae... [more]
UPI0012D47DD29.520e-838.57hypothetical protein n=1 Tax=Levilactobacillus bre... [more]
A0A8I6XT42_HORVV1.280e-738.57Uncharacterized protein n=6 Tax=cellular organisms... [more]
UPI00136F9A8D1.700e-737.14hypothetical protein n=1 Tax=Ligilactobacillus sal... [more]
UPI000F1047164.410e-735.71DDE-type integrase/transposase/recombinase n=1 Tax... [more]
UPI002025788D4.420e-735.71hypothetical protein n=2 Tax=Proteus mirabilis Tax... [more]
UPI00202469D14.460e-735.71DDE-type integrase/transposase/recombinase n=3 Tax... [more]
M7ZMP1_TRIUA5.900e-735.71Uncharacterized protein n=2 Tax=Triticum TaxID=456... [more]
UPI00202422731.150e-635.00hypothetical protein n=1 Tax=Proteus mirabilis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig187316contigH-elongata_contig187316:886..1101 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size216
Cds size216
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930070.6211555-CDS-H-elongata_contig187316:885..11011622930070.6211555-CDS-H-elongata_contig187316:885..1101Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig187316 886..1101 -
1691679269.6019137-CDS-H-elongata_contig187316:885..11011691679269.6019137-CDS-H-elongata_contig187316:885..1101Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig187316 886..1101 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig187316.5108.1prot_H-elongata_contig187316.5108.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig187316 886..1101 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig187316.5108.1

>prot_H-elongata_contig187316.5108.1 ID=prot_H-elongata_contig187316.5108.1|Name=mRNA_H-elongata_contig187316.5108.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=72bp
MRNRCTSSSLDSDTSPYELWYGRRPTLDSIPPFGTVGYLRQLKPGHKLAP
RGASCIMLGLAPDCLRDTFRVR
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mRNA from alignment at H-elongata_contig187316:886..1101-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig187316.5108.1 ID=mRNA_H-elongata_contig187316.5108.1|Name=mRNA_H-elongata_contig187316.5108.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=216bp|location=Sequence derived from alignment at H-elongata_contig187316:886..1101- (Himanthalia elongata Himel1 dioecious)
ATGCGAAACCGATGCACCTCCTCCTCCCTCGACAGTGACACCTCGCCATA
TGAGCTTTGGTACGGCCGACGTCCGACATTGGACAGCATCCCCCCGTTCG
GGACCGTGGGATATCTACGACAGTTGAAGCCGGGACACAAACTAGCCCCC
CGCGGGGCGAGCTGCATCATGCTCGGGCTGGCCCCCGACTGCCTGCGGGA
CACTTTCCGGGTGCGT
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Coding sequence (CDS) from alignment at H-elongata_contig187316:886..1101-

>mRNA_H-elongata_contig187316.5108.1 ID=mRNA_H-elongata_contig187316.5108.1|Name=mRNA_H-elongata_contig187316.5108.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=432bp|location=Sequence derived from alignment at H-elongata_contig187316:886..1101- (Himanthalia elongata Himel1 dioecious)
ATGCGAAACCGATGCACCTCCTCCTCCCTCGACAGTGACACCTCGCCATA
TGAGCTTTGGTACGGCCGACGTCCGACATTGGACAGCATCCCCCCGTTCG
GGACCGTGGGATATCTACGACAGTTGAAGCCGGGACACAAACTAGCCCCC
CGCGGGGCGAGCTGCATCATGCTCGGGCTGGCCCCCGACTGCCTGCGGGA
CACTTTCCGGGTGCGTATGCGAAACCGATGCACCTCCTCCTCCCTCGACA
GTGACACCTCGCCATATGAGCTTTGGTACGGCCGACGTCCGACATTGGAC
AGCATCCCCCCGTTCGGGACCGTGGGATATCTACGACAGTTGAAGCCGGG
ACACAAACTAGCCCCCCGCGGGGCGAGCTGCATCATGCTCGGGCTGGCCC
CCGACTGCCTGCGGGACACTTTCCGGGTGCGT
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