mRNA_H-elongata_contig186152.5058.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig186152.5058.1
Unique NamemRNA_H-elongata_contig186152.5058.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig186152.5058.1 vs. uniprot
Match: A0A6H5J7G6_9PHAE (MFS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J7G6_9PHAE)

HSP 1 Score: 209 bits (531), Expect = 6.450e-63
Identity = 103/118 (87.29%), Postives = 111/118 (94.07%), Query Frame = 1
Query:    1 SLLSNLVYPAISSLISRSVVASKQGEVLGAINGVRALTEGFGPLVFSCLFWYTENSFLPGCPYLIAAVVCLGALVLSFELPDSIDDDDSGLLLGTFGKDLPEGGAGVEEMVGLLASDG 354
            SLLSNLVYP+ISSLISRSV  SKQGEVLGAINGVRALTEGFGPL+FSCLFWYTE++ LPGCPYLIAAVVCL AL+LS+E+PD+IDDDDSGLLLGTFGKDLPEGG G EEMV LLASDG
Sbjct:  352 SLLSNLVYPSISSLISRSVATSKQGEVLGAINGVRALTEGFGPLLFSCLFWYTEDTLLPGCPYLIAAVVCLAALLLSYEIPDAIDDDDSGLLLGTFGKDLPEGGEGAEEMVALLASDG 469          
BLAST of mRNA_H-elongata_contig186152.5058.1 vs. uniprot
Match: A0A836CJ60_9STRA (Hippocampus abundant transcript 1 protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ60_9STRA)

HSP 1 Score: 124 bits (311), Expect = 7.160e-31
Identity = 74/122 (60.66%), Postives = 86/122 (70.49%), Query Frame = 1
Query:    1 SLLSNLVYPAISSLISRSVVASKQGEVLGAINGVRALTEGFGPLVFSCLFWYTENSFLPGCPYLIAAVVCLGALVLSFELPDSIDDDDSGLLLGTFGKDLPEGGAGVEEMVGLLASDGSRSD 366
            SLLSNLVYPA+SSL+SRSV  + QGEVLG INGVRALTEGFGPL+F  L    E + LPG PYLIA  V +GALV SF +PD  DD    L +GTFG D  +G A VE +  LLA+D +  D
Sbjct:  348 SLLSNLVYPAMSSLVSRSVSTAAQGEVLGTINGVRALTEGFGPLIFGALMSQFEGTLLPGAPYLIAGGVSVGALVYSFGIPDETDD---ALCVGTFGADS-DGFAAVE-LQPLLAADDAADD 464          
BLAST of mRNA_H-elongata_contig186152.5058.1 vs. uniprot
Match: A0A6V3A0Z0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V3A0Z0_HETAK)

HSP 1 Score: 103 bits (258), Expect = 1.890e-23
Identity = 58/115 (50.43%), Postives = 73/115 (63.48%), Query Frame = 1
Query:    1 SLLSNLVYPAISSLISRSVVASKQGEVLGAINGVRALTEGFGPLVFSCLFWYTENSFLPGCPYLIAAVVCLGALVLSFELPDSIDDDDSGLLLGTFGKDLPEGGAGVEEMVGLLA 345
            S+ SNLVYP++SSL+SR V A +QGE LGA+NGV+ALTEGFGPL+F  L    E + +PG PYL+AA    GALV SF LP+  D        G +     E  A   E+V LL+
Sbjct:  339 SVFSNLVYPSLSSLVSRGVGAGRQGEALGALNGVKALTEGFGPLLFGHLLAAFEGTVVPGAPYLVAAAFAAGALVTSFALPEDPD-----AAAGAWAARHTEDAADALELVNLLS 448          
BLAST of mRNA_H-elongata_contig186152.5058.1 vs. uniprot
Match: A0A4D9D9X9_9STRA (MFS domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D9X9_9STRA)

HSP 1 Score: 102 bits (253), Expect = 1.420e-22
Identity = 56/118 (47.46%), Postives = 81/118 (68.64%), Query Frame = 1
Query:    1 SLLSNLVYPAISSLISRSVVASKQGEVLGAINGVRALTEGFGPLVFSCLFWYTENSFLPGCPYLIAAVVCLGALVLSFELPDSIDDDDSGLLLGTFGKDLPEGGAGVEEMVGLLASDG 354
            S L+NLVYPA+SSL+SRSV  SKQGE LGA+NG+RALTEGFGPL+F  L +  +++  PG PYL+A+   + AL+ + +LP   +       +  + K + +  AG++E VGLL+ +G
Sbjct:  378 STLANLVYPAVSSLVSRSVPPSKQGEALGAMNGIRALTEGFGPLLFGSLMFLCQDTRAPGAPYLLASACSVAALLQTNKLPSEAE-------IWEYEKRVSKQ-AGLQEAVGLLSEEG 487          
BLAST of mRNA_H-elongata_contig186152.5058.1 vs. uniprot
Match: A0A7S2XVJ1_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVJ1_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 3.310e-21
Identity = 47/82 (57.32%), Postives = 63/82 (76.83%), Query Frame = 1
Query:    1 SLLSNLVYPAISSLISRSVVASKQGEVLGAINGVRALTEGFGPLVFSCLFWYTENSFLPGCPYLIAAVVCLGALVLSFELPD 246
            S+LSNLVYPA+SS++SR V  ++ G  LGA+NGV+ALTEGFGPL F  L +  E++ LPG PYLIAA+  +GAL+ S+ L +
Sbjct:  141 SVLSNLVYPALSSMVSRGVGPNQVGVALGAMNGVKALTEGFGPLCFGALLFQFEDTRLPGAPYLIAAMFAIGALLASYSLKE 222          
BLAST of mRNA_H-elongata_contig186152.5058.1 vs. uniprot
Match: A0A6U3VK78_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3VK78_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 7.670e-21
Identity = 47/88 (53.41%), Postives = 60/88 (68.18%), Query Frame = 1
Query:    1 SLLSNLVYPAISSLISRSVVASKQGEVLGAINGVRALTEGFGPLVFSCLFWYTENSFLPGCPYLIAAVVCLGALVLSFELPDSIDDDD 264
            S LS+LVYP+++SL+S +V   K GE LGA+NG+++LTEGFGPL F  L   +E S LPG PYL+AA+V  GA   S  LP   D  D
Sbjct:   38 STLSHLVYPSLASLVSTTVPPEKVGEALGAVNGIKSLTEGFGPLCFGVLMTLSEESVLPGWPYLLAALVAYGAYKRSLLLPTEDDSKD 125          
BLAST of mRNA_H-elongata_contig186152.5058.1 vs. uniprot
Match: A0A7S2SCZ5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SCZ5_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 1.470e-20
Identity = 45/81 (55.56%), Postives = 58/81 (71.60%), Query Frame = 1
Query:    1 SLLSNLVYPAISSLISRSVVASKQGEVLGAINGVRALTEGFGPLVFSCLFWYTENSFLPGCPYLIAAVVCLGALVLSFELP 243
            SL SNLVYP++ SL+SR+V A KQG   G+INGV+ALTEGFGPL F  L    E++ LPG PYLI   + L A+ ++F +P
Sbjct:   15 SLFSNLVYPSLCSLVSRNVPADKQGAAQGSINGVKALTEGFGPLAFGLLMNVFEDTALPGAPYLIGGFITLLAVAVTFRIP 95          
BLAST of mRNA_H-elongata_contig186152.5058.1 vs. uniprot
Match: A0A8J2S4T1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S4T1_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 1.670e-20
Identity = 56/117 (47.86%), Postives = 71/117 (60.68%), Query Frame = 1
Query:    1 SLLSNLVYPAISSLISRSVVASKQGEVLGAINGVRALTEGFGPLVFSCLFWYTENSFLPGCPYLIAAVVCLGALVLSFELPDSIDDDDSGLLLGTFGKDLPEGGAGVEEMVGLLASD 351
            SL+SNLVYPA+S+L++R   A++ GE LGA+NGV+ALTEG GPL F  +    E + LPG PYL  A + L A  LS  LPD   D+D G                 EE+VGLLA+D
Sbjct:  314 SLVSNLVYPALSALVARRAEATEVGEALGALNGVKALTEGVGPLGFGLVMVEFERTALPGLPYLACAALALLAWALSHRLPDLQKDEDEG----------------DEELVGLLAAD 414          
BLAST of mRNA_H-elongata_contig186152.5058.1 vs. uniprot
Match: A0A7S1D8G3_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D8G3_CYCTE)

HSP 1 Score: 92.4 bits (228), Expect = 4.070e-20
Identity = 47/87 (54.02%), Postives = 61/87 (70.11%), Query Frame = 1
Query:    1 SLLSNLVYPAISSLISRSVVASKQGEVLGAINGVRALTEGFGPLVFSCLFWYTENSFLPGCPYLIAAVVCLGALVLSFELPDSIDDD 261
            S++ NLVYP+++SL+S SV     GE LGA+NG++ALTEG GPLVF  L   +ENS LPG PYL+AAV+   A   +  LPD  +DD
Sbjct:   78 SMVGNLVYPSLTSLVSASVEPEALGEALGAVNGIKALTEGIGPLVFGSLMTLSENSSLPGSPYLLAAVLVFFAYRYADRLPDVQNDD 164          
BLAST of mRNA_H-elongata_contig186152.5058.1 vs. uniprot
Match: A0A836CPP9_9STRA (Major facilitator superfamily domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPP9_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 8.050e-20
Identity = 49/72 (68.06%), Postives = 55/72 (76.39%), Query Frame = 1
Query:    7 LSNLVYPAISSLISRSVVASKQGEVLGAINGVRALTEGFGPLVFSCLFWYTENSFLPGCPYLIAAVVCLGAL 222
            LSNL YP++SSL+S+SV    QGEVLG INGVRALTEGFGPLVF  L  Y E S LPG PYLIA+ V + AL
Sbjct:  413 LSNLFYPSMSSLVSKSVSLEAQGEVLGTINGVRALTEGFGPLVFGALMSYFETSALPGAPYLIASAVGVAAL 484          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig186152.5058.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J7G6_9PHAE6.450e-6387.29MFS domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A836CJ60_9STRA7.160e-3160.66Hippocampus abundant transcript 1 protein (Fragmen... [more]
A0A6V3A0Z0_HETAK1.890e-2350.43Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A4D9D9X9_9STRA1.420e-2247.46MFS domain-containing protein n=2 Tax=Monodopsidac... [more]
A0A7S2XVJ1_9STRA3.310e-2157.32Hypothetical protein n=2 Tax=Fibrocapsa japonica T... [more]
A0A6U3VK78_9STRA7.670e-2153.41Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2SCZ5_9STRA1.470e-2055.56Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A8J2S4T1_9STRA1.670e-2047.86Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S1D8G3_CYCTE4.070e-2054.02Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A836CPP9_9STRA8.050e-2068.06Major facilitator superfamily domain-containing pr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig186152contigH-elongata_contig186152:82..492 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score211.1
Seed ortholog evalue3.3e-52
Seed eggNOG ortholog2880.D7FX29
Preferred nameHIAT1
KEGG koko:K10393
GOsGO:0003674,GO:0005215,GO:0006810,GO:0008150,GO:0051179,GO:0051234,GO:0055085
EggNOG free text desc.folate import across plasma membrane
EggNOG OGsKOG2816@1,KOG2816@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04812
Hectar predicted targeting categoryother localisation
Exons1
Model size411
Cds size411
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930064.9865115-CDS-H-elongata_contig186152:81..4921622930064.9865115-CDS-H-elongata_contig186152:81..492Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig186152 82..492 +
1691679267.2994745-CDS-H-elongata_contig186152:81..4921691679267.2994745-CDS-H-elongata_contig186152:81..492Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig186152 82..492 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig186152.5058.1prot_H-elongata_contig186152.5058.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig186152 82..492 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig186152.5058.1

>prot_H-elongata_contig186152.5058.1 ID=prot_H-elongata_contig186152.5058.1|Name=mRNA_H-elongata_contig186152.5058.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=137bp
SLLSNLVYPAISSLISRSVVASKQGEVLGAINGVRALTEGFGPLVFSCLF
WYTENSFLPGCPYLIAAVVCLGALVLSFELPDSIDDDDSGLLLGTFGKDL
PEGGAGVEEMVGLLASDGSRSDDDDACRGEEDDRAEE
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mRNA from alignment at H-elongata_contig186152:82..492+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig186152.5058.1 ID=mRNA_H-elongata_contig186152.5058.1|Name=mRNA_H-elongata_contig186152.5058.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=411bp|location=Sequence derived from alignment at H-elongata_contig186152:82..492+ (Himanthalia elongata Himel1 dioecious)
TCCCTGCTCAGCAACCTCGTCTACCCGGCAATATCTAGCCTAATTTCCCG GTCGGTAGTGGCTTCCAAGCAGGGCGAGGTGCTCGGGGCGATCAACGGCG TCCGCGCCCTGACGGAGGGCTTCGGGCCCCTGGTGTTCTCCTGTCTCTTT TGGTACACTGAGAACAGCTTCCTCCCCGGCTGCCCTTATCTCATCGCGGC CGTGGTGTGCCTGGGGGCCCTTGTCCTGTCGTTCGAGCTCCCGGACTCAA TAGACGACGACGACTCGGGCCTGCTGCTGGGAACCTTTGGAAAGGACCTA CCCGAGGGGGGCGCCGGGGTGGAGGAGATGGTGGGCCTGCTGGCGTCAGA TGGATCTCGCAGCGACGATGATGATGCTTGTCGGGGGGAGGAGGATGATC GAGCGGAGGAG
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Coding sequence (CDS) from alignment at H-elongata_contig186152:82..492+

>mRNA_H-elongata_contig186152.5058.1 ID=mRNA_H-elongata_contig186152.5058.1|Name=mRNA_H-elongata_contig186152.5058.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=822bp|location=Sequence derived from alignment at H-elongata_contig186152:82..492+ (Himanthalia elongata Himel1 dioecious)
TCCCTGCTCAGCAACCTCGTCTACCCGGCAATATCTAGCCTAATTTCCCG
GTCGGTAGTGGCTTCCAAGCAGGGCGAGGTGCTCGGGGCGATCAACGGCG
TCCGCGCCCTGACGGAGGGCTTCGGGCCCCTGGTGTTCTCCTGTCTCTTT
TGGTACACTGAGAACAGCTTCCTCCCCGGCTGCCCTTATCTCATCGCGGC
CGTGGTGTGCCTGGGGGCCCTTGTCCTGTCGTTCGAGCTCCCGGACTCAA
TAGACGACGACGACTCGGGCCTGCTGCTGGGAACCTTTGGAAAGGACCTA
CCCGAGGGGGGCGCCGGGGTGGAGGAGATGGTGGGCCTGCTGGCGTCAGA
TGGATCTCGCAGCGACGATGATGATGCTTGTCGGGGGGAGGAGGATGATC
GAGCGGAGGAGTCCCTGCTCAGCAACCTCGTCTACCCGGCAATATCTAGC
CTAATTTCCCGGTCGGTAGTGGCTTCCAAGCAGGGCGAGGTGCTCGGGGC
GATCAACGGCGTCCGCGCCCTGACGGAGGGCTTCGGGCCCCTGGTGTTCT
CCTGTCTCTTTTGGTACACTGAGAACAGCTTCCTCCCCGGCTGCCCTTAT
CTCATCGCGGCCGTGGTGTGCCTGGGGGCCCTTGTCCTGTCGTTCGAGCT
CCCGGACTCAATAGACGACGACGACTCGGGCCTGCTGCTGGGAACCTTTG
GAAAGGACCTACCCGAGGGGGGCGCCGGGGTGGAGGAGATGGTGGGCCTG
CTGGCGTCAGATGGATCTCGCAGCGACGATGATGATGCTTGTCGGGGGGA
GGAGGATGATCGAGCGGAGGAG
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