mRNA_H-elongata_contig18570.5029.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig18570.5029.1 vs. uniprot
Match: D7FT75_ECTSI (Vacuolar protein 8 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT75_ECTSI) HSP 1 Score: 174 bits (440), Expect = 8.780e-45 Identity = 257/324 (79.32%), Postives = 265/324 (81.79%), Query Frame = 1
Query: 4 FTLARSLDVASQRYSTLALCNLSSGEHKARIVGEGAVRPLTFLARFXXXXXXXXXXXXXXXXXXXXXGNPSNKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSTKAAVMHEDGLPPLLALVNSSDDGDCARTAVYALGSLCESDEVKARLVELGAIESVVHRSSLGDIEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMMAVEAEPRHYAGLALLKLADNFENHIRIAEEGGIQALLRLGRARSTDDEVQYKAALTVGHLASNAVKML 975
F LARSLDVASQRYSTLALCNLSSGEHKAR XXXXXXXXXXXXXXXXXXXXXG P NKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX STK AVMHEDGL PLL LVNS DDGDC RTAVYALGSLCESD VKARL+ELGA+ +VV ++S GDIEV XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX MMAVEAEPRH LRLGRARSTD+E+QYKAALTVGHLASNAVK+L
Sbjct: 3417 FQLARSLDVASQRYSTLALCNLSSGEHKARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKPPNKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSTKTAVMHEDGLFPLLELVNS-DDGDCVRTAVYALGSLCESDPVKARLIELGAVVNVVGQASFGDIEVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSMMAVEAEPRHXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRLGRARSTDEELQYKAALTVGHLASNAVKLL 3739
BLAST of mRNA_H-elongata_contig18570.5029.1 vs. uniprot
Match: A0A7S2A1K7_9STRA (Vacuolar protein 8 n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2A1K7_9STRA) HSP 1 Score: 142 bits (359), Expect = 6.050e-37 Identity = 151/209 (72.25%), Postives = 174/209 (83.25%), Query Frame = 1
Query: 349 KAAVMHEDGLPPLLALVNSSDDGDCARTAVYALGSLCESDEVKARLVELGAIESVVHRSSLGDIEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMMAVEAEPRHYAGLALLKLADNFENHIRIAEEGGIQALLRLGRARSTDDEVQYKAALTVGHLASNAVKML 975
K V E G +L+L++S+D+ +C + +Y LGSL E+DE++ LVE+G+I+ +V + LG IE+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX MMA AE +HYAG+ALLKLADNFENHI IAEEGGIQALLRLGR+R TD+EVQYKAALTVGHLA+NAV L
Sbjct: 19 KMRVFRETGSKSILSLISSNDE-ECVHSGIYMLGSLAENDEIRGTLVEIGSIKWLVDKFKLGPIEIKRAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVSMMATNAESKHYAGMALLKLADNFENHITIAEEGGIQALLRLGRSRVTDEEVQYKAALTVGHLATNAVNQL 226
BLAST of mRNA_H-elongata_contig18570.5029.1 vs. uniprot
Match: A0A482RX95_9ARCH (Vacuolar protein 8 (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RX95_9ARCH) HSP 1 Score: 139 bits (349), Expect = 9.610e-33 Identity = 202/327 (61.77%), Postives = 232/327 (70.95%), Query Frame = 1
Query: 1 LFTLARSLDVASQRYSTLALCNLSSGEHKARIVGEGAVRPLTFLARFXXXXXXXXXXXXXXXXXXXXXGNPS-NKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSTKAAVMHEDGLPPLLALVNSSDDG-DCARTAVYALGSLCESDEVKARLVELGAIESVVHRSSLGDIEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMMAVEAEPRHYAGLALLKLADNFENHIRIAEEGGIQALLRLGRARSTDDEVQYKAALTVGHLASNAVKML 975
+ LA+SLD ASQRY+TL LCNL + + K ++ +G +RPL FL F G S +K XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ++ G D AVY LGS+CE ++VK R V+ I+ VV S GD+E+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX M++ +AEP+HYAGLALLKLADNFENH+RIAEEGGIQALLRLGR R+TDD++QYKAALT+G LA+NAVK+L
Sbjct: 1508 ILNLAKSLDSASQRYATLTLCNLCASQMKGLLLEQGVLRPLIFLMHFPDPEIQRYASLALAGVAL---GTKSVSKVQIVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNILQREHLGRDLLHAAVYCLGSICEHEDVKMRFVDSHGIQLVVRHLSTGDMEMKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVVRPLVTMLSSDAEPKHYAGLALLKLADNFENHLRIAEEGGIQALLRLGRTRTTDDQLQYKAALTLGQLATNAVKLL 1831
BLAST of mRNA_H-elongata_contig18570.5029.1 vs. uniprot
Match: A0A7S4T4K8_9STRA (Vacuolar protein 8 n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4T4K8_9STRA) HSP 1 Score: 137 bits (345), Expect = 2.800e-32 Identity = 224/325 (68.92%), Postives = 252/325 (77.54%), Query Frame = 1
Query: 1 LFTLARSLDVASQRYSTLALCNLSSGEHKARIVGEGAVRPLTFLARFXXXXXXXXXXXXXXXXXXXXXGNPSNKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSTKAAVMHEDGLPPLLALVNSSDDGDCARTAVYALGSLCESDEVKARLVELGAIESVVHRSSLGDIEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMMAVEAEPRHYAGLALLKLADNFENHIRIAEEGGIQALLRLGRARSTDDEVQYKAALTVGHLASNAVKML 975
LF L+RS D+A+QR ++LALCNLSS K +++ EG XXXXXXXXXXXXXXXXX GN +NKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX S+D+ +C + +Y LGSL E+DE++ LVE+G+I+ +V + LG IE+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX MMA AE +HYAG+ALLKLADNFENHI IAEEGGIQALLRLGR+R TD+EVQYKAALTVGHLA+NAV L
Sbjct: 632 LFKLSRSSDIATQRRASLALCNLSSNGDKLKLLEEGVXXXXXXXXXXXXXXXXXXXXXXXXXXXLG--GNITNKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSNDE-ECVHSGIYMLGSLAENDEIRGALVEIGSIKWLVDKFKLGPIEIKRAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVSMMATNAESKHYAGMALLKLADNFENHITIAEEGGIQALLRLGRSRVTDEEVQYKAALTVGHLATNAVNQL 953
BLAST of mRNA_H-elongata_contig18570.5029.1 vs. uniprot
Match: A0A7S2XVB4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVB4_9STRA) HSP 1 Score: 124 bits (310), Expect = 1.180e-31 Identity = 62/65 (95.38%), Postives = 64/65 (98.46%), Query Frame = 1
Query: 781 AEPRHYAGLALLKLADNFENHIRIAEEGGIQALLRLGRARSTDDEVQYKAALTVGHLASNAVKML 975
A PRHYAGLALLKLADNFENHIRIAEEGGIQALLRLGRARSTD+E+QYKAALTVGHLASNAVKML
Sbjct: 3 AVPRHYAGLALLKLADNFENHIRIAEEGGIQALLRLGRARSTDEELQYKAALTVGHLASNAVKML 67
BLAST of mRNA_H-elongata_contig18570.5029.1 vs. uniprot
Match: A0A7S2WWV0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WWV0_9STRA) HSP 1 Score: 123 bits (308), Expect = 2.540e-31 Identity = 60/70 (85.71%), Postives = 67/70 (95.71%), Query Frame = 1
Query: 766 MMAVEAEPRHYAGLALLKLADNFENHIRIAEEGGIQALLRLGRARSTDDEVQYKAALTVGHLASNAVKML 975
MMAV+AEPRHYAGLALLKLADNFENH+ IA+EGGIQALLRLGR R+TDDE+QYKAALTVG+LASNAV M+
Sbjct: 43 MMAVQAEPRHYAGLALLKLADNFENHVAIAKEGGIQALLRLGRTRTTDDELQYKAALTVGNLASNAVAMM 112
BLAST of mRNA_H-elongata_contig18570.5029.1 vs. uniprot
Match: A0A7S3NHP7_9STRA (Vacuolar protein 8 (Fragment) n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NHP7_9STRA) HSP 1 Score: 131 bits (330), Expect = 4.710e-31 Identity = 118/212 (55.66%), Postives = 141/212 (66.51%), Query Frame = 1
Query: 343 STKAAVMHEDGLPPLLALVNSSDDGDCARTAVYALGSLCESDEVKARLVELGAIESVVHRS-SLGDIEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMMAVEAEPRHYAGLALLKLADNFENHIRIAEEGGIQALLRLGRARSTDDEVQYKAALTVGHLASNAVKML 975
+T + E GLP L +L++ D DC +VYA+GSL E++E+K +LVEL I++VV S S D+E+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX M V+A P HYAGLALLKLA+NFENH+ IA+EGGIQALLRLGR RSTD E+QYKAALTV +LASN V ++
Sbjct: 192 ATMLGIAREHGLPALFSLLDPKQDNDCHFASVYAMGSLAENNEIKQQLVELDTIQTVVKSSTSRSDLELKRAAAYLFARLAENAELHLKLYENGAVDALVALASLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTVKAAPAHYAGLALLKLANNFENHVAIAQEGGIQALLRLGRERSTDHELQYKAALTVVNLASNVVNLM 403
BLAST of mRNA_H-elongata_contig18570.5029.1 vs. uniprot
Match: A0A7S2HQA5_9STRA (Vacuolar protein 8 (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HQA5_9STRA) HSP 1 Score: 119 bits (297), Expect = 1.250e-28 Identity = 57/70 (81.43%), Postives = 65/70 (92.86%), Query Frame = 1
Query: 766 MMAVEAEPRHYAGLALLKLADNFENHIRIAEEGGIQALLRLGRARSTDDEVQYKAALTVGHLASNAVKML 975
+MAV AEPRHYAGLALLKLADNF NH+ IA+EGGIQALLRLGR R+TDDE+QYKAALTVG+LASNA K++
Sbjct: 82 LMAVHAEPRHYAGLALLKLADNFSNHVAIAKEGGIQALLRLGRTRTTDDELQYKAALTVGNLASNAAKLM 151
BLAST of mRNA_H-elongata_contig18570.5029.1 vs. uniprot
Match: A0A8J2SEI2_9STRA (Vacuolar protein 8 n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SEI2_9STRA) HSP 1 Score: 127 bits (318), Expect = 1.270e-28 Identity = 224/320 (70.00%), Postives = 249/320 (77.81%), Query Frame = 1
Query: 16 RSLDVASQRYSTLALCNLSSGEHKARIVGEGAVRPLTFLARFXXXXXXXXXXXXXXXXXXXXXGNPSNKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSTKAAVMHEDGLPPLLALVNSSDDGDCARTAVYALGSLCESDEVKARLVELGAIESVVHRSSLGDIEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMMAVEAEPRHYAGLALLKLADNFENHIRIAEEGGIQALLRLGRARSTDDEVQYKAALTVGHLASNAVKML 975
RSLDVA QRY+TL+LCN+S GEHK XXXXXXXXXXXXXXXXXXXXX +NK XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX L+ S D+ +C Y LGSL E EV+A+LV+LG+I ++V ++E+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX MM+++AEPRHYAGLALLKLADNFENH+ IA+EGGIQALLRLGR R+TD+E+QYKAALTVG LASNAVKM+
Sbjct: 3448 RSLDVACQRYATLSLCNVSCGEHKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA--TNKERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLKSHDE-ECVFAGTYILGSLAEDAEVQAQLVDLGSIPALVAVVGDANLEIKRAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMMSIQAEPRHYAGLALLKLADNFENHVAIAQEGGIQALLRLGRERTTDEELQYKAALTVGTLASNAVKMM 3764
BLAST of mRNA_H-elongata_contig18570.5029.1 vs. uniprot
Match: A0A835Z6R1_9STRA (Vacuolar protein 8 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6R1_9STRA) HSP 1 Score: 125 bits (314), Expect = 4.270e-28 Identity = 217/327 (66.36%), Postives = 239/327 (73.09%), Query Frame = 1
Query: 1 LFTLARSLDVASQRYSTLALCNLSSGEH--KARIVGEGAVRPLTFLARFXXXXXXXXXXXXXXXXXXXXXGNPSNKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSTKAAVMHEDGLPPLLALVNSSDDGDCARTAVYALGSLCESDEVKARLVELGAIESVVHRSSLGDIEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMMAVEAEPRHYAGLALLKLADNFENHIRIAEEGGIQALLRLGRARSTDDEVQYKAALTVGHLASNAVKML 975
LF LARSLDV++QRY+TLALCNL++G K R+V EG XXXXXXXXXXXXXX G SN+XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +TK AVM ED E+DEV ARLVELG + ++ G + XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX MM+ AEPRHYAGLALLKLADNF NH+ IA EGGIQALLRLGR+R TD+E+QYKAAL+VGH+ASNAV++L
Sbjct: 3653 LFHLARSLDVSTQRYATLALCNLAAGPARLKLRVVAEGXXXXXXXXXXXXXXXXXXXXXXXXXGLSSSTVGGVSNRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALGTEPATKTAVMVEDXXXXXXXXXXXXXXXXXXXXXXXXXXXX-EADEVLARLVELGIVALAAAHAAAGPMASRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPLVSMMSTAAEPRHYAGLALLKLADNFNNHLAIANEGGIQALLRLGRSRETDEELQYKAALSVGHMASNAVRLL 3978 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18570.5029.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig18570.5029.1 >prot_H-elongata_contig18570.5029.1 ID=prot_H-elongata_contig18570.5029.1|Name=mRNA_H-elongata_contig18570.5029.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=325bp LFTLARSLDVASQRYSTLALCNLSSGEHKARIVGEGAVRPLTFLARFPDLback to top mRNA from alignment at H-elongata_contig18570:1738..2961- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig18570.5029.1 ID=mRNA_H-elongata_contig18570.5029.1|Name=mRNA_H-elongata_contig18570.5029.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1224bp|location=Sequence derived from alignment at H-elongata_contig18570:1738..2961- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig18570:1738..2961- >mRNA_H-elongata_contig18570.5029.1 ID=mRNA_H-elongata_contig18570.5029.1|Name=mRNA_H-elongata_contig18570.5029.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1950bp|location=Sequence derived from alignment at H-elongata_contig18570:1738..2961- (Himanthalia elongata Himel1 dioecious)back to top |