mRNA_H-elongata_contig18547.5017.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18547.5017.1
Unique NamemRNA_H-elongata_contig18547.5017.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig18547.5017.1 vs. uniprot
Match: D8LJZ9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJZ9_ECTSI)

HSP 1 Score: 159 bits (402), Expect = 1.380e-44
Identity = 79/112 (70.54%), Postives = 91/112 (81.25%), Query Frame = 1 
Query:  169 ATPKDMDYYSGLVGLQPGEEERLAKG--EVGTAKDYPINLPSYLLLLLATVACIAFVGSIFEVTGPNPELGYTPTYIIGTLAFPTFIFLFYSAIKKGQAEVEEDDARYRGGR 498
            A P+D+DYYSGL+G QPG ++  A G  E  T  DYPI LPSYLLL+LATV  IAF GSIFEVTG +PELGYT TYIIGTL+ PTFIFLFY+AIKKG+AEVEEDDA++  GR
Sbjct:   82 AVPEDLDYYSGLIGEQPGADKAPASGKEEAVTTSDYPIPLPSYLLLVLATVVSIAFTGSIFEVTGGHPELGYTATYIIGTLSLPTFIFLFYAAIKKGKAEVEEDDAKFGKGR 193
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BLAST of mRNA_H-elongata_contig18547.5017.1 vs. uniprot
Match: A0A835YHG1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHG1_9STRA)

HSP 1 Score: 111 bits (277), Expect = 9.320e-27
Identity = 53/72 (73.61%), Postives = 59/72 (81.94%), Query Frame = 1 
Query:  262 KDYPINLPSYLLLLLATVACIAFVGSIFEVTGPNPELGYTPTYIIGTLAFPTFIFLFYSAIKKGQAEVEEDD 477
            K YPI+ P+Y LL L+TV  IAFVGSIFEV GP+P LGY PTYIIG L+ P FIFLFY+AIKKGQAE EEDD
Sbjct:   59 KSYPIDFPAYGLLSLSTVVAIAFVGSIFEVAGPSPLLGYVPTYIIGALSLPGFIFLFYAAIKKGQAEAEEDD 130
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BLAST of mRNA_H-elongata_contig18547.5017.1 vs. uniprot
Match: A0A7S4JDB9_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JDB9_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 2.310e-14
Identity = 38/74 (51.35%), Postives = 50/74 (67.57%), Query Frame = 1 
Query:  265 DYPINLPSYLLLLLATVACIAFVGSIFEVTGPNPELGYTPTYIIGTLAFPTFIFLFYSAIKKGQAEVEEDDARY 486
            +YP+N+PS LLL  + +  IA +GSIFE++G NP  G  PT  I  +  PT +FLFY+AI KG AE EEDD  +
Sbjct:   89 NYPLNVPSPLLLGSSMILAIASIGSIFELSGGNPSNGVGPTAAIAAIGLPTCLFLFYAAIMKGIAETEEDDKAF 162
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BLAST of mRNA_H-elongata_contig18547.5017.1 vs. uniprot
Match: A0A2V3IZS2_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IZS2_9FLOR)

HSP 1 Score: 75.1 bits (183), Expect = 3.290e-13
Identity = 38/81 (46.91%), Postives = 53/81 (65.43%), Query Frame = 1 
Query:  232 RLAKGEVGTAKDYPINLPSYLLLLLATVACIAFVGSIFEVTGPNPELGYTPTYIIGTLAFPTFIFLFYSAIKKGQAEVEED 474
            R+    + T    PIN PS +LLL ++V  IA +G +FE+TG +P  G+  T  I T++ P+F+FLFY+AIKKGQ E  ED
Sbjct:   45 RIRSYSMTTEPKAPINAPSGVLLLSSSVLAIAAIGCVFELTGGHPTYGFNVTAGILTVSLPSFLFLFYAAIKKGQIEALED 125
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BLAST of mRNA_H-elongata_contig18547.5017.1 vs. uniprot
Match: A0A7S2P364_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2P364_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 7.370e-12
Identity = 34/73 (46.58%), Postives = 46/73 (63.01%), Query Frame = 1 
Query:  268 YPINLPSYLLLLLATVACIAFVGSIFEVTGPNPELGYTPTYIIGTLAFPTFIFLFYSAIKKGQAEVEEDDARY 486
            YPI+LPS +LL  + V  I+ +GS+FE+ G  P+LG+  T  I  L  P  +FL Y+AI KG AE EE D  +
Sbjct:   41 YPIDLPSPILLATSMVLAISSIGSLFELAGGTPKLGFAVTAAITALGLPISVFLIYAAILKGSAETEEADREF 113
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BLAST of mRNA_H-elongata_contig18547.5017.1 vs. uniprot
Match: A0A6T6GAQ8_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A6T6GAQ8_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 4.920e-11
Identity = 33/78 (42.31%), Postives = 50/78 (64.10%), Query Frame = 1 
Query:  265 DYPINLPSYLLLLLATVACIAFVGSIFEVTGPNPELGYTPTYIIGTLAFPTFIFLFYSAIKKGQAEVEEDDARYRGGR 498
            +YP+++PS LLL  + +  I   G +FE+TG   +LG+  T  +  ++ PT +FLFY++I K  AE EEDD RY  G+
Sbjct:  115 EYPLDVPSPLLLASSMILGIIGTGCVFELTGDAEQLGFAATAALTVVSIPTCLFLFYASILKATAETEEDDRRYMEGK 192
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BLAST of mRNA_H-elongata_contig18547.5017.1 vs. uniprot
Match: A0A7S2XVJ4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVJ4_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 7.680e-11
Identity = 32/72 (44.44%), Postives = 51/72 (70.83%), Query Frame = 1 
Query:  274 INLPSYLLLLLATVACIAFVGSIFEVTGPNPELGYTPTYIIGTLAFPTFIFLFYSAIKKGQAEVEEDDARYR 489
            + LP+YL L+++ V  IAF+G+IFEV+G  P LG+  T+ I   + P F++LFY ++K+GQ E +ED+  +R
Sbjct:  125 LPLPAYLYLVVSCVVAIAFIGTIFEVSGGKPLLGFPLTWAIMVASGPGFLYLFYCSLKRGQIEEKEDNDTWR 196
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BLAST of mRNA_H-elongata_contig18547.5017.1 vs. uniprot
Match: A0A7S0BY63_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BY63_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 1.220e-9
Identity = 31/72 (43.06%), Postives = 47/72 (65.28%), Query Frame = 1 
Query:  271 PINLPSYLLLLLATVACIAFVGSIFEVTGPNPELGYTPTYIIGTLAFPTFIFLFYSAIKKGQAEVEEDDARY 486
            P+N+PS LLL  + +  IA VGS+F++ G +P+LG+  T  I T+     ++ FY AI KG +E EEDD ++
Sbjct:   52 PLNIPSPLLLGSSMILAIAGVGSMFDIAGGSPQLGFPLTESIATVGTTISLYFFYCAILKGISETEEDDEKF 123
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BLAST of mRNA_H-elongata_contig18547.5017.1 vs. uniprot
Match: A0A7S2Y7X1_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y7X1_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 8.320e-8
Identity = 41/118 (34.75%), Postives = 60/118 (50.85%), Query Frame = 1 
Query:  151 NAKLNPATPKDMDYYSGLVGL--QPGEEERLAKGEVGTAKDYPINLPSYLLLLLATVACIAFVGSIFEVTGPNPELGYTPTYI-IGTLAFPTFIFLFYSAIKKGQAEVEEDDARYRGG 495
            N +  P TP D+   +  +    Q      LA+ E     +YP+++PS +LL  + V  I+  GS+F     N     TP  + +  + FP F+FL Y+AI KG AE +EDD RY  G
Sbjct:   55 NTQEAPTTPDDVTSLNDTIEQLQQSSPTAVLAEQE---DVEYPLDVPSPVLLASSIVLAISSTGSLFNCIEGN----ITPVSLGLAVIGFPLFLFLLYAAILKGAAETKEDDERYLNG 165
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BLAST of mRNA_H-elongata_contig18547.5017.1 vs. uniprot
Match: A0A073CJ60_PLAAG (Uncharacterized protein n=13 Tax=Planktothrix TaxID=54304 RepID=A0A073CJ60_PLAAG)

HSP 1 Score: 57.0 bits (136), Expect = 2.920e-7
Identity = 32/73 (43.84%), Postives = 44/73 (60.27%), Query Frame = 1 
Query:  250 VGTAKDYPINLPSYLLLLLATVACIAFVGSIFEVTGPNPELGYTPTYIIGTLAFPTFIFLFYSAIKKGQAEVE 468
            VGT K       S +LLL + +A IA VGS+FE++  NPELG   T +I  L+ P  +FLF++A+K  Q   E
Sbjct:    2 VGTPK-------SMVLLLGSCIAAIASVGSVFELSSGNPELGSLTTSVILALSIPLSVFLFFAAVKDAQMNQE 67
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18547.5017.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D8LJZ9_ECTSI1.380e-4470.54Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YHG1_9STRA9.320e-2773.61Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4JDB9_9STRA2.310e-1451.35Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A2V3IZS2_9FLOR3.290e-1346.91Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A7S2P364_9STRA7.370e-1246.58Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A6T6GAQ8_9STRA4.920e-1142.31Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S2XVJ4_9STRA7.680e-1144.44Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S0BY63_9STRA1.220e-943.06Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S2Y7X1_9STRA8.320e-834.75Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A073CJ60_PLAAG2.920e-743.84Uncharacterized protein n=13 Tax=Planktothrix TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18547contigH-elongata_contig18547:3700..4958 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score158.3
Seed ortholog evalue2.9e-36
Seed eggNOG ortholog2880.D8LJZ9
EggNOG OGs2E3K4@1,2SY8W@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-06_007620.1
Exons2
Model size901
Cds size471
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18547.5017.1prot_H-elongata_contig18547.5017.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18547 4094..4922 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930060.7115715-UTR-H-elongata_contig18547:3699..40931622930060.7115715-UTR-H-elongata_contig18547:3699..4093Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18547 3700..4093 -
1691679265.6190157-UTR-H-elongata_contig18547:3699..40931691679265.6190157-UTR-H-elongata_contig18547:3699..4093Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18547 3700..4093 -
1622930060.756524-UTR-H-elongata_contig18547:4922..49581622930060.756524-UTR-H-elongata_contig18547:4922..4958Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18547 4923..4958 -
1691679265.646004-UTR-H-elongata_contig18547:4922..49581691679265.646004-UTR-H-elongata_contig18547:4922..4958Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18547 4923..4958 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930060.7240946-CDS-H-elongata_contig18547:4093..42311622930060.7240946-CDS-H-elongata_contig18547:4093..4231Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18547 4094..4231 -
1691679265.6283507-CDS-H-elongata_contig18547:4093..42311691679265.6283507-CDS-H-elongata_contig18547:4093..4231Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18547 4094..4231 -
1622930060.7389479-CDS-H-elongata_contig18547:4589..49221622930060.7389479-CDS-H-elongata_contig18547:4589..4922Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18547 4590..4922 -
1691679265.6371307-CDS-H-elongata_contig18547:4589..49221691679265.6371307-CDS-H-elongata_contig18547:4589..4922Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18547 4590..4922 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18547.5017.1

>prot_H-elongata_contig18547.5017.1 ID=prot_H-elongata_contig18547.5017.1|Name=mRNA_H-elongata_contig18547.5017.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=157bp
MPVRSRIRDHVARRAAEENSASTTAGFNDDATAAEVEANAKLNPATPKDM
DYYSGLVGLQPGEEERLAKGEVGTAKDYPINLPSYLLLLLATVACIAFVG
SIFEVTGPNPELGYTPTYIIGTLAFPTFIFLFYSAIKKGQAEVEEDDARY
RGGRGW*
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mRNA from alignment at H-elongata_contig18547:3700..4958-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18547.5017.1 ID=mRNA_H-elongata_contig18547.5017.1|Name=mRNA_H-elongata_contig18547.5017.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1259bp|location=Sequence derived from alignment at H-elongata_contig18547:3700..4958- (Himanthalia elongata Himel1 dioecious)
GTTTCCCCCAATCCGCAAACGTGTCGGATCAGGTTGATGCCAGTTCGGTC
TCGGATCCGCGACCATGTAGCGCGAAGAGCTGCGGAGGAGAACTCAGCAT
CCACAACAGCAGGGTTCAACGATGATGCAACAGCGGCTGAAGTAGAAGCA
AACGCAAAGCTAAACCCAGCCACGCCGAAGGACATGGATTACTACAGCGG
ACTCGTGGGGCTTCAGCCCGGCGAAGAGGAACGTTTGGCGAAGGGCGAGG
TAGGCACGGCGAAGGACTATCCGATCAATCTTCCGTCGTACTTGCTTCTC
CTTCTCGCGACGGTGGCGTGCATTGCTTTCGTCGGCAGCATCTTCGAGGT
CACCGGCCCGAATCCAGAGGTGAGATGCAGTAAGCACATGCAGCCTCCTC
TTAGGGGACGACGCGTTGACGATCGTGCGCCCTGTGCTTTGCAGCGATCT
TTCGTTGGTGCTATTGATGTGCGAGGCGTGGGCGGTTCTGTACTTGTGCA
TTTGGTAAGGGTGGCAAGGTACATCAGTCATCGGATCACGGGAACCCAAA
CGTTTACGTTAGTCCTTGTCATAGACTATCGATATTGTAGGTCGAGAAAT
TGCCGTGCCTCTCGTGAAAGCCTCGGTAACGTATTTCCTACATAGTACGT
GTGAAGTTCCAGGGCTGTGTGTGCGCTTGAGCATTCTTTAAGCGAAACCC
TGCGTCTGTTTTCTGTTCTTGACCCAGCTCGGGTACACGCCGACGTACAT
CATAGGAACGCTGGCGTTTCCAACCTTCATTTTCTTGTTCTATTCGGCAA
TCAAAAAGGGTCAAGCAGAGGTTGAGGAGGACGACGCGAGGTACAGGGGA
GGCAGAGGCTGGTGATCATTTACTCGGCAAAAAGCAAGGCGTATTCTTGG
TGTCAGCTCGGTGGTCATAACGCGTGTATATATTGGGTGACCCTCTCGTA
GCAGGATTTGTCTTGCTCAGTCGACGGGCACGGAAGTCTATACTTTTTGC
GAGGTCGGCGGGGGCTGTCACGACGACTTTACAGCAAGCGGGGTGAACTG
ATAATATAAAGTTAGATGATGGAAGGGGGAGTTCGGTAACCTACGCTGCA
TGTGATCTTCGAAGCCGAAGCTCGTCATATTCGCATCATTCTATAGAGAA
GCTTGCGATAATGATTCCTCAGATGGTCCTCATTGTGAATACTGGCTGAA
AGCTTGCACCCTTCACCCTATGTATGTTCCGAAGAATGCGTCAGCTCGGT
GAAGCGAGA
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Coding sequence (CDS) from alignment at H-elongata_contig18547:3700..4958-

>mRNA_H-elongata_contig18547.5017.1 ID=mRNA_H-elongata_contig18547.5017.1|Name=mRNA_H-elongata_contig18547.5017.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=942bp|location=Sequence derived from alignment at H-elongata_contig18547:3700..4958- (Himanthalia elongata Himel1 dioecious)
ATGCCAGTTCGGTCTCGGATCCGCGACCATGTAGCGCGAAGAGCTGCGGA
GGAGAACTCAGCATCCACAACAGCAGGGTTCAACGATGATGCAACAGCGG
CTGAAGTAGAAGCAAACGCAAAGCTAAACCCAGCCACGCCGAAGGACATG
GATTACTACAGCGGACTCGTGGGGCTTCAGCCCGGCGAAGAGGAACGTTT
GGCGAAGGGCGAGGTAGGCACGGCGAAGGACTATCCGATCAATCTTCCGT
CGTACTTGCTTCTCCTTCTCGCGACGGTGGCGTGCATTGCTTTCGTCGGC
AGCATCTTCGAGGTCACCGGCCCGAATCCAGAGATGCCAGTTCGGTCTCG
GATCCGCGACCATGTAGCGCGAAGAGCTGCGGAGGAGAACTCAGCATCCA
CAACAGCAGGGTTCAACGATGATGCAACAGCGGCTGAAGTAGAAGCAAAC
GCAAAGCTAAACCCAGCCACGCCGAAGGACATGGATTACTACAGCGGACT
CGTGGGGCTTCAGCCCGGCGAAGAGGAACGTTTGGCGAAGGGCGAGGTAG
GCACGGCGAAGGACTATCCGATCAATCTTCCGTCGTACTTGCTTCTCCTT
CTCGCGACGGTGGCGTGCATTGCTTTCGTCGGCAGCATCTTCGAGGTCAC
CGGCCCGAATCCAGAGCTCGGGTACACGCCGACGTACATCATAGGAACGC
TGGCGTTTCCAACCTTCATTTTCTTGTTCTATTCGGCAATCAAAAAGGGT
CAAGCAGAGGTTGAGGAGGACGACGCGAGGTACAGGGGAGGCAGAGGCTG
GTGACTCGGGTACACGCCGACGTACATCATAGGAACGCTGGCGTTTCCAA
CCTTCATTTTCTTGTTCTATTCGGCAATCAAAAAGGGTCAAGCAGAGGTT
GAGGAGGACGACGCGAGGTACAGGGGAGGCAGAGGCTGGTGA
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