mRNA_H-elongata_contig18544.5011.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18544.5011.1
Unique NamemRNA_H-elongata_contig18544.5011.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18544.5011.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18544contigH-elongata_contig18544:610..741 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size132
Cds size132
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930060.3814669-CDS-H-elongata_contig18544:609..7411622930060.3814669-CDS-H-elongata_contig18544:609..741Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18544 610..741 +
1691679265.4859054-CDS-H-elongata_contig18544:609..7411691679265.4859054-CDS-H-elongata_contig18544:609..741Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18544 610..741 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18544.5011.1prot_H-elongata_contig18544.5011.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18544 610..741 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18544.5011.1

>prot_H-elongata_contig18544.5011.1 ID=prot_H-elongata_contig18544.5011.1|Name=mRNA_H-elongata_contig18544.5011.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=44bp
MKCAAHAVDLLLIDLGNLDFFADTLKRIHKVVKFVKNHHSTSAI
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mRNA from alignment at H-elongata_contig18544:610..741+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18544.5011.1 ID=mRNA_H-elongata_contig18544.5011.1|Name=mRNA_H-elongata_contig18544.5011.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=132bp|location=Sequence derived from alignment at H-elongata_contig18544:610..741+ (Himanthalia elongata Himel1 dioecious)
ATGAAGTGCGCAGCTCACGCTGTGGACCTGCTGCTCATAGATCTCGGGAA
CCTCGACTTCTTCGCTGACACCCTCAAGCGCATCCACAAGGTCGTGAAGT
TCGTCAAAAACCACCACAGCACCAGCGCCATC
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Coding sequence (CDS) from alignment at H-elongata_contig18544:610..741+

>mRNA_H-elongata_contig18544.5011.1 ID=mRNA_H-elongata_contig18544.5011.1|Name=mRNA_H-elongata_contig18544.5011.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=264bp|location=Sequence derived from alignment at H-elongata_contig18544:610..741+ (Himanthalia elongata Himel1 dioecious)
ATGAAGTGCGCAGCTCACGCTGTGGACCTGCTGCTCATAGATCTCGGGAA
CCTCGACTTCTTCGCTGACACCCTCAAGCGCATCCACAAGGTCGTGAAGT
TCGTCAAAAACCACCACAGCACCAGCGCCATCATGAAGTGCGCAGCTCAC
GCTGTGGACCTGCTGCTCATAGATCTCGGGAACCTCGACTTCTTCGCTGA
CACCCTCAAGCGCATCCACAAGGTCGTGAAGTTCGTCAAAAACCACCACA
GCACCAGCGCCATC
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