mRNA_H-elongata_contig183166.4924.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig183166.4924.1
Unique NamemRNA_H-elongata_contig183166.4924.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig183166.4924.1 vs. uniprot
Match: A0A6H5JCQ3_9PHAE (Prolyl endopeptidase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCQ3_9PHAE)

HSP 1 Score: 166 bits (420), Expect = 1.220e-47
Identity = 70/98 (71.43%), Postives = 88/98 (89.80%), Query Frame = 1
Query:    1 SSPGSDNWADAIPYDPSVCLRGVICFENHIVLRGREGGLSQLWIRDMRSGEMHQLEHPEEAYACYSTRNMVFESGLIRFVYQSMLSPSSVFDYNMDTR 294
            S+PGS+NW D +PYDP+VCL+GV+CFENHIVL GRE GLSQLWIRDMR+G+ HQ+EHPE+AYACYST NMVF++  +RF YQSM+SP +VFDY+MD++
Sbjct:   13 SAPGSENWTDVMPYDPAVCLKGVLCFENHIVLSGRENGLSQLWIRDMRTGKSHQVEHPEQAYACYSTCNMVFDTSTLRFGYQSMVSPRAVFDYDMDSK 110          
BLAST of mRNA_H-elongata_contig183166.4924.1 vs. uniprot
Match: D8LFV2_ECTSI (Prolyl endopeptidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFV2_ECTSI)

HSP 1 Score: 162 bits (411), Expect = 1.400e-44
Identity = 69/98 (70.41%), Postives = 86/98 (87.76%), Query Frame = 1
Query:    1 SSPGSDNWADAIPYDPSVCLRGVICFENHIVLRGREGGLSQLWIRDMRSGEMHQLEHPEEAYACYSTRNMVFESGLIRFVYQSMLSPSSVFDYNMDTR 294
            S+PGS+NW D +PYDP VCL+GV+CFENHIVL GRE GLSQLWIRDMR+GE HQ++HPE+AYACYST N VF++  +RF YQSM+SP +VFDY+MD++
Sbjct:  370 SAPGSENWTDVMPYDPDVCLKGVLCFENHIVLSGREKGLSQLWIRDMRTGESHQVKHPEQAYACYSTCNRVFDTSTLRFGYQSMVSPRAVFDYDMDSK 467          
BLAST of mRNA_H-elongata_contig183166.4924.1 vs. uniprot
Match: A0A2V9QUR2_9BACT (Oligopeptidase B (Fragment) n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V9QUR2_9BACT)

HSP 1 Score: 104 bits (260), Expect = 4.140e-24
Identity = 46/98 (46.94%), Postives = 65/98 (66.33%), Query Frame = 1
Query:    1 SSPGSDNWADAIPYDPSVCLRGVICFENHIVLRGREGGLSQLWIRDMRSGEMHQLEHPEEAYACYSTRNMVFESGLIRFVYQSMLSPSSVFDYNMDTR 294
            S P  +NW + +P+ PSV L GV CF NH VL  RE G+ Q+ + D RSG+ H+ + PE AY  +   N  +++ L R+ YQS+++PSSVFDY+MD R
Sbjct:  254 SDPRKENWKEVVPHRPSVMLEGVECFLNHYVLLERENGVPQIRVTDFRSGQSHRAKFPEPAYTTFPAANPEWDTSLFRYNYQSLVTPSSVFDYDMDQR 351          
BLAST of mRNA_H-elongata_contig183166.4924.1 vs. uniprot
Match: A0A1F2QTP4_9BACT (Oligopeptidase B (Fragment) n=1 Tax=Acidobacteria bacterium RBG_16_70_10 TaxID=1797174 RepID=A0A1F2QTP4_9BACT)

HSP 1 Score: 101 bits (252), Expect = 4.410e-23
Identity = 41/98 (41.84%), Postives = 66/98 (67.35%), Query Frame = 1
Query:    1 SSPGSDNWADAIPYDPSVCLRGVICFENHIVLRGREGGLSQLWIRDMRSGEMHQLEHPEEAYACYSTRNMVFESGLIRFVYQSMLSPSSVFDYNMDTR 294
            ++PG + W + +P+ P V L  V CF+ H VL  REGGL Q+ + D+R+GE H++  PE AY+ +   N  F++   R+ YQS+++PSS++DY+M+ R
Sbjct:  306 AAPGREGWTEVVPHRPEVMLEWVDCFQRHCVLVEREGGLPQVRVTDLRTGESHRIAFPEPAYSAFPENNAEFDTTTYRYAYQSLVTPSSIYDYDMEKR 403          
BLAST of mRNA_H-elongata_contig183166.4924.1 vs. uniprot
Match: A0A7Y5CLX6_9BACT (S9 family peptidase n=1 Tax=candidate division KSB1 bacterium TaxID=2172550 RepID=A0A7Y5CLX6_9BACT)

HSP 1 Score: 100 bits (250), Expect = 9.590e-23
Identity = 42/98 (42.86%), Postives = 64/98 (65.31%), Query Frame = 1
Query:    1 SSPGSDNWADAIPYDPSVCLRGVICFENHIVLRGREGGLSQLWIRDMRSGEMHQLEHPEEAYACYSTRNMVFESGLIRFVYQSMLSPSSVFDYNMDTR 294
            S P  +NW + +P+ P V L  + CF +H VL  R+ GL Q+ I D+R+G  H L  PE  Y+ Y+  N V+ +  +R+ YQS+++PSSV+DY+M+TR
Sbjct:  311 SDPSPENWQEIVPHRPEVMLESIDCFADHYVLSERKNGLEQIRITDLRTGASHYLAFPEPVYSAYAATNRVWNTATLRYNYQSLITPSSVYDYDMNTR 408          
BLAST of mRNA_H-elongata_contig183166.4924.1 vs. uniprot
Match: A0A2V9DNF8_9BACT (Oligopeptidase B n=2 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V9DNF8_9BACT)

HSP 1 Score: 98.6 bits (244), Expect = 6.210e-22
Identity = 43/98 (43.88%), Postives = 65/98 (66.33%), Query Frame = 1
Query:    1 SSPGSDNWADAIPYDPSVCLRGVICFENHIVLRGREGGLSQLWIRDMRSGEMHQLEHPEEAYACYSTRNMVFESGLIRFVYQSMLSPSSVFDYNMDTR 294
            + P  ++W + IP+ PSV L  +  F +H VL  RE GL +L + D+R+ + H++E PE AYA +  +N  F++   RF YQS+++PSSVFDY+MD R
Sbjct:  323 ADPRRESWKEVIPHRPSVMLEAMAFFAHHYVLLEREDGLPRLRVTDLRNSQSHRIEFPEPAYAAFLAQNPEFDTATFRFTYQSLITPSSVFDYDMDKR 420          
BLAST of mRNA_H-elongata_contig183166.4924.1 vs. uniprot
Match: A0A836CLF5_9STRA (Prolyl endopeptidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLF5_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 8.610e-22
Identity = 41/94 (43.62%), Postives = 62/94 (65.96%), Query Frame = 1
Query:   10 GSDNWADAIPYDPSVCLRGVICFENHIVLRGREGGLSQLWIRDMRSGEMHQLEHPEEAYACYSTRNMVFESGLIRFVYQSMLSPSSVFDYNMDT 291
            G+ NW +  PYDP+  L  ++CFE H++L GR+GGL Q+WI D  +G    +E PE A   Y + N  F++  +RF Y S++SPSS +DY+M++
Sbjct:  471 GAKNWREVQPYDPARKLDALLCFEKHLLLTGRQGGLKQMWILDPETGSTKPIEQPEAACHAYPSGNYQFKTSTLRFSYGSLVSPSSTYDYDMNS 564          
BLAST of mRNA_H-elongata_contig183166.4924.1 vs. uniprot
Match: UPI0019EE62BD (S9 family peptidase n=1 Tax=filamentous cyanobacterium LEGE 07170 TaxID=1828880 RepID=UPI0019EE62BD)

HSP 1 Score: 95.9 bits (237), Expect = 5.470e-21
Identity = 42/96 (43.75%), Postives = 62/96 (64.58%), Query Frame = 1
Query:    7 PGSDNWADAIPYDPSVCLRGVICFENHIVLRGREGGLSQLWIRDMRSGEMHQLEHPEEAYACYSTRNMVFESGLIRFVYQSMLSPSSVFDYNMDTR 294
            P  + W   +P+   V L GV  F NH+VL  REGG+ Q+ + ++ SGE H ++ PE +Y  Y   N  F++ ++RF Y S+L+PSSVFDY+M+TR
Sbjct:  307 PRPERWETVVPHRDDVLLEGVSAFINHLVLYEREGGIPQVQVCNLTSGEQHPIDFPESSYEVYEGANPEFDTPVLRFTYTSLLTPSSVFDYDMNTR 402          
BLAST of mRNA_H-elongata_contig183166.4924.1 vs. uniprot
Match: A0A0S8KA69_9BACT (Protease 2 n=1 Tax=candidate division Zixibacteria bacterium SM23_81 TaxID=1703428 RepID=A0A0S8KA69_9BACT)

HSP 1 Score: 95.5 bits (236), Expect = 7.460e-21
Identity = 41/98 (41.84%), Postives = 65/98 (66.33%), Query Frame = 1
Query:    1 SSPGSDNWADAIPYDPSVCLRGVICFENHIVLRGREGGLSQLWIRDMRSGEMHQLEHPEEAYACYSTRNMVFESGLIRFVYQSMLSPSSVFDYNMDTR 294
            S P  DNW + IP+   V +  +  FENH+VL  REGGL ++ + ++RS ++H++E PE  Y C+  RN  F + ++RF Y S+++P SVFDY+M+ +
Sbjct:  293 SQPSKDNWQEVIPHREHVKIDRIDLFENHLVLYEREGGLKKIRVMNLRSRQIHEVELPEPVYTCWPERNPEFYTHVLRFNYSSLVTPRSVFDYDMNAK 390          
BLAST of mRNA_H-elongata_contig183166.4924.1 vs. uniprot
Match: A0A7Y5G2V7_9BACT (S9 family peptidase n=2 Tax=candidate division KSB1 bacterium TaxID=2172550 RepID=A0A7Y5G2V7_9BACT)

HSP 1 Score: 95.1 bits (235), Expect = 1.020e-20
Identity = 41/96 (42.71%), Postives = 61/96 (63.54%), Query Frame = 1
Query:    7 PGSDNWADAIPYDPSVCLRGVICFENHIVLRGREGGLSQLWIRDMRSGEMHQLEHPEEAYACYSTRNMVFESGLIRFVYQSMLSPSSVFDYNMDTR 294
            P   NW + IP+ P   L G+ CF N   L  R+ GL Q+ + D++SGE H L  PE AY+ + + N  +++ L+R+ YQS+L+PSSVFDY++  R
Sbjct:  313 PDEKNWKEIIPHRPETMLEGIDCFANFYALYERQNGLPQIRLTDLKSGESHYLAFPEPAYSVFPSTNREWDTNLLRYSYQSLLTPSSVFDYDVTAR 408          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig183166.4924.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JCQ3_9PHAE1.220e-4771.43Prolyl endopeptidase n=1 Tax=Ectocarpus sp. CCAP 1... [more]
D8LFV2_ECTSI1.400e-4470.41Prolyl endopeptidase n=1 Tax=Ectocarpus siliculosu... [more]
A0A2V9QUR2_9BACT4.140e-2446.94Oligopeptidase B (Fragment) n=1 Tax=Acidobacteria ... [more]
A0A1F2QTP4_9BACT4.410e-2341.84Oligopeptidase B (Fragment) n=1 Tax=Acidobacteria ... [more]
A0A7Y5CLX6_9BACT9.590e-2342.86S9 family peptidase n=1 Tax=candidate division KSB... [more]
A0A2V9DNF8_9BACT6.210e-2243.88Oligopeptidase B n=2 Tax=Acidobacteria bacterium T... [more]
A0A836CLF5_9STRA8.610e-2243.62Prolyl endopeptidase n=1 Tax=Tribonema minus TaxID... [more]
UPI0019EE62BD5.470e-2143.75S9 family peptidase n=1 Tax=filamentous cyanobacte... [more]
A0A0S8KA69_9BACT7.460e-2141.84Protease 2 n=1 Tax=candidate division Zixibacteria... [more]
A0A7Y5G2V7_9BACT1.020e-2042.71S9 family peptidase n=2 Tax=candidate division KSB... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig183166contigH-elongata_contig183166:109..1165 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score163.3
Seed ortholog evalue5.7e-38
Seed eggNOG ortholog2880.D8LFV2
Preferred nameOPB
KEGG koko:K01354
KEGG Pathwayko05142,ko05143,map05142,map05143
EggNOG free text desc.serine-type exopeptidase activity
EggNOG OGsCOG1505@1,KOG2237@2759
Ec32 ortholog descriptionPeptidase S9A, N-terminal domain
Ec32 orthologEc-05_005410.1
EC3.4.21.83
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002
Hectar predicted targeting categoryother localisation
Exons2
Model size294
Cds size294
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930052.6763577-CDS-H-elongata_contig183166:108..2121622930052.6763577-CDS-H-elongata_contig183166:108..212Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig183166 109..212 +
1691679262.272939-CDS-H-elongata_contig183166:108..2121691679262.272939-CDS-H-elongata_contig183166:108..212Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig183166 109..212 +
1622930052.7081628-CDS-H-elongata_contig183166:975..11651622930052.7081628-CDS-H-elongata_contig183166:975..1165Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig183166 976..1165 +
1691679262.285917-CDS-H-elongata_contig183166:975..11651691679262.285917-CDS-H-elongata_contig183166:975..1165Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig183166 976..1165 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig183166.4924.1prot_H-elongata_contig183166.4924.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig183166 109..1165 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig183166.4924.1

>prot_H-elongata_contig183166.4924.1 ID=prot_H-elongata_contig183166.4924.1|Name=mRNA_H-elongata_contig183166.4924.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=98bp
SSPGSDNWADAIPYDPSVCLRGVICFENHIVLRGREGGLSQLWIRDMRSG
EMHQLEHPEEAYACYSTRNMVFESGLIRFVYQSMLSPSSVFDYNMDTR
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mRNA from alignment at H-elongata_contig183166:109..1165+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig183166.4924.1 ID=mRNA_H-elongata_contig183166.4924.1|Name=mRNA_H-elongata_contig183166.4924.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1057bp|location=Sequence derived from alignment at H-elongata_contig183166:109..1165+ (Himanthalia elongata Himel1 dioecious)
AGTTCGCCGGGATCGGACAACTGGGCGGATGCTATTCCGTACGATCCGTC CGTCTGCCTCCGGGGAGTCATCTGTTTCGAGAACCATATCGTCCTGAGGG GACGGTGAGTCGAAAACAAGGCGGCGGAATCGAGAGAGAGGAAGCCTTAT TTTCTCCTCTACTTTACCGTTGGAATATTTTATTTCCGTTGGATTTTGTC CTCGTATTGATAGTACAGTATTATAGTCACTTGTCATTTTATATTGATGG ATGCGGCTTGTTGTTGTTCCAGCGAATCTGCTACGCTGATCTTACGTGGT TGTTTGCGAATCTGATACGTTAATCATTCGGCGGTTGGTTGCGGCGAATC AAATACGTTAATCATTCGGCGGTTGGTTGCGGCGAATCAAATACGCTGAT CATACAGCGGTTGTTTGCGAATCTGATACGTTTATCATACGGTGGTTGCT TGTGAATCCGATACGTGGATCATACGGTGGTTGCGTATCTGAGAAGTGGA TCACACTGTTTTCATGTTCCAAGTATACTGTACCCAAGTGTATCCGCGAA CTTGCTTAAACGATTTAAAAGGTACATTATCCAAGTACCCCTTACGTTGA TGGTACTATTTTAAAAGATATCCAAATATCCGTGATGTTGATGATACGAT TTTTAAAAGGTATCCAAAGTACCCGTTGCGTGTAATAATACGACAAAGGA TCCTTCATGTTGATCATGTCAGACGGTCTCGTACGCTAGTGTTGATTGAA CGATACGTCAATCGTGTCATGTGTGGTCTCATACGCTAGCATACGCTAGT GTTGATTGAAACATACGCCAATCATACGTATCCACCCACGGCCCGTTTTA TTTATTTCTTGTCGCAGCGAGGGCGGACTGTCCCAGCTTTGGATCCGAGA CATGCGAAGCGGCGAGATGCACCAATTGGAACACCCAGAGGAGGCGTACG CGTGCTATTCAACAAGAAACATGGTTTTCGAGTCTGGCCTCATACGTTTC GTGTACCAATCGATGCTATCGCCCTCATCGGTTTTCGACTACAACATGGA TACCAGG
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Coding sequence (CDS) from alignment at H-elongata_contig183166:109..1165+

>mRNA_H-elongata_contig183166.4924.1 ID=mRNA_H-elongata_contig183166.4924.1|Name=mRNA_H-elongata_contig183166.4924.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=588bp|location=Sequence derived from alignment at H-elongata_contig183166:109..1165+ (Himanthalia elongata Himel1 dioecious)
AGTTCGCCGGGATCGGACAACTGGGCGGATGCTATTCCGTACGATCCGTC
CGTCTGCCTCCGGGGAGTCATCTGTTTCGAGAACCATATCGTCCTGAGGG
GACGAGTTCGCCGGGATCGGACAACTGGGCGGATGCTATTCCGTACGATC
CGTCCGTCTGCCTCCGGGGAGTCATCTGTTTCGAGAACCATATCGTCCTG
AGGGGACGCGAGGGCGGACTGTCCCAGCTTTGGATCCGAGACATGCGAAG
CGGCGAGATGCACCAATTGGAACACCCAGAGGAGGCGTACGCGTGCTATT
CAACAAGAAACATGGTTTTCGAGTCTGGCCTCATACGTTTCGTGTACCAA
TCGATGCTATCGCCCTCATCGGTTTTCGACTACAACATGGATACCAGGCG
AGGGCGGACTGTCCCAGCTTTGGATCCGAGACATGCGAAGCGGCGAGATG
CACCAATTGGAACACCCAGAGGAGGCGTACGCGTGCTATTCAACAAGAAA
CATGGTTTTCGAGTCTGGCCTCATACGTTTCGTGTACCAATCGATGCTAT
CGCCCTCATCGGTTTTCGACTACAACATGGATACCAGG
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