mRNA_H-elongata_contig182431.4892.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig182431.4892.1
Unique NamemRNA_H-elongata_contig182431.4892.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig182431.4892.1 vs. uniprot
Match: D7G2M8_ECTSI (E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2M8_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 7.420e-15
Identity = 31/38 (81.58%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:    1 QAGGCCDCGDPDAWDPSGFCRSHGLDNLDPLKELPPGI 114
            QAGGCCDCGDPDAWD  GFCR HGLDN DPL ELP G+
Sbjct:  256 QAGGCCDCGDPDAWDYRGFCRHHGLDNRDPLLELPQGL 293
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BLAST of mRNA_H-elongata_contig182431.4892.1 vs. uniprot
Match: A0A6H5JTE4_9PHAE (E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTE4_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 4.830e-14
Identity = 30/38 (78.95%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:    1 QAGGCCDCGDPDAWDPSGFCRSHGLDNLDPLKELPPGI 114
            QAGGCCDCGDPDAWD  GFC  HGLDN DPL+ELP G+
Sbjct:  257 QAGGCCDCGDPDAWDYRGFCPHHGLDNGDPLQELPQGL 294
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BLAST of mRNA_H-elongata_contig182431.4892.1 vs. uniprot
Match: W7U0V5_9STRA (E3 ubiquitin-protein ligase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U0V5_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 3.400e-11
Identity = 26/38 (68.42%), Postives = 27/38 (71.05%), Query Frame = 1 
Query:    1 QAGGCCDCGDPDAWDPSGFCRSHGLDNLDPLKELPPGI 114
            QAGGCCDCGD DAWD +GFC  HG D  DPL  LPP  
Sbjct:  298 QAGGCCDCGDDDAWDKAGFCPRHGQDGNDPLSHLPPSF 335
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BLAST of mRNA_H-elongata_contig182431.4892.1 vs. uniprot
Match: A0A5D6XUK7_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XUK7_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 7.750e-10
Identity = 25/41 (60.98%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:    1 QAGGCCDCGDPDAWDPSGFCRSH-GLDNLDPLKELPPGIYI 120
            Q+GGCCDCGD +AW P GFC SH G  + DPL+ LPP I +
Sbjct:  185 QSGGCCDCGDTEAWAPEGFCTSHKGAQDADPLRLLPPDILV 225
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BLAST of mRNA_H-elongata_contig182431.4892.1 vs. uniprot
Match: A0A7S0TMJ5_HEMAN (E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TMJ5_HEMAN)

HSP 1 Score: 57.8 bits (138), Expect = 1.700e-9
Identity = 24/36 (66.67%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:    4 AGGCCDCGDPDAWDPSGFCRSH-GLDNLDPLKELPP 108
            AGGCCDCGD +AWDPSGFC+ H G  + DPL  +PP
Sbjct:   18 AGGCCDCGDHEAWDPSGFCKRHSGPSDEDPLAAMPP 53
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BLAST of mRNA_H-elongata_contig182431.4892.1 vs. uniprot
Match: A0A8K1C667_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C667_PYTOL)

HSP 1 Score: 60.1 bits (144), Expect = 1.980e-9
Identity = 24/41 (58.54%), Postives = 29/41 (70.73%), Query Frame = 1 
Query:    1 QAGGCCDCGDPDAWDPSGFCRSH-GLDNLDPLKELPPGIYI 120
             +GGCCDCGDP+AW P GFC  H G  ++DPL   PPG+ I
Sbjct:  147 HSGGCCDCGDPEAWAPEGFCTHHRGAQDVDPLLFYPPGLVI 187
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BLAST of mRNA_H-elongata_contig182431.4892.1 vs. uniprot
Match: A0A7S2DRZ5_9STRA (E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DRZ5_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 2.950e-9
Identity = 24/35 (68.57%), Postives = 25/35 (71.43%), Query Frame = 1 
Query:    1 QAGGCCDCGDPDAWDPSGFCRSHGLDNLDPLKELP 105
            QAGGCCDCGDPDAW   GFC +HG    DPL  LP
Sbjct:   58 QAGGCCDCGDPDAWAADGFCTAHGHALSDPLATLP 92
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BLAST of mRNA_H-elongata_contig182431.4892.1 vs. uniprot
Match: A0A7S1H8G3_HEMAN (E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1H8G3_HEMAN)

HSP 1 Score: 57.8 bits (138), Expect = 4.640e-9
Identity = 24/36 (66.67%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:    4 AGGCCDCGDPDAWDPSGFCRSH-GLDNLDPLKELPP 108
            AGGCCDCGD +AWDPSGFC+ H G  + DPL  +PP
Sbjct:  134 AGGCCDCGDHEAWDPSGFCKRHSGPSDEDPLAAMPP 169
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BLAST of mRNA_H-elongata_contig182431.4892.1 vs. uniprot
Match: A0A7R9VHK1_9STRA (E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VHK1_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 4.950e-9
Identity = 22/26 (84.62%), Postives = 24/26 (92.31%), Query Frame = 1 
Query:    1 QAGGCCDCGDPDAWDPSGFCRSHGLD 78
            QAGGCCDCGDPDAWDP+GFC  HG+D
Sbjct:  178 QAGGCCDCGDPDAWDPAGFCPRHGVD 203
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BLAST of mRNA_H-elongata_contig182431.4892.1 vs. uniprot
Match: A0A2R5G4R1_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G4R1_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.290e-8
Identity = 24/39 (61.54%), Postives = 27/39 (69.23%), Query Frame = 1 
Query:    1 QAGGCCDCGDPDAWDPSGFCRSHGLDNL-DPLKELPPGI 114
             AGGCCDCGDP AWDPSGFC  HG  N+ +P   LP  +
Sbjct:  208 DAGGCCDCGDPGAWDPSGFCNKHGESNVPEPKNWLPAAM 246
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig182431.4892.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2M8_ECTSI7.420e-1581.58E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus sil... [more]
A0A6H5JTE4_9PHAE4.830e-1478.95E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus sp.... [more]
W7U0V5_9STRA3.400e-1168.42E3 ubiquitin-protein ligase n=2 Tax=Monodopsidacea... [more]
A0A5D6XUK7_9STRA7.750e-1060.98E3 ubiquitin-protein ligase n=1 Tax=Pythium brassi... [more]
A0A7S0TMJ5_HEMAN1.700e-966.67E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Hem... [more]
A0A8K1C667_PYTOL1.980e-958.54Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S2DRZ5_9STRA2.950e-968.57E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Dic... [more]
A0A7S1H8G3_HEMAN4.640e-966.67E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Hem... [more]
A0A7R9VHK1_9STRA4.950e-984.62E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Pse... [more]
A0A2R5G4R1_9STRA1.290e-861.54E3 ubiquitin-protein ligase n=1 Tax=Hondaea fermen... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig182431contigH-elongata_contig182431:65..187 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.3
Seed ortholog evalue3.8e-12
Seed eggNOG ortholog2880.D7G2M8
KEGG koko:K10625,ko:K11978
GOsGO:0000003,GO:0000151,GO:0000280,GO:0001101,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006259,GO:0006310,GO:0006325,GO:0006342,GO:0006355,GO:0006464,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0006996,GO:0007049,GO:0007127,GO:0007131,GO:0007140,GO:0007141,GO:0007276,GO:0007283,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009605,GO:0009607,GO:0009620,GO:0009719,GO:0009725,GO:0009737,GO:0009889,GO:0009890,GO:0009892,GO:0009894,GO:0009966,GO:0009968,GO:0009987,GO:0010029,GO:0010033,GO:0010243,GO:0010468,GO:0010498,GO:0010528,GO:0010529,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0010646,GO:0010648,GO:0016043,GO:0016458,GO:0016567,GO:0016569,GO:0016570,GO:0016574,GO:0016597,GO:0016740,GO:0019216,GO:0019219,GO:0019222,GO:0019538,GO:0019787,GO:0019941,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0023051,GO:0023057,GO:0030163,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031406,GO:0032006,GO:0032007,GO:0032446,GO:0032501,GO:0032504,GO:0032991,GO:0033522,GO:0033993,GO:0034641,GO:0035825,GO:0036094,GO:0036211,GO:0040029,GO:0042221,GO:0043161,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043177,GO:0043200,GO:0043201,GO:0043207,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0044703,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048232,GO:0048285,GO:0048519,GO:0048523,GO:0048580,GO:0048583,GO:0048585,GO:0048609,GO:0050789,GO:0050793,GO:0050794,GO:0050832,GO:0050896,GO:0050994,GO:0051171,GO:0051172,GO:0051239,GO:0051252,GO:0051253,GO:0051276,GO:0051321,GO:0051603,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0061630,GO:0061659,GO:0061982,GO:0065007,GO:0070647,GO:0070728,GO:0070887,GO:0071229,GO:0071230,GO:0071233,GO:0071310,GO:0071417,GO:0071495,GO:0071596,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097305,GO:0098542,GO:0140013,GO:0140096,GO:1900140,GO:1901360,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902494,GO:1902531,GO:1902532,GO:1902679,GO:1903046,GO:1903506,GO:1903507,GO:1990234,GO:2000026,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.E3 ubiquitin-protein ligase
EggNOG OGsKOG1139@1,KOG1139@2759,KOG1140@1,KOG1140@2759
EC2.3.2.27
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size123
Cds size123
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930049.8886063-CDS-H-elongata_contig182431:64..1871622930049.8886063-CDS-H-elongata_contig182431:64..187Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig182431 65..187 +
1691679261.237115-CDS-H-elongata_contig182431:64..1871691679261.237115-CDS-H-elongata_contig182431:64..187Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig182431 65..187 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig182431.4892.1prot_H-elongata_contig182431.4892.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig182431 65..187 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig182431.4892.1

>prot_H-elongata_contig182431.4892.1 ID=prot_H-elongata_contig182431.4892.1|Name=mRNA_H-elongata_contig182431.4892.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=41bp
QAGGCCDCGDPDAWDPSGFCRSHGLDNLDPLKELPPGIYI*
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mRNA from alignment at H-elongata_contig182431:65..187+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig182431.4892.1 ID=mRNA_H-elongata_contig182431.4892.1|Name=mRNA_H-elongata_contig182431.4892.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=123bp|location=Sequence derived from alignment at H-elongata_contig182431:65..187+ (Himanthalia elongata Himel1 dioecious)
CAGGCGGGTGGGTGCTGTGACTGCGGGGACCCCGACGCTTGGGACCCCAG
CGGCTTCTGCCGGAGCCACGGGCTCGACAACCTCGACCCCCTCAAAGAGC
TACCGCCAGGTATATATATATAA
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Coding sequence (CDS) from alignment at H-elongata_contig182431:65..187+

>mRNA_H-elongata_contig182431.4892.1 ID=mRNA_H-elongata_contig182431.4892.1|Name=mRNA_H-elongata_contig182431.4892.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=246bp|location=Sequence derived from alignment at H-elongata_contig182431:65..187+ (Himanthalia elongata Himel1 dioecious)
CAGGCGGGTGGGTGCTGTGACTGCGGGGACCCCGACGCTTGGGACCCCAG
CGGCTTCTGCCGGAGCCACGGGCTCGACAACCTCGACCCCCTCAAAGAGC
TACCGCCAGGTATATATATATAACAGGCGGGTGGGTGCTGTGACTGCGGG
GACCCCGACGCTTGGGACCCCAGCGGCTTCTGCCGGAGCCACGGGCTCGA
CAACCTCGACCCCCTCAAAGAGCTACCGCCAGGTATATATATATAA
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