mRNA_H-elongata_contig181200.4843.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig181200.4843.1
Unique NamemRNA_H-elongata_contig181200.4843.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig181200.4843.1 vs. uniprot
Match: A0A6H5KK84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK84_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 2.220e-20
Identity = 47/64 (73.44%), Postives = 54/64 (84.38%), Query Frame = 1 
Query:    4 SREAEVRLSMLALLECVVKQREVTEETLRPHAECLVRKMVLPNVVWRAGLVAATVRKVTEGVAF 195
            +RE EVRLSMLALLECVVK   VTEE+LRPHAE ++++MVLPN VWRAGLVAATVRKV   V +
Sbjct:  464 TREPEVRLSMLALLECVVKHDGVTEESLRPHAETMLKEMVLPNAVWRAGLVAATVRKVAIAVLY 527
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BLAST of mRNA_H-elongata_contig181200.4843.1 vs. uniprot
Match: D7FI57_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI57_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 7.760e-20
Identity = 47/64 (73.44%), Postives = 53/64 (82.81%), Query Frame = 1 
Query:    4 SREAEVRLSMLALLECVVKQREVTEETLRPHAECLVRKMVLPNVVWRAGLVAATVRKVTEGVAF 195
            +RE EVRLSMLALLECVVK   VTEE+LRPHAE L+++MVLPN VWRAGLVAA VRKV   V +
Sbjct:  657 TREPEVRLSMLALLECVVKHDGVTEESLRPHAETLLKEMVLPNAVWRAGLVAAPVRKVAIAVLY 720
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BLAST of mRNA_H-elongata_contig181200.4843.1 vs. uniprot
Match: A0A1V9Z755_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z755_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 8.920e-8
Identity = 30/59 (50.85%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:    1 PSREAEVRLSMLALLECVVKQREVTEETLRPHAECLVRKMVLPNVVWRAGLVAATVRKV 177
            P+RE +VRL+ LALLE ++   +V     RP A  L+ K + PN+VW+AG VAAT+RKV
Sbjct:  606 PAREPDVRLAFLALLETLLGHPDVAP-AFRPFASTLLIKAITPNIVWQAGKVAATIRKV 663
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BLAST of mRNA_H-elongata_contig181200.4843.1 vs. uniprot
Match: W2PQ39_PHYPN (Uncharacterized protein n=43 Tax=Phytophthora TaxID=4783 RepID=W2PQ39_PHYPN)

HSP 1 Score: 57.0 bits (136), Expect = 8.940e-8
Identity = 27/65 (41.54%), Postives = 45/65 (69.23%), Query Frame = 1 
Query:    1 PSREAEVRLSMLALLECVVKQREVTEETLRPHAECLVRKMVLPNVVWRAGLVAATVRKVTEGVAF 195
            P ++A+VRL+ LALLE ++    +++   +P +  L++K ++PN+VWR G VAAT+RKV    A+
Sbjct:  656 PDQDADVRLASLALLETMLGTDAISQ-AFKPFSVALLQKAIIPNIVWRGGRVAATIRKVAVACAY 719
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BLAST of mRNA_H-elongata_contig181200.4843.1 vs. uniprot
Match: A0A225WPQ1_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WPQ1_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 1.220e-7
Identity = 27/65 (41.54%), Postives = 46/65 (70.77%), Query Frame = 1 
Query:    1 PSREAEVRLSMLALLECVVKQREVTEETLRPHAECLVRKMVLPNVVWRAGLVAATVRKVTEGVAF 195
            P+++A+VRL+ LALLE ++    +++   +P +  L++K ++PN+VWR G VAAT+RKV    A+
Sbjct:  632 PAQDADVRLAFLALLETMLGTDAISQ-AFKPFSVGLLQKAIIPNIVWRGGRVAATIRKVAVACAY 695
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BLAST of mRNA_H-elongata_contig181200.4843.1 vs. uniprot
Match: A0A6G0XR12_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XR12_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 5.830e-7
Identity = 28/59 (47.46%), Postives = 43/59 (72.88%), Query Frame = 1 
Query:    1 PSREAEVRLSMLALLECVVKQREVTEETLRPHAECLVRKMVLPNVVWRAGLVAATVRKV 177
            PS+E +VRL+ LALLE ++   E+  ++ +P A  ++ K + PN+VW++G VAATVRKV
Sbjct:  601 PSKEPDVRLAFLALLETMLGN-ELIAQSFQPFASSMLVKGITPNIVWQSGKVAATVRKV 658
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BLAST of mRNA_H-elongata_contig181200.4843.1 vs. uniprot
Match: G4YK90_PHYSP (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=G4YK90_PHYSP)

HSP 1 Score: 54.7 bits (130), Expect = 5.840e-7
Identity = 26/65 (40.00%), Postives = 46/65 (70.77%), Query Frame = 1 
Query:    1 PSREAEVRLSMLALLECVVKQREVTEETLRPHAECLVRKMVLPNVVWRAGLVAATVRKVTEGVAF 195
            P+++A+VRL+ LALLE ++    +++ + +  +  L++K ++PN+VWR G VAAT+RKV    A+
Sbjct:  631 PAQDADVRLAFLALLETMLGTDAISQ-SFKAFSVSLLQKAIIPNIVWRGGRVAATIRKVAVACAY 694
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BLAST of mRNA_H-elongata_contig181200.4843.1 vs. uniprot
Match: A0A2P4XB74_9STRA (Uncharacterized protein n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XB74_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 7.980e-7
Identity = 27/65 (41.54%), Postives = 44/65 (67.69%), Query Frame = 1 
Query:    1 PSREAEVRLSMLALLECVVKQREVTEETLRPHAECLVRKMVLPNVVWRAGLVAATVRKVTEGVAF 195
            P ++A+VRLS LALLE ++    +++   +  +  L++K ++PN+VWR G VAAT+RKV    A+
Sbjct:  631 PEQDADVRLSFLALLETMLGTDAISQ-AFKTFSVGLLQKAIIPNIVWRGGRVAATIRKVAVACAY 694
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BLAST of mRNA_H-elongata_contig181200.4843.1 vs. uniprot
Match: A0A5D6XR59_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XR59_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 1.340e-5
Identity = 26/64 (40.62%), Postives = 42/64 (65.62%), Query Frame = 1 
Query:    4 SREAEVRLSMLALLECVVKQREVTEETLRPHAECLVRKMVLPNVVWRAGLVAATVRKVTEGVAF 195
            SR+A+VRL+ LALLE ++    + + + RP +  L+   ++PN+VW+ G VAAT+RKV     +
Sbjct:  625 SRDADVRLAFLALLETMLGTDSIFQ-SFRPFSTPLLLNGIIPNIVWQGGRVAATIRKVAVACVY 687
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BLAST of mRNA_H-elongata_contig181200.4843.1 vs. uniprot
Match: A0A1W0A2N6_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A2N6_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 3.420e-5
Identity = 27/59 (45.76%), Postives = 39/59 (66.10%), Query Frame = 1 
Query:    1 PSREAEVRLSMLALLECVVKQREVTEETLRPHAECLVRKMVLPNVVWRAGLVAATVRKV 177
            PS+E +VRL+ LALLE ++    +  +   P A  L+   + PN+VW+AG VAAT+RKV
Sbjct:  604 PSKEPDVRLAFLALLETMLGNT-LMYKAFEPFASKLLINGITPNIVWQAGKVAATIRKV 661
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig181200.4843.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5KK84_9PHAE2.220e-2073.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI57_ECTSI7.760e-2073.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1V9Z755_9STRA8.920e-850.85Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
W2PQ39_PHYPN8.940e-841.54Uncharacterized protein n=43 Tax=Phytophthora TaxI... [more]
A0A225WPQ1_9STRA1.220e-741.54Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A6G0XR12_9STRA5.830e-747.46Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
G4YK90_PHYSP5.840e-740.00Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
A0A2P4XB74_9STRA7.980e-741.54Uncharacterized protein n=2 Tax=Phytophthora palmi... [more]
A0A5D6XR59_9STRA1.340e-540.63Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A1W0A2N6_9STRA3.420e-545.76Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig181200contigH-elongata_contig181200:1050..1262 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score78.2
Seed ortholog evalue1.5e-12
Seed eggNOG ortholog2880.D7FI57
Preferred nameHEATR2
KEGG koko:K19759
GOsGO:0000226,GO:0001539,GO:0001578,GO:0003008,GO:0003341,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007600,GO:0007605,GO:0007610,GO:0007626,GO:0008150,GO:0008344,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0030317,GO:0030534,GO:0032501,GO:0034622,GO:0035082,GO:0036158,GO:0036159,GO:0040011,GO:0043933,GO:0044085,GO:0044424,GO:0044464,GO:0044782,GO:0045505,GO:0048870,GO:0050877,GO:0050954,GO:0051179,GO:0051674,GO:0060271,GO:0060285,GO:0060294,GO:0065003,GO:0070286,GO:0070925,GO:0071840,GO:0097722,GO:0120031,GO:0120036
EggNOG free text desc.inner dynein arm assembly
EggNOG OGs2CMTW@1,2QRXT@2759
Ec32 ortholog descriptionArmadillo-type fold
Ec32 orthologEc-10_003630.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Hectar predicted targeting categoryother localisation
Exons1
Model size213
Cds size183
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930044.5484126-CDS-H-elongata_contig181200:1049..12321622930044.5484126-CDS-H-elongata_contig181200:1049..1232Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig181200 1050..1232 -
1691679259.2296345-CDS-H-elongata_contig181200:1049..12321691679259.2296345-CDS-H-elongata_contig181200:1049..1232Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig181200 1050..1232 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930044.5686896-UTR-H-elongata_contig181200:1232..12621622930044.5686896-UTR-H-elongata_contig181200:1232..1262Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig181200 1233..1262 -
1691679259.2486305-UTR-H-elongata_contig181200:1232..12621691679259.2486305-UTR-H-elongata_contig181200:1232..1262Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig181200 1233..1262 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig181200.4843.1prot_H-elongata_contig181200.4843.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig181200 1050..1232 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig181200.4843.1

>prot_H-elongata_contig181200.4843.1 ID=prot_H-elongata_contig181200.4843.1|Name=mRNA_H-elongata_contig181200.4843.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=61bp
MLALLECVVKQREVTEETLRPHAECLVRKMVLPNVVWRAGLVAATVRKVT
EGVAFGTVFR*
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mRNA from alignment at H-elongata_contig181200:1050..1262-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig181200.4843.1 ID=mRNA_H-elongata_contig181200.4843.1|Name=mRNA_H-elongata_contig181200.4843.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=213bp|location=Sequence derived from alignment at H-elongata_contig181200:1050..1262- (Himanthalia elongata Himel1 dioecious)
CCCTCCAGGGAGGCTGAGGTACGCCTGAGCATGCTGGCGCTGCTGGAGTG
CGTGGTGAAGCAGCGAGAGGTTACGGAGGAGACCCTCCGGCCCCACGCCG
AGTGCCTCGTGAGGAAGATGGTGCTGCCGAACGTCGTGTGGCGCGCCGGC
CTGGTGGCGGCAACGGTTCGAAAGGTAACGGAAGGCGTTGCGTTCGGTAC
CGTTTTTCGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig181200:1050..1262-

>mRNA_H-elongata_contig181200.4843.1 ID=mRNA_H-elongata_contig181200.4843.1|Name=mRNA_H-elongata_contig181200.4843.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=366bp|location=Sequence derived from alignment at H-elongata_contig181200:1050..1262- (Himanthalia elongata Himel1 dioecious)
ATGCTGGCGCTGCTGGAGTGCGTGGTGAAGCAGCGAGAGGTTACGGAGGA
GACCCTCCGGCCCCACGCCGAGTGCCTCGTGAGGAAGATGGTGCTGCCGA
ACGTCGTGTGGCGCGCCGGCCTGGTGGCGGCAACGGTTCGAAAGGTAACG
GAAGGCGTTGCGTTCGGTACCGTTTTTCGGTGAATGCTGGCGCTGCTGGA
GTGCGTGGTGAAGCAGCGAGAGGTTACGGAGGAGACCCTCCGGCCCCACG
CCGAGTGCCTCGTGAGGAAGATGGTGCTGCCGAACGTCGTGTGGCGCGCC
GGCCTGGTGGCGGCAACGGTTCGAAAGGTAACGGAAGGCGTTGCGTTCGG
TACCGTTTTTCGGTGA
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