mRNA_H-elongata_contig18108.4837.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18108.4837.1
Unique NamemRNA_H-elongata_contig18108.4837.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig18108.4837.1 vs. uniprot
Match: D7FRB2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRB2_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 1.910e-36
Identity = 70/121 (57.85%), Postives = 87/121 (71.90%), Query Frame = 1 
Query:   76 NLLSKGVDPAEVAAVAVESRRVDRSSGLTAEEEKVVTDSIVGVLSNLAELRFMLATVVGRTPSIAKYGLLSDYGVTDNAENDPLERMNQVECLLALHMLHKEKRAMSAIDFVDADRLEVLA 438
            ++L K    A  AA A   RR D     T EEE+ VT  + GV S+L ELRFMLAT V RTPSIAKYG+ SDYG+++N ENDPL +MNQ ECLLAL++LHKE    +A+DF+DA+RL+VLA
Sbjct:   11 SVLFKPDTEATGAAAAALERRSDWE--FTEEEERAVTSRVCGVASHLTELRFMLATAVERTPSIAKYGMFSDYGMSENVENDPLAQMNQAECLLALYILHKENAGGAAVDFLDAERLDVLA 129
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BLAST of mRNA_H-elongata_contig18108.4837.1 vs. uniprot
Match: A0A6H5JXH9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXH9_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 2.500e-34
Identity = 70/127 (55.12%), Postives = 88/127 (69.29%), Query Frame = 1 
Query:   55 MITLLAPNLLSKGVDPAEVAAVAVESRRVDRSSGLTAEEEKVVTDSIVGVLSNLAELRFMLATVVGRTPSIAKYGLLSDYGVTDNAENDPLERMNQVECLLALHMLHKEKRAMSAIDFVDADRLEVL 435
            +I  L   L     +    AA A+E RR D     T EEE+ VT  + GV S+L ELRFMLAT V RTPSIAKYG+ SDYG++ N ENDPL +MNQ ECLLAL++LHKE   ++A+DF+DA+RL+VL
Sbjct:  122 VINALVSVLFRPDTEATGAAAAALE-RRSDWE--FTEEEERAVTSRVCGVASHLTELRFMLATAVERTPSIAKYGMFSDYGMSKNVENDPLAQMNQAECLLALYILHKENAGVAAVDFLDAERLDVL 245
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BLAST of mRNA_H-elongata_contig18108.4837.1 vs. uniprot
Match: K0T9B3_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T9B3_THAOC)

HSP 1 Score: 56.2 bits (134), Expect = 1.800e-6
Identity = 41/118 (34.75%), Postives = 58/118 (49.15%), Query Frame = 1 
Query:  157 LTAEEEKVVTDSIVGVLSNLAELRFMLATVVGRTPSIAKYGLLSDYGV----TDNAEND-----------PLERMNQVECLLALHMLHKEKRAM----------SAIDFVDADRLEVL 435
            L   E++ V+  +VGV+  L EL  +L   V     ++KYG    +G+      ++E D           PL RMN+ ECLLAL +   EK  +          S +DF+DADRLEVL
Sbjct:  163 LDTSEQQTVSGRVVGVVMRLPELESLLVDKVKGVGWVSKYGEEESFGLLRSEVKDSEGDSGQLAEQLQLNPLLRMNRAECLLALFIDTVEKPQLERIGQRVPDSSRVDFIDADRLEVL 280
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18108.4837.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FRB2_ECTSI1.910e-3657.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JXH9_9PHAE2.500e-3455.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
K0T9B3_THAOC1.800e-634.75Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18108contigH-elongata_contig18108:3608..4551 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score132.9
Seed ortholog evalue1.3e-28
Seed eggNOG ortholog2880.D7FRB2
EggNOG OGs2EWVJ@1,2SYMA@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size456
Cds size456
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930044.0579236-CDS-H-elongata_contig18108:3607..38611622930044.0579236-CDS-H-elongata_contig18108:3607..3861Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18108 3608..3861 +
1691679259.062242-CDS-H-elongata_contig18108:3607..38611691679259.062242-CDS-H-elongata_contig18108:3607..3861Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18108 3608..3861 +
1622930044.0785213-CDS-H-elongata_contig18108:4349..45511622930044.0785213-CDS-H-elongata_contig18108:4349..4551Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18108 4350..4551 +
1691679259.0731628-CDS-H-elongata_contig18108:4349..45511691679259.0731628-CDS-H-elongata_contig18108:4349..4551Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18108 4350..4551 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18108.4837.1prot_H-elongata_contig18108.4837.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18108 3608..4551 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18108.4837.1

>prot_H-elongata_contig18108.4837.1 ID=prot_H-elongata_contig18108.4837.1|Name=mRNA_H-elongata_contig18108.4837.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=152bp
MTTSPDPPAPPPSVLLIPMITLLAPNLLSKGVDPAEVAAVAVESRRVDRS
SGLTAEEEKVVTDSIVGVLSNLAELRFMLATVVGRTPSIAKYGLLSDYGV
TDNAENDPLERMNQVECLLALHMLHKEKRAMSAIDFVDADRLEVLAERPP
T*
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mRNA from alignment at H-elongata_contig18108:3608..4551+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18108.4837.1 ID=mRNA_H-elongata_contig18108.4837.1|Name=mRNA_H-elongata_contig18108.4837.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=944bp|location=Sequence derived from alignment at H-elongata_contig18108:3608..4551+ (Himanthalia elongata Himel1 dioecious)
ATGACCACCTCTCCCGACCCCCCTGCCCCACCCCCCTCGGTGCTGTTGAT
ACCAATGATCACACTCCTGGCGCCTAATCTCTTGTCAAAGGGGGTGGACC
CAGCTGAAGTTGCGGCCGTTGCAGTTGAAAGCCGCAGAGTCGATCGAAGC
TCGGGTCTTACGGCGGAGGAAGAGAAAGTCGTTACCGACAGCATAGTTGG
AGTATTGTCGAATTTGGCGGAGCTGCGCTTCATGCTAGCTACCGTGGTGG
GAAGGTGGGTTCGCCGAGAAGAGGGTCGTGGGAAAAGGGACTACTGGAAG
GGGATGCCAGGATCCCGTTCCATACGAACCGTTGTTCCGCTATGATGCGT
TGCACCGAGGCGCTGGATCAATGTCGCACTTCCACCGGGCCAGCCGGTTC
TGCCCAATCACTAAGCTGACCTTAATCGTTATTCGGAAATGAACATCTGC
CTTGGCTAGCGATGGCTGCTTTGCTTTGTTCGCAGACGCTGAACTAGAAG
CTAGCGGTGTAACAGGGTGCACGTAATTCATGCAAACGAAACTCCGAAGC
TTGCACAGTACCGAGGTTGCGAATATATTGTCCCGCGCGCCGTTAAACGG
CAATTTGTCTCCATCGGCTCATAATCCTGACTTGCCCACCCGCTCGCTGT
CTTCCCCATTTTTTTGACACCGTGCGCTGCGCCCACTTGTGTCGTCGTTC
TGGACTGTAACGAACGGCTTACGGCTTCCAAACACCCTTAAGGACGCCGT
CCATCGCGAAGTATGGCTTGCTCTCGGACTACGGCGTGACTGATAACGCT
GAAAACGACCCCTTGGAGCGAATGAACCAAGTGGAATGCCTACTGGCGCT
ACACATGCTGCACAAAGAGAAGCGAGCGATGTCCGCGATTGACTTCGTGG
ACGCTGACAGACTTGAGGTGTTGGCGGAGAGGCCGCCGACGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig18108:3608..4551+

>mRNA_H-elongata_contig18108.4837.1 ID=mRNA_H-elongata_contig18108.4837.1|Name=mRNA_H-elongata_contig18108.4837.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=912bp|location=Sequence derived from alignment at H-elongata_contig18108:3608..4551+ (Himanthalia elongata Himel1 dioecious)
ATGACCACCTCTCCCGACCCCCCTGCCCCACCCCCCTCGGTGCTGTTGAT
ACCAATGATCACACTCCTGGCGCCTAATCTCTTGTCAAAGGGGGTGGACC
CAGCTGAAGTTGCGGCCGTTGCAGTTGAAAGCCGCAGAGTCGATCGAAGC
TCGGGTCTTACGGCGGAGGAAGAGAAAGTCGTTACCGACAGCATAGTTGG
AGTATTGTCGAATTTGGCGGAGCTGCGCTTCATGCTAGCTACCGTGGTGG
GAAGATGACCACCTCTCCCGACCCCCCTGCCCCACCCCCCTCGGTGCTGT
TGATACCAATGATCACACTCCTGGCGCCTAATCTCTTGTCAAAGGGGGTG
GACCCAGCTGAAGTTGCGGCCGTTGCAGTTGAAAGCCGCAGAGTCGATCG
AAGCTCGGGTCTTACGGCGGAGGAAGAGAAAGTCGTTACCGACAGCATAG
TTGGAGTATTGTCGAATTTGGCGGAGCTGCGCTTCATGCTAGCTACCGTG
GTGGGAAGGACGCCGTCCATCGCGAAGTATGGCTTGCTCTCGGACTACGG
CGTGACTGATAACGCTGAAAACGACCCCTTGGAGCGAATGAACCAAGTGG
AATGCCTACTGGCGCTACACATGCTGCACAAAGAGAAGCGAGCGATGTCC
GCGATTGACTTCGTGGACGCTGACAGACTTGAGGTGTTGGCGGAGAGGCC
GCCGACGTGAGACGCCGTCCATCGCGAAGTATGGCTTGCTCTCGGACTAC
GGCGTGACTGATAACGCTGAAAACGACCCCTTGGAGCGAATGAACCAAGT
GGAATGCCTACTGGCGCTACACATGCTGCACAAAGAGAAGCGAGCGATGT
CCGCGATTGACTTCGTGGACGCTGACAGACTTGAGGTGTTGGCGGAGAGG
CCGCCGACGTGA
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