mRNA_H-elongata_contig180882.4828.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig180882.4828.1
Unique NamemRNA_H-elongata_contig180882.4828.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig180882.4828.1 vs. uniprot
Match: D7G8X7_ECTSI (UBC core domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8X7_ECTSI)

HSP 1 Score: 145 bits (366), Expect = 3.360e-43
Identity = 64/70 (91.43%), Postives = 69/70 (98.57%), Query Frame = 1
Query:    7 ENTPFSGGCFNLEIEFPAEYPFKAPKVKFVTRIYHPNVKTDTGEICSDILNENWGPTLNVTYVLNTIRQV 216
            ++TPF GGCFNLEIEFPAEYPFKAPKV+FVTRIYHPNVKTD+GEICSDILNENWGPTLNVTYVLNTIRQ+
Sbjct:   40 DDTPFGGGCFNLEIEFPAEYPFKAPKVRFVTRIYHPNVKTDSGEICSDILNENWGPTLNVTYVLNTIRQM 109          
BLAST of mRNA_H-elongata_contig180882.4828.1 vs. uniprot
Match: A0A6V1MVK4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1MVK4_HETAK)

HSP 1 Score: 127 bits (319), Expect = 4.600e-36
Identity = 52/69 (75.36%), Postives = 63/69 (91.30%), Query Frame = 1
Query:   10 NTPFSGGCFNLEIEFPAEYPFKAPKVKFVTRIYHPNVKTDTGEICSDILNENWGPTLNVTYVLNTIRQV 216
            NTP+ GG FNLE++FPAEYPFKAPKVKF+TRIYHPN+KTD+GEIC+D++NENWGPTLN  YVL  I+Q+
Sbjct:   41 NTPYEGGVFNLELDFPAEYPFKAPKVKFLTRIYHPNIKTDSGEICADLINENWGPTLNTQYVLTVIKQL 109          
BLAST of mRNA_H-elongata_contig180882.4828.1 vs. uniprot
Match: A0A835YRR6_9STRA (Ubiquitin-conjugating enzyme/RWD-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRR6_9STRA)

HSP 1 Score: 122 bits (306), Expect = 4.350e-34
Identity = 52/70 (74.29%), Postives = 62/70 (88.57%), Query Frame = 1
Query:    7 ENTPFSGGCFNLEIEFPAEYPFKAPKVKFVTRIYHPNVKTDTGEICSDILNENWGPTLNVTYVLNTIRQV 216
            + TP+ GG FN+ +EFPAEYPFKAPKVKF TRIYHP+V+T TGEIC+D+L  NWGPTLNVT+VLNTIRQ+
Sbjct:   40 DGTPYEGGIFNISLEFPAEYPFKAPKVKFQTRIYHPHVRTATGEICADVLLNNWGPTLNVTFVLNTIRQM 109          
BLAST of mRNA_H-elongata_contig180882.4828.1 vs. uniprot
Match: G4YF85_PHYSP (UBC core domain-containing protein n=17 Tax=Peronosporaceae TaxID=4777 RepID=G4YF85_PHYSP)

HSP 1 Score: 119 bits (298), Expect = 7.140e-33
Identity = 47/70 (67.14%), Postives = 64/70 (91.43%), Query Frame = 1
Query:    7 ENTPFSGGCFNLEIEFPAEYPFKAPKVKFVTRIYHPNVKTDTGEICSDILNENWGPTLNVTYVLNTIRQV 216
            E++P+SGG FNL+++FP+EYPFKAPKV+F+TR+YHPNVK+ +GEIC+DI+NENWGPTLNV + L  I+Q+
Sbjct:   40 EDSPYSGGVFNLDLQFPSEYPFKAPKVRFLTRVYHPNVKSQSGEICADIINENWGPTLNVLHCLTAIKQI 109          
BLAST of mRNA_H-elongata_contig180882.4828.1 vs. uniprot
Match: A0A835Z9K8_9STRA (Ubiquitin-conjugating enzyme/RWD-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9K8_9STRA)

HSP 1 Score: 118 bits (296), Expect = 1.440e-32
Identity = 48/70 (68.57%), Postives = 64/70 (91.43%), Query Frame = 1
Query:    7 ENTPFSGGCFNLEIEFPAEYPFKAPKVKFVTRIYHPNVKTDTGEICSDILNENWGPTLNVTYVLNTIRQV 216
            +N+P++GG F L+IE   EYPFKAPKVKF+TRIYHPN++T+ GEIC+DILN+NWGPTLN+++VLNT+RQ+
Sbjct:   40 DNSPYAGGVFQLDIEMSPEYPFKAPKVKFLTRIYHPNIRTEGGEICADILNDNWGPTLNLSHVLNTLRQM 109          
BLAST of mRNA_H-elongata_contig180882.4828.1 vs. uniprot
Match: H3G6N1_PHYRM (UBC core domain-containing protein n=8 Tax=Phytophthora TaxID=4783 RepID=H3G6N1_PHYRM)

HSP 1 Score: 117 bits (292), Expect = 1.760e-32
Identity = 46/68 (67.65%), Postives = 62/68 (91.18%), Query Frame = 1
Query:   13 TPFSGGCFNLEIEFPAEYPFKAPKVKFVTRIYHPNVKTDTGEICSDILNENWGPTLNVTYVLNTIRQV 216
            +P+SGG FNL+++FP+EYPFKAPKV+F+TR+YHPNVK+ +GEIC+DI+NENWGPTLNV + L  I+Q+
Sbjct:    1 SPYSGGVFNLDLQFPSEYPFKAPKVRFLTRVYHPNVKSQSGEICADIINENWGPTLNVMHCLTAIKQI 68          
BLAST of mRNA_H-elongata_contig180882.4828.1 vs. uniprot
Match: A0A024U3D9_9STRA (UBC core domain-containing protein n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A024U3D9_9STRA)

HSP 1 Score: 116 bits (290), Expect = 1.170e-31
Identity = 46/70 (65.71%), Postives = 63/70 (90.00%), Query Frame = 1
Query:    7 ENTPFSGGCFNLEIEFPAEYPFKAPKVKFVTRIYHPNVKTDTGEICSDILNENWGPTLNVTYVLNTIRQV 216
            ENTP++GG F++++ FPAEYPFKAPKVKF+TR+YHPNVK+ +GEIC+DI+NE+WGPTLNV + L  ++Q+
Sbjct:   40 ENTPYAGGVFSIDLVFPAEYPFKAPKVKFLTRVYHPNVKSQSGEICADIINESWGPTLNVLHCLTALKQM 109          
BLAST of mRNA_H-elongata_contig180882.4828.1 vs. uniprot
Match: K3W7Y2_GLOUD (UBC core domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W7Y2_GLOUD)

HSP 1 Score: 116 bits (290), Expect = 1.170e-31
Identity = 45/70 (64.29%), Postives = 63/70 (90.00%), Query Frame = 1
Query:    7 ENTPFSGGCFNLEIEFPAEYPFKAPKVKFVTRIYHPNVKTDTGEICSDILNENWGPTLNVTYVLNTIRQV 216
            EN+P+SGG F+++++FP EYPFKAP+V+F+TR+YHPNVK+ +GEIC+DI+NENWGPTLNV + L  I+Q+
Sbjct:   40 ENSPYSGGVFSIDLQFPNEYPFKAPRVRFLTRVYHPNVKSQSGEICADIINENWGPTLNVLHCLTAIKQI 109          
BLAST of mRNA_H-elongata_contig180882.4828.1 vs. uniprot
Match: A0A067CHA9_SAPPC (UBC core domain-containing protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CHA9_SAPPC)

HSP 1 Score: 115 bits (289), Expect = 1.660e-31
Identity = 44/70 (62.86%), Postives = 63/70 (90.00%), Query Frame = 1
Query:    7 ENTPFSGGCFNLEIEFPAEYPFKAPKVKFVTRIYHPNVKTDTGEICSDILNENWGPTLNVTYVLNTIRQV 216
            +N+P++GG F++++ FPAEYPFKAPKVKF+TR+YHPNVK+ +GEIC+D++NENWGPTLNV + L  ++Q+
Sbjct:   40 DNSPYAGGVFSIDLLFPAEYPFKAPKVKFLTRVYHPNVKSQSGEICADVINENWGPTLNVMFCLTALKQI 109          
BLAST of mRNA_H-elongata_contig180882.4828.1 vs. uniprot
Match: A0A2D4CAW9_PYTIN (UBC core domain-containing protein n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4CAW9_PYTIN)

HSP 1 Score: 113 bits (283), Expect = 1.360e-30
Identity = 43/70 (61.43%), Postives = 62/70 (88.57%), Query Frame = 1
Query:    7 ENTPFSGGCFNLEIEFPAEYPFKAPKVKFVTRIYHPNVKTDTGEICSDILNENWGPTLNVTYVLNTIRQV 216
            E++P+SGG F+L+++FP EYPFKAPK++F+T++YHPN+KT +GEIC+DI+NENW PTLNV + L  I+Q+
Sbjct:   40 EDSPYSGGVFSLDLQFPNEYPFKAPKIRFLTKVYHPNIKTSSGEICADIINENWAPTLNVLHCLQAIKQI 109          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig180882.4828.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8X7_ECTSI3.360e-4391.43UBC core domain-containing protein n=2 Tax=Ectocar... [more]
A0A6V1MVK4_HETAK4.600e-3675.36Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835YRR6_9STRA4.350e-3474.29Ubiquitin-conjugating enzyme/RWD-like protein n=1 ... [more]
G4YF85_PHYSP7.140e-3367.14UBC core domain-containing protein n=17 Tax=Perono... [more]
A0A835Z9K8_9STRA1.440e-3268.57Ubiquitin-conjugating enzyme/RWD-like protein n=1 ... [more]
H3G6N1_PHYRM1.760e-3267.65UBC core domain-containing protein n=8 Tax=Phytoph... [more]
A0A024U3D9_9STRA1.170e-3165.71UBC core domain-containing protein n=4 Tax=Aphanom... [more]
K3W7Y2_GLOUD1.170e-3164.29UBC core domain-containing protein n=1 Tax=Globisp... [more]
A0A067CHA9_SAPPC1.660e-3162.86UBC core domain-containing protein n=4 Tax=Saprole... [more]
A0A2D4CAW9_PYTIN1.360e-3061.43UBC core domain-containing protein n=2 Tax=Pythium... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig180882contigH-elongata_contig180882:98..1212 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score145.6
Seed ortholog evalue9.4e-33
Seed eggNOG ortholog2880.D7G8X7
Preferred nameubcB
KEGG koko:K13280
KEGG Pathwayko03060,map03060
GOsGO:0003674,GO:0003824,GO:0004842,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009653,GO:0009987,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0032446,GO:0032502,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0048856,GO:0070647,GO:0071704,GO:0140096,GO:1901564
EggNOG free text desc.protein modification by small protein conjugation
EggNOG OGsCOG5078@1,KOG0417@2759
EC3.4.21.89
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionUbiquitin-conjugating enzyme/RWD-like
Ec32 orthologEc-15_004630.1
Exons2
Model size225
Cds size225
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930043.234813-CDS-H-elongata_contig180882:97..2381622930043.234813-CDS-H-elongata_contig180882:97..238Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig180882 98..238 -
1691679258.763324-CDS-H-elongata_contig180882:97..2381691679258.763324-CDS-H-elongata_contig180882:97..238Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig180882 98..238 -
1622930043.2529547-CDS-H-elongata_contig180882:1128..12121622930043.2529547-CDS-H-elongata_contig180882:1128..1212Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig180882 1129..1212 -
1691679258.7743797-CDS-H-elongata_contig180882:1128..12121691679258.7743797-CDS-H-elongata_contig180882:1128..1212Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig180882 1129..1212 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig180882.4828.1prot_H-elongata_contig180882.4828.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig180882 98..1212 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig180882.4828.1

>prot_H-elongata_contig180882.4828.1 ID=prot_H-elongata_contig180882.4828.1|Name=mRNA_H-elongata_contig180882.4828.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=75bp
MQENTPFSGGCFNLEIEFPAEYPFKAPKVKFVTRIYHPNVKTDTGEICSD
ILNENWGPTLNVTYVLNTIRQVSF*
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mRNA from alignment at H-elongata_contig180882:98..1212-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig180882.4828.1 ID=mRNA_H-elongata_contig180882.4828.1|Name=mRNA_H-elongata_contig180882.4828.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1115bp|location=Sequence derived from alignment at H-elongata_contig180882:98..1212- (Himanthalia elongata Himel1 dioecious)
ATGCAGGAGAACACTCCTTTCAGCGGAGGGTGCTTCAACCTGGAAATTGA GTTCCCCGCCGAGTACCCCTTCAAGGCGCCAAAGGTACGGCGAGGCTGAC TCAGGCTTTAATTAATCAGGGCATGATCTGAACTCCTCTCGAGAATGTTG GAACGCACTTTTCTTAACTTTCCTACTTGTGCCTCGAATCCAGTGGAGAT AATACTAAGAGATACTAAGGTACTCTAACGTAAAGTAATAATGCACCTCT CATGGTGCTAAGAAGGCGTGGGATGTTCGGAGGGCTAGAATGAGTTCAAG TTTTTAGAAAATAAAAATAATGGTGTAACGGTCATAACGGTCACGCGAAA ATAAGAACACATATTTGTTGCCTTGGTTTAACGGAATAACCTTTAAAACC TTTGCTACCTACAAAGGCTTTGCGACCTTTAAAAGCTTGACGGTGTAATA TGCGTCAGATAGCCCCCAATCTCCAATTTCCGCCGTTTCTTTGAACCATT TTTGCTTCAAGGCTCATGTCTTGCATGAGGCGGGGGTTTGGCGTGTCCTT CTTATCACAGCTTTGACTGTTTCTAGCCTGCAACCTCTTTGCCATGTCTC TGCTGCCATCGCAATGACCTCGATGAGTAACGAGCGAGGACGTTATCATC CGATATCCTTCTTGCCCTTGAGGGAAGTCTGGTGTTGCTTGTATCGCAAG ATAAGGGAGGGACCCGAGGCAGAGCCCGCCTCCCCACCCCACCACCGTTT CATCCTCCCGAGGAGGCGTGGTCAATGGTCCTAAGGCCAAAACTCATGGC CGGCAGACATGAACAGTGTCGTGGAGATTGTCGGTCAATTCTTGGATTCC CCTCAAATGCCCACGTCGTTACGTGGCAAGTCGCTCTCGACAACCCCGAT GTGAGCCCACTACGTACTCTCCTTGCCTTAACTTGCCTCGCCTTGCTTTA CCACACGGTTGGCGTCGACCGCAGGTAAAGTTTGTGACCCGCATCTACCA CCCAAATGTCAAGACTGACACGGGGGAGATCTGCTCGGATATCCTCAACG AGAACTGGGGACCCACTCTCAATGTGACCTACGTCCTGAACACCATCCGT CAGGTGAGCTTTTAA
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Coding sequence (CDS) from alignment at H-elongata_contig180882:98..1212-

>mRNA_H-elongata_contig180882.4828.1 ID=mRNA_H-elongata_contig180882.4828.1|Name=mRNA_H-elongata_contig180882.4828.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=450bp|location=Sequence derived from alignment at H-elongata_contig180882:98..1212- (Himanthalia elongata Himel1 dioecious)
ATGCAGGAGAACACTCCTTTCAGCGGAGGGTGCTTCAACCTGGAAATTGA
GTTCCCCGCCGAGTACCCCTTCAAGGCGCCAAAGATGCAGGAGAACACTC
CTTTCAGCGGAGGGTGCTTCAACCTGGAAATTGAGTTCCCCGCCGAGTAC
CCCTTCAAGGCGCCAAAGGTAAAGTTTGTGACCCGCATCTACCACCCAAA
TGTCAAGACTGACACGGGGGAGATCTGCTCGGATATCCTCAACGAGAACT
GGGGACCCACTCTCAATGTGACCTACGTCCTGAACACCATCCGTCAGGTG
AGCTTTTAAGTAAAGTTTGTGACCCGCATCTACCACCCAAATGTCAAGAC
TGACACGGGGGAGATCTGCTCGGATATCCTCAACGAGAACTGGGGACCCA
CTCTCAATGTGACCTACGTCCTGAACACCATCCGTCAGGTGAGCTTTTAA
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