mRNA_H-elongata_contig18041.4803.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18041.4803.1
Unique NamemRNA_H-elongata_contig18041.4803.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig18041.4803.1 vs. uniprot
Match: A0A6H5K771_9PHAE (PIPK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K771_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 2.430e-15
Identity = 53/148 (35.81%), Postives = 71/148 (47.97%), Query Frame = 3 
Query:    6 PIMSSSLGVDFGVKTPYAWLPRVENVPASSASAPGT---------------------PAEKSSRKFAETADMGRGGGTGGGLVRSPLVAGGYHFLCSNQNLMTTQLWMKQETQCRSAHLETFRYYHAEKDKALGQFLEETCFNAPAKC 386
            P++SSSLGVDFG   P+  L + +N   ++A+  G+                              +    +GRGG +GG       V G  HF    QN+M T LWM Q TQC +A L+ FRYY  + D ALG+FL + CFN   KC
Sbjct:  212 PVLSSSLGVDFGESPPFLQLSKGKNSAPAAAAVEGSGMTXXXXXXXXXXXXXXXXXXXXXXXXXXXSTMVGIGRGGSSGG----RGYVYGAEHFAYQTQNMMITSLWMTQGTQCCNADLKFFRYYKHKHDTALGKFLVDNCFNPNLKC 355
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18041.4803.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K771_9PHAE2.430e-1535.81PIPK domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18041contigH-elongata_contig18041:4023..5017 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.2
Seed ortholog evalue3.2e-09
Seed eggNOG ortholog2880.D7G3Z3
KEGG rclassRC00002,RC00078
KEGG koko:K00921
KEGG ReactionR05802,R10951
KEGG Pathwayko00562,ko04070,ko04145,ko04810,map00562,map04070,map04145,map04810
EggNOG free text desc.Translation initiation factor IF-2, N-terminal region
EggNOG OGsCOG5253@1,KOG0230@2759
EC2.7.1.150
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size386
Cds size375
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18041.4803.1prot_H-elongata_contig18041.4803.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18041 4023..5006 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930040.803488-CDS-H-elongata_contig18041:4022..40791622930040.803488-CDS-H-elongata_contig18041:4022..4079Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18041 4023..4079 -
1691679257.7900848-CDS-H-elongata_contig18041:4022..40791691679257.7900848-CDS-H-elongata_contig18041:4022..4079Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18041 4023..4079 -
1622930040.8295894-CDS-H-elongata_contig18041:4688..50061622930040.8295894-CDS-H-elongata_contig18041:4688..5006Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18041 4689..5006 -
1691679257.8078775-CDS-H-elongata_contig18041:4688..50061691679257.8078775-CDS-H-elongata_contig18041:4688..5006Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18041 4689..5006 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930040.8663342-UTR-H-elongata_contig18041:5006..50171622930040.8663342-UTR-H-elongata_contig18041:5006..5017Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18041 5007..5017 -
1691679257.818812-UTR-H-elongata_contig18041:5006..50171691679257.818812-UTR-H-elongata_contig18041:5006..5017Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18041 5007..5017 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18041.4803.1

>prot_H-elongata_contig18041.4803.1 ID=prot_H-elongata_contig18041.4803.1|Name=mRNA_H-elongata_contig18041.4803.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=125bp
MSSSLGVDFGVKTPYAWLPRVENVPASSASAPGTPAEKSSRKFAETADMG
RGGGTGGGLVRSPLVAGGYHFLCSNQNLMTTQLWMKQETQCRSAHLETFR
YYHAEKDKALGQFLEETCFNAPAKC
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mRNA from alignment at H-elongata_contig18041:4023..5017-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18041.4803.1 ID=mRNA_H-elongata_contig18041.4803.1|Name=mRNA_H-elongata_contig18041.4803.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=995bp|location=Sequence derived from alignment at H-elongata_contig18041:4023..5017- (Himanthalia elongata Himel1 dioecious)
AGGCGCCCATTATGTCGTCTTCGCTGGGTGTCGATTTTGGCGTGAAGACA
CCCTACGCGTGGCTGCCGAGAGTCGAGAACGTTCCCGCGTCCAGCGCCTC
AGCCCCTGGAACACCTGCGGAGAAATCCTCGAGAAAGTTCGCAGAAACGG
CGGACATGGGAAGGGGCGGTGGCACTGGCGGCGGGCTAGTGAGAAGCCCG
CTCGTCGCGGGGGGGTATCATTTCCTGTGCTCGAACCAAAATCTGATGAC
CACGCAATTGTGGATGAAGCAGGAAACCCAGTGTCGGTCTGCTCACCTGG
AAACCTTCCGCTACTACCACGCCGAGAAGGTTAGAGACGCGCCTAGAGCC
GCTAGCTGCTGCCTGCGCCAGCCATGGAAACTGTGAAATTTGTTGTTGTT
TCGGTACGTGACAACACTCCTGTTCAACTGCAACACTTAACTATTATAGG
AGAATACTGTAGCTGGTACGTTTGGCGGCGGGACGTTCGACAAGGAGGAC
GCGTAGATTCCATCAGCGTTGATGGGAAAAGGGGTATCGTTGACCGGGGG
AAAATTACCACACACACGCGCGCACATACACGCATGTCATACATCATAGA
TCTCGACGATGACGTCTCGCGTGAAGGAAGCACCACACGCGCTTTGACGA
TGGTATGCCTTCACACACACCTTGCCCTGTTACAGCGCTCTTTTTTTTGT
TCTCCCGCAGACGGATCAAAGGTCAATGCCGTCTCCTTTGGCGAGGCAAA
CGAAGAAGACCGAGTTTCACTCGTTGCGTGTGTTGTAGACAGACGTTCGA
CGTAAACCGACCCCTCTCCCCCCTCCTCCGATACCACGTAATAACATGTC
TATGTAAACCACACCCCACCGTGTTCTTCGGTACTTACCCCACCGGCTAA
ATAACGCACTGTTTTTTTGGGGGGGGACGCGTCTTCAGGACAAAGCGCTT
GGGCAGTTCCTTGAGGAGACGTGCTTCAACGCTCCCGCGAAGTGC
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Coding sequence (CDS) from alignment at H-elongata_contig18041:4023..5017-

>mRNA_H-elongata_contig18041.4803.1 ID=mRNA_H-elongata_contig18041.4803.1|Name=mRNA_H-elongata_contig18041.4803.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=750bp|location=Sequence derived from alignment at H-elongata_contig18041:4023..5017- (Himanthalia elongata Himel1 dioecious)
ATGTCGTCTTCGCTGGGTGTCGATTTTGGCGTGAAGACACCCTACGCGTG
GCTGCCGAGAGTCGAGAACGTTCCCGCGTCCAGCGCCTCAGCCCCTGGAA
CACCTGCGGAGAAATCCTCGAGAAAGTTCGCAGAAACGGCGGACATGGGA
AGGGGCGGTGGCACTGGCGGCGGGCTAGTGAGAAGCCCGCTCGTCGCGGG
GGGGTATCATTTCCTGTGCTCGAACCAAAATCTGATGACCACGCAATTGT
GGATGAAGCAGGAAACCCAGTGTCGGTCTGCTCACCTGGAAACCTTCCGC
TACTACCACGCCGAGAAGATGTCGTCTTCGCTGGGTGTCGATTTTGGCGT
GAAGACACCCTACGCGTGGCTGCCGAGAGTCGAGAACGTTCCCGCGTCCA
GCGCCTCAGCCCCTGGAACACCTGCGGAGAAATCCTCGAGAAAGTTCGCA
GAAACGGCGGACATGGGAAGGGGCGGTGGCACTGGCGGCGGGCTAGTGAG
AAGCCCGCTCGTCGCGGGGGGGTATCATTTCCTGTGCTCGAACCAAAATC
TGATGACCACGCAATTGTGGATGAAGCAGGAAACCCAGTGTCGGTCTGCT
CACCTGGAAACCTTCCGCTACTACCACGCCGAGAAGGACAAAGCGCTTGG
GCAGTTCCTTGAGGAGACGTGCTTCAACGCTCCCGCGAAGTGCGACAAAG
CGCTTGGGCAGTTCCTTGAGGAGACGTGCTTCAACGCTCCCGCGAAGTGC
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