mRNA_H-elongata_contig1799.4781.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1799.4781.1
Unique NamemRNA_H-elongata_contig1799.4781.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig1799.4781.1 vs. uniprot
Match: A0A6H5JB40_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB40_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 1.340e-6
Identity = 46/162 (28.40%), Postives = 73/162 (45.06%), Query Frame = 1 
Query:  244 LFALAIKSCNTRMVKWVAGLINRNYPDSKEAWDRLRGHKAEKSSLAYAASTPPTAKNNGEHMFDTVLWCLKKAAGNMYDDQRLEGTNPRPTKKEYVNALLRRELAV----TREPRVRGKLSQVSPLGGAMLQSNQVLFRRVYDTYVECGG-RWNRQQVLDQL 714
            LF  A+ S     V WV   + + YP  KE W  +RG + + ++L  A+S+    +  G  +   V  CL++AA       + E   P    K      L R L +    ++        S  +PL GA L  N VLF+++Y+ Y      RW+R+++L  L
Sbjct:  445 LFGQAVLSGKAEAVLWVYQFLAQRYP--KELWKNVRGAQDKINALTCASSSSMKCERQGVEVLVAVYSCLQEAA-------KYEFGTPEDVTKNLKELFLSRSLPMKPTGSKSSARTTVESSSTPLAGAALSGNWVLFQKIYEMYERLTDQRWSREELLRHL 597
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1799.4781.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JB40_9PHAE1.340e-628.40Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1799contigH-elongata_contig1799:6355..7985 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.0
Seed ortholog evalue1e-11
Seed eggNOG ortholog2880.D8LH99
EggNOG free text desc.calcium ion transmembrane transport
EggNOG OGsKOG3676@1,KOG3676@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorymitochondrion
Exons5
Model size725
Cds size567
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1799.4781.1prot_H-elongata_contig1799.4781.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1799 6511..7985 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930037.682938-UTR-H-elongata_contig1799:6354..65101622930037.682938-UTR-H-elongata_contig1799:6354..6510Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1799 6355..6510 +
1691679256.6589775-UTR-H-elongata_contig1799:6354..65101691679256.6589775-UTR-H-elongata_contig1799:6354..6510Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1799 6355..6510 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930037.6940117-CDS-H-elongata_contig1799:6510..65891622930037.6940117-CDS-H-elongata_contig1799:6510..6589Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1799 6511..6589 +
1691679256.670042-CDS-H-elongata_contig1799:6510..65891691679256.670042-CDS-H-elongata_contig1799:6510..6589Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1799 6511..6589 +
1622930037.7115216-CDS-H-elongata_contig1799:6612..67101622930037.7115216-CDS-H-elongata_contig1799:6612..6710Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1799 6613..6710 +
1691679256.6793919-CDS-H-elongata_contig1799:6612..67101691679256.6793919-CDS-H-elongata_contig1799:6612..6710Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1799 6613..6710 +
1622930037.7236748-CDS-H-elongata_contig1799:6876..70021622930037.7236748-CDS-H-elongata_contig1799:6876..7002Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1799 6877..7002 +
1691679256.689201-CDS-H-elongata_contig1799:6876..70021691679256.689201-CDS-H-elongata_contig1799:6876..7002Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1799 6877..7002 +
1622930037.7389019-CDS-H-elongata_contig1799:7272..75121622930037.7389019-CDS-H-elongata_contig1799:7272..7512Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1799 7273..7512 +
1691679256.702308-CDS-H-elongata_contig1799:7272..75121691679256.702308-CDS-H-elongata_contig1799:7272..7512Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1799 7273..7512 +
1622930037.7586765-CDS-H-elongata_contig1799:7961..79851622930037.7586765-CDS-H-elongata_contig1799:7961..7985Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1799 7962..7985 +
1691679256.7142575-CDS-H-elongata_contig1799:7961..79851691679256.7142575-CDS-H-elongata_contig1799:7961..7985Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1799 7962..7985 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1799.4781.1

>prot_H-elongata_contig1799.4781.1 ID=prot_H-elongata_contig1799.4781.1|Name=mRNA_H-elongata_contig1799.4781.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=189bp
MLPRRFVVRSIPPTQTIMLIARRCYRRKCLFALAIKSCNTRMVKWVAGLI
NRNYPDSKEAWDRLRGHKAEKSSLAYAASTPPTAKNNGEHMFDTVLWCLK
KAAGNMYDDQRLEGTNPRPTKKEYVNALLRRELAVTREPRVRGKLSQVSP
LGGAMLQSNQVLFRRVYDTYVECGGRWNRQQVLDQLREE
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mRNA from alignment at H-elongata_contig1799:6355..7985+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1799.4781.1 ID=mRNA_H-elongata_contig1799.4781.1|Name=mRNA_H-elongata_contig1799.4781.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1631bp|location=Sequence derived from alignment at H-elongata_contig1799:6355..7985+ (Himanthalia elongata Himel1 dioecious)
CAAGAGGTCAACGCTACTCCAGCCTGACGGACTTGCAGTTCCTTGACGCA
GCGATGGGCATTAACGATGTCGACGTAGATAGCCCCATCAGGAACCGCAG
GCGAGGAATGTTACTGGAGGAGGCTGCTGCAGGCGGGAATCTGGACGTAC
TACAACATGTTACCTCGGAGATTTGTAGTAAGGTCGATACCTCCGACACA
AACGATCATGTTGATTGCCCGACGCTGTTACAGGCGCTAGAGACCATCAA
CGAGAGAGGCAAGTGTCTCTTCGCGTTGGCCATCAAATCATGCAATACAC
GAATGGTGAAGTGGGTTGCCGGACTCATCAACCGCAACTACCCGGACAGC
AAAGAGGTGAGTCCCCGACTTGAACACCTTCGGCCGTATGGAACTTTGGT
GCCGAATCTTGCCGAAGACCAGAAACCGAATGCTTTTGGAGCACAAAAAA
CGTCATCCCACGGTCAAAACACTGCAGTGTAGACTACAACTTAAACCCTG
GTACACGAAACTCAACACGTAGGCTTGGGATCGACTCCGTGGCCACAAGG
CCGAGAAAAGCTCGTTGGCATACGCGGCGTCGACACCACCTACTGCCAAG
AATAACGGAGAGCATATGTTTGACACAGTTCTCTGGTGTCTAAAGAAGGT
GAGATTGTCTTCCACTGGTAAAGCACACGCATTGCGGTGCTGGCCGGTCA
TAGAAGGATCGAGCTATGTTAAATGGTCACTACGGGAATGCTCTTGAAGA
GGGTGTTTTGATCGACTTAGTGATACAAAAAAATGGCTTCGCTTTTTGGA
GTGTGAAAAGCATCTCAGGGCCGTTCGCCTTCACGGGGTACACTGATTTT
TCCTACCATCGGTAAATTGTGCCGTGTACTGTTATCAGACTATTACTTGT
GCCGACCTATGGTTGCAGGCGGCCGGAAATATGTATGACGACCAAAGGCT
TGAAGGGACTAACCCCAGGCCAACAAAGAAGGAATACGTAAATGCGCTTC
TGCGAAGAGAATTAGCTGTGACCAGGGAGCCGAGGGTCCGAGGTAAGCTA
TCACAGGTCTCGCCCTTGGGGGGCGCGATGCTTCAGAGCAACCAGGTTCT
TTTCCGGCGGGTTTACGACACATATGTGGAATGCGGAGGGCGCTGGAACC
GACAGCAGGTGCGGTAACTATATTAGTCGAAACTATGGCCCATTTATGTC
AAGGTTGTCTTTTTTTGTTTTTGGCTGAGATGCCATGATGCGCAGGCCTC
AATTCTCCAGATTCTCACTGAACCTCGTCTCGAATCCTTGTATATGAACT
ATAATGCTCGTTAGGCTTGGAGGATGTTGAAAGTAGGTGTGATCGTGTTC
CCGCAGGTTTCTGCGTTATCGGGAATTTTGAACACCGACGATTGACGTAT
TTGGCTGCAGTTCCCCCTCTTGGGCGTCGGCATCGGTGTCATGTGTTCAC
GCACAACAGGTCGCATAGCCCAAGTTTCTGCGCCCTACATTTTGCATCCC
TCGCGTCTTCTCAATCCTTGGACCTCGCTCTCGCCTATGGTACATGTTGT
ATCTCTTTAGATTGCAGTGCTTTCATCACGTGATGATTGATGCCATACCT
TGCGCAGGTTTTGGACCAGCTGCGCGAGGAG
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Coding sequence (CDS) from alignment at H-elongata_contig1799:6355..7985+

>mRNA_H-elongata_contig1799.4781.1 ID=mRNA_H-elongata_contig1799.4781.1|Name=mRNA_H-elongata_contig1799.4781.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1134bp|location=Sequence derived from alignment at H-elongata_contig1799:6355..7985+ (Himanthalia elongata Himel1 dioecious)
ATGTTACCTCGGAGATTTGTAGTAAGGTCGATACCTCCGACACAAACGAT
CATGTTGATTGCCCGACGCTGTTACAGGCATGTTACCTCGGAGATTTGTA
GTAAGGTCGATACCTCCGACACAAACGATCATGTTGATTGCCCGACGCTG
TTACAGGCGCAAGTGTCTCTTCGCGTTGGCCATCAAATCATGCAATACAC
GAATGGTGAAGTGGGTTGCCGGACTCATCAACCGCAACTACCCGGACAGC
AAAGAGGCAAGTGTCTCTTCGCGTTGGCCATCAAATCATGCAATACACGA
ATGGTGAAGTGGGTTGCCGGACTCATCAACCGCAACTACCCGGACAGCAA
AGAGGCTTGGGATCGACTCCGTGGCCACAAGGCCGAGAAAAGCTCGTTGG
CATACGCGGCGTCGACACCACCTACTGCCAAGAATAACGGAGAGCATATG
TTTGACACAGTTCTCTGGTGTCTAAAGAAGGCTTGGGATCGACTCCGTGG
CCACAAGGCCGAGAAAAGCTCGTTGGCATACGCGGCGTCGACACCACCTA
CTGCCAAGAATAACGGAGAGCATATGTTTGACACAGTTCTCTGGTGTCTA
AAGAAGGCGGCCGGAAATATGTATGACGACCAAAGGCTTGAAGGGACTAA
CCCCAGGCCAACAAAGAAGGAATACGTAAATGCGCTTCTGCGAAGAGAAT
TAGCTGTGACCAGGGAGCCGAGGGTCCGAGGTAAGCTATCACAGGTCTCG
CCCTTGGGGGGCGCGATGCTTCAGAGCAACCAGGTTCTTTTCCGGCGGGT
TTACGACACATATGTGGAATGCGGAGGGCGCTGGAACCGACAGCAGGCGG
CCGGAAATATGTATGACGACCAAAGGCTTGAAGGGACTAACCCCAGGCCA
ACAAAGAAGGAATACGTAAATGCGCTTCTGCGAAGAGAATTAGCTGTGAC
CAGGGAGCCGAGGGTCCGAGGTAAGCTATCACAGGTCTCGCCCTTGGGGG
GCGCGATGCTTCAGAGCAACCAGGTTCTTTTCCGGCGGGTTTACGACACA
TATGTGGAATGCGGAGGGCGCTGGAACCGACAGCAGGTTTTGGACCAGCT
GCGCGAGGAGGTTTTGGACCAGCTGCGCGAGGAG
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