mRNA_H-elongata_contig1798.4776.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1798.4776.1
Unique NamemRNA_H-elongata_contig1798.4776.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig1798.4776.1 vs. uniprot
Match: A0A6H5K024_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K024_9PHAE)

HSP 1 Score: 353 bits (906), Expect = 1.380e-110
Identity = 168/258 (65.12%), Postives = 199/258 (77.13%), Query Frame = 3 
Query: 1257 PGF*SKPRF*RETNILVLDNASYHDGFDAEVKVPKTNTKKHNVQLLRIFGALAIKARRGAANGAVVEHSFEIPKDHGTSFPNVREEGGVSREDVAGATREYLRLKYPKKLEERVANIMREAGWELIWTPPYSPSFQPIELFWQYGKPYVSLTFKLKRKMRKVWKQIRKGWYEDPEWSGQEGGWKAADCSKLVAHAIGEMYTWIKIRDGVVSGAIGTLKIPKEYNKDDVSPVGDIEDGIGELIENEREEWEGGAIDSIE 2030
            P + + P F  +  ILVLDNASYH GFDAEVKVP+TNTKKHNV LLR+FGA +I+ RR      VVE++ E+P + G+SFP    EGGVSR +VA ATREY+ L +P++LEERV   MR+ GW LIWTPPY PSFQPIELFWQ+GK YVSL F+LKRKMR+VW QIRKGWY D EW GQEGGWKAADCSKLV HAIGEM  W+K RDGV+SG IG+L+ P  Y+ DDVSPVGD+E+G+GE I+ E  EW G   D +E
Sbjct:  282 PAYNAIPEFKGKRMILVLDNASYHHGFDAEVKVPETNTKKHNVDLLRMFGAKSIRVRRKEGEQGVVEYNLEVPTEPGSSFPAGNREGGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYGDKEWPGQEGGWKAADCSKLVDHAIGEMNKWVKDRDGVLSGTIGSLEKPDGYDTDDVSPVGDVEEGVGEQIQQESAEW-GDGSDEVE 538
[Close]
BLAST of mRNA_H-elongata_contig1798.4776.1 vs. uniprot
Match: A0A6H5KF39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF39_9PHAE)

HSP 1 Score: 345 bits (885), Expect = 3.790e-110
Identity = 163/248 (65.73%), Postives = 194/248 (78.23%), Query Frame = 3 
Query: 1287 RETNILVLDNASYHDGFDAEVKVPKTNTKKHNVQLLRIFGALAIKARRGAANGAVVEHSFEIPKDHGTSFPNVREEGGVSREDVAGATREYLRLKYPKKLEERVANIMREAGWELIWTPPYSPSFQPIELFWQYGKPYVSLTFKLKRKMRKVWKQIRKGWYEDPEWSGQEGGWKAADCSKLVAHAIGEMYTWIKIRDGVVSGAIGTLKIPKEYNKDDVSPVGDIEDGIGELIENEREEWEGGAIDSIE 2030
            R+  I VLDNASYH GFDAEVKVP+TNTKKHNV LLR+FGA +++ RR      VVE++FE+P + G+SFP    EGGVSR +VA ATREY+ L +P++LEERV   MR+ GW LIWTPPY PSFQPIELFWQ+GK YVSL F+LKRKMR+VW QIRKGWY D EW GQEGGWKAADCSKLV HAI EM  W+K R+GV+SG IG+L+ P  Y+ DDVSPVGD+E+G+GE I+ E  EW G   D +E
Sbjct:   96 RKRIIFVLDNASYHHGFDAEVKVPETNTKKHNVDLLRMFGAKSMRVRRKEGEQGVVEYNFEVPTEPGSSFPAGNREGGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYGDKEWPGQEGGWKAADCSKLVHHAIREMKKWVKDRNGVLSGTIGSLEKPDGYDTDDVSPVGDVEEGVGEQIQQESAEW-GDGSDEVE 342
[Close]
BLAST of mRNA_H-elongata_contig1798.4776.1 vs. uniprot
Match: A0A6H5KIM5_9PHAE (DDE_3 domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIM5_9PHAE)

HSP 1 Score: 353 bits (907), Expect = 1.750e-109
Identity = 168/258 (65.12%), Postives = 199/258 (77.13%), Query Frame = 3 
Query: 1257 PGF*SKPRF*RETNILVLDNASYHDGFDAEVKVPKTNTKKHNVQLLRIFGALAIKARRGAANGAVVEHSFEIPKDHGTSFPNVREEGGVSREDVAGATREYLRLKYPKKLEERVANIMREAGWELIWTPPYSPSFQPIELFWQYGKPYVSLTFKLKRKMRKVWKQIRKGWYEDPEWSGQEGGWKAADCSKLVAHAIGEMYTWIKIRDGVVSGAIGTLKIPKEYNKDDVSPVGDIEDGIGELIENEREEWEGGAIDSIE 2030
            P + + P F  +  ILVLDNASYH GFDAEVKVP+TNTKKHNV LLR+FGA +I+ RR      VVE++FE+P + G+SFP    EGGVSR +VA ATREY+ L +P++LEERV   MR+ GW LIWTPPY PSFQPIELFWQ+GK YVSL F+LKRKMR+VW QIRKGWY D EW GQEGGWKAADCSKLV HAIGEM  W+K RDGV+SG IG+L+ P  Y+ DDV PVGD+E+G+GE I+ E  EW G   D +E
Sbjct:  383 PAYNAIPEFKGKRMILVLDNASYHHGFDAEVKVPETNTKKHNVDLLRMFGAKSIRVRRKEGEQGVVEYNFEVPTEPGSSFPAGNREGGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYGDKEWPGQEGGWKAADCSKLVDHAIGEMNKWVKDRDGVLSGTIGSLEKPDGYDTDDVPPVGDVEEGVGEQIQQESAEW-GDGSDEVE 639
[Close]
BLAST of mRNA_H-elongata_contig1798.4776.1 vs. uniprot
Match: A0A6H5KHE7_9PHAE (DDE_3 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE7_9PHAE)

HSP 1 Score: 342 bits (878), Expect = 9.650e-109
Identity = 163/259 (62.93%), Postives = 199/259 (76.83%), Query Frame = 3 
Query: 1254 HPGF*SKPRF*RETNILVLDNASYHDGFDAEVKVPKTNTKKHNVQLLRIFGALAIKARRGAANGAVVEHSFEIPKDHGTSFPNVREEGGVSREDVAGATREYLRLKYPKKLEERVANIMREAGWELIWTPPYSPSFQPIELFWQYGKPYVSLTFKLKRKMRKVWKQIRKGWYEDPEWSGQEGGWKAADCSKLVAHAIGEMYTWIKIRDGVVSGAIGTLKIPKEYNKDDVSPVGDIEDGIGELIENEREEWEGGAIDSIE 2030
            +P + + P F  +  ILVLDNASYH GFDA+VK+P++NTKKHNV LLR+FGA +I+ +R      V  ++FE+P + G+SFP    EGGVSR +VA ATREY+ L +P++LEERV   MR+ GW LIWTPPY PSFQPIELFWQ+GK YVSL F+LKRKMR+VW QIRKGWY D EW GQEGGWKAADCSKLV HAIGEM  W+K RDGV+SG IG+L+ P  Y+ DDVSPVGD+E+G+GE I+ E  EW G   D +E
Sbjct:  112 NPAYNAIPEFKGKRMILVLDNASYHHGFDAQVKLPESNTKKHNVDLLRMFGAKSIRVKRKEGEQGV--YNFEVPTEPGSSFPAGNREGGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYGDKEWPGQEGGWKAADCSKLVDHAIGEMNKWVKDRDGVLSGTIGSLEKPDGYDTDDVSPVGDVEEGVGEQIQQESAEW-GDGSDEVE 367
[Close]
BLAST of mRNA_H-elongata_contig1798.4776.1 vs. uniprot
Match: A0A6H5JR41_9PHAE (DDE_3 domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR41_9PHAE)

HSP 1 Score: 351 bits (900), Expect = 2.480e-108
Identity = 167/258 (64.73%), Postives = 199/258 (77.13%), Query Frame = 3 
Query: 1257 PGF*SKPRF*RETNILVLDNASYHDGFDAEVKVPKTNTKKHNVQLLRIFGALAIKARRGAANGAVVEHSFEIPKDHGTSFPNVREEGGVSREDVAGATREYLRLKYPKKLEERVANIMREAGWELIWTPPYSPSFQPIELFWQYGKPYVSLTFKLKRKMRKVWKQIRKGWYEDPEWSGQEGGWKAADCSKLVAHAIGEMYTWIKIRDGVVSGAIGTLKIPKEYNKDDVSPVGDIEDGIGELIENEREEWEGGAIDSIE 2030
            P + + P F  +  ILVLDNASYH GF +EVKVP+TNTKKHNV LLR+FGA +I+ RR      VVE++FE+P + G+SFP    EGGVSR +VA ATREY+ L +P++LEERV   MR+ GW LIWTPPY PSFQPIELFWQ+GK YVSL F+LKRKMR+VW QIRKGWY D EW GQEGGWKAADCSKLV HAIGEM  W+K RDGV+SG IG+L+ P  Y+ DDVSPVGD+E+G+GE I+ E  EW G   D +E
Sbjct:  393 PAYNAIPEFKGKRMILVLDNASYHHGFVSEVKVPETNTKKHNVDLLRMFGAKSIRVRRKEGEQGVVEYNFEVPTEPGSSFPAGNREGGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYGDKEWPGQEGGWKAADCSKLVDHAIGEMNKWVKDRDGVLSGTIGSLEKPDGYDTDDVSPVGDVEEGVGEQIQQESAEW-GDGSDEVE 649
[Close]
BLAST of mRNA_H-elongata_contig1798.4776.1 vs. uniprot
Match: D8LNM6_ECTSI (DDE_3 domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LNM6_ECTSI)

HSP 1 Score: 350 bits (899), Expect = 6.620e-108
Identity = 166/258 (64.34%), Postives = 198/258 (76.74%), Query Frame = 3 
Query: 1257 PGF*SKPRF*RETNILVLDNASYHDGFDAEVKVPKTNTKKHNVQLLRIFGALAIKARRGAANGAVVEHSFEIPKDHGTSFPNVREEGGVSREDVAGATREYLRLKYPKKLEERVANIMREAGWELIWTPPYSPSFQPIELFWQYGKPYVSLTFKLKRKMRKVWKQIRKGWYEDPEWSGQEGGWKAADCSKLVAHAIGEMYTWIKIRDGVVSGAIGTLKIPKEYNKDDVSPVGDIEDGIGELIENEREEWEGGAIDSIE 2030
            P + + P F  +  ILVLDNASYH GFDAEVKVP+TNTKKHNV LLR FGA +I+ +R       VEH+FE+P + G+SFP    EGGVSR +VA ATREY+RL YP++LEERV   M++ GW LIWTPPY PSFQPIELFWQ+GK YVSL F+LKRKMR+VW QIR+GWY D EWSGQEGGWKAA+CSKLV HAIGEM  W++ RD  +SG IG L+ P  Y+KDDVSPVGD+E+G+GE I+ E  EW G   D +E
Sbjct:  417 PAYNAIPEFEGKKMILVLDNASYHHGFDAEVKVPETNTKKHNVDLLRKFGAKSIRVKRKEGEQGFVEHNFEVPSEPGSSFPAGNREGGVSRAEVATATREYIRLNYPERLEERVVTFMKKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRQGWYGDKEWSGQEGGWKAANCSKLVEHAIGEMNKWVRDRDAGLSGKIGNLQKPDGYDKDDVSPVGDVEEGVGEQIQQESAEW-GDGSDEVE 673
[Close]
BLAST of mRNA_H-elongata_contig1798.4776.1 vs. uniprot
Match: A0A6H5JZ34_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ34_9PHAE)

HSP 1 Score: 306 bits (785), Expect = 2.600e-96
Identity = 154/259 (59.46%), Postives = 191/259 (73.75%), Query Frame = 3 
Query: 1254 HPGF*SKPRF*RETNILVLDNASYHDGFDAEVKVPKTNTKKHNVQLLRIFGALAIKARRGAANGAVVEHSFEIPKDHGTSFPNVREEGGVSREDVAGATREYLRLKYPKKLEERVANIMREAGWELIWTPPYSPSFQPIELFWQYGKPYVSLTFKLKRKMRKVWKQIRKGWYEDPEWSGQEGGWKAADCSKLVAHAIGEMYTWIKIRDGVVSGAIGTLKIPKEYNKDDVSPVGDIEDGIGELIENEREEWEGGAIDSIE 2030
            +PG+ + P F  +  IL+LDNASYH GFDAEVKVP++NTKKHNV LLR+FGA +I+ +R      VVE++FE+P + G+SFP    EGGVSR  VA ATREY+ L +P++LE+RV  ++ E  +E   TPPY PSFQPIELFWQ+GK YVSL F+LKRKMR+VW  IRKGWY D EW GQEGGWKAA+CSKLV HA+ EM  W+K RDGV+SG IG+L  P  Y+ DDV PV D+E+G GE I+ E  E  G   D +E
Sbjct:   15 NPGYNTIPEFKGKRIILILDNASYHHGFDAEVKVPESNTKKHNVDLLRMFGAQSIRVKRKEGEQGVVEYNFEVPTEPGSSFPAGNREGGVSRAGVATATREYIHLNHPERLEQRVGGVV-EYNFE---TPPYMPSFQPIELFWQHGKQYVSLKFELKRKMREVWVPIRKGWYGDKEWPGQEGGWKAANCSKLVDHALREMNKWVKDRDGVLSGTIGSLIKPDGYDTDDVLPVDDVEEGGGEEIQQESAE-RGDGSDEVE 268
[Close]
BLAST of mRNA_H-elongata_contig1798.4776.1 vs. uniprot
Match: A0A6H5JZ92_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ92_9PHAE)

HSP 1 Score: 307 bits (786), Expect = 1.240e-95
Identity = 165/323 (51.08%), Postives = 195/323 (60.37%), Query Frame = 3 
Query: 1254 HPGF*SKPRF*RETNILVLDNASYHDGFDAEVKVPKTNTKKHNVQLLRIFGALAIKARRGAANGAVVEHSFEIPKDHGTSFPNVREEGGVSREDVAGATREYLRLKYPKKLEERVANIMREAGWELIWTPPYSPSFQPIELFWQYGKP----------------------------------------------------------------YVSLTFKLKRKMRKVWKQIRKGWYEDPEWSGQEGGWKAADCSKLVAHAIGEMYTWIKIRDGVVSGAIGTLKIPKEYNKDDVSPVGDIEDGIGELIENEREEWEGGAIDSIE 2030
            +P + + P F  +  ILVLDNASYH  FDAEVKVP+TNTKKHNV LLR      +K + G     VVE++FE+P + G+SFP    EGGVSR +VA ATREY+ L +P++LEERV   MR+ GW LIWTPPY PSFQPIELFWQ+GK                                                                 YVSL F+LKRKMR+VW QIRKGWY D EW GQEGGWKAADCSKLV HAIGEM  W+K RDGV+SG IG+L+ P  Y+ DDVSPVGD+E+G+GE I+ E  EW G   D IE
Sbjct:   11 NPAYNAIPEFKGKRMILVLDNASYHHRFDAEVKVPETNTKKHNVDLLR-----RVKHKEGGQ--CVVEYNFEVPTEPGSSFPAGNREGGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQXREGGVSRAEVATATREHIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYGDKEWPGQEGGWKAADCSKLVDHAIGEMNKWVKDRDGVLSGTIGSLEKPDGYDTDDVSPVGDVEEGVGEQIQQESAEW-GDGSDEIE 325
[Close]
BLAST of mRNA_H-elongata_contig1798.4776.1 vs. uniprot
Match: A0A6H5KDX7_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDX7_9PHAE)

HSP 1 Score: 293 bits (750), Expect = 3.100e-88
Identity = 138/209 (66.03%), Postives = 162/209 (77.51%), Query Frame = 3 
Query: 1257 PGF*SKPRF*RETNILVLDNASYHDGFDAEVKVPKTNTKKHNVQLLRIFGALAIKARRGAANGAVVEHSFEIPKDHGTSFPNVREEGGVSREDVAGATREYLRLKYPKKLEERVANIMREAGWELIWTPPYSPSFQPIELFWQYGKPYVSLTFKLKRKMRKVWKQIRKGWYEDPEWSGQEGGWKAADCSKLVAHAIGEMYTWIKIRDGV 1883
            P + + P F  +  ILVLDNASYH GFDAEVKVP++NTKKHNV LLR+FGA +I+ RR      VVE++ E+P + G+SFP    EGGVSR +VA ATREY+ L +P++LEERV   MR+ GW LIWTPPY PSFQPIELFWQ+GK YVSL F+LKRKMR+VW QIRKGWY D  W GQEGGWKAA+CSKLV HAIGEM  W+K RD V
Sbjct:  266 PAYNAIPEFKGKRMILVLDNASYHHGFDAEVKVPESNTKKHNVDLLRMFGAKSIRVRRKEGEQGVVEYNLEVPTEPGSSFPAGNREGGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLKFELKRKMREVWVQIRKGWYGDKAWPGQEGGWKAANCSKLVDHAIGEMNKWVKDRDEV 474
[Close]
BLAST of mRNA_H-elongata_contig1798.4776.1 vs. uniprot
Match: A0A6H5LE74_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LE74_9PHAE)

HSP 1 Score: 263 bits (671), Expect = 1.180e-76
Identity = 130/245 (53.06%), Postives = 165/245 (67.35%), Query Frame = 3 
Query: 1278 RF*RETNILVLDNASYHDGFDAEVKVPKTNTKKHNVQLLRIFGALAIKARRGAANGAVVEHSFEIPKDHGTSFPNVREEGGVSREDVAGATREYLRLKYPKKLEERVANIMREAGWELIWTPPYSPSFQPIELFWQYGKPYVSLTFKLKRKMRKVWKQIRKGWYEDPEWSGQEGGWKAADCSKLVAHAIGEMYTWIKIRDGVVSGAIGTLKIP-KEYNKDDVSPVGDIEDGIGELIENEREEWEG 2009
            +F  +   LVLDNASYH  FD EVKVP+TN+KK+NV+LLR +G  + K  R  + G   E++FE+P     S PN   + GVS+E++A  TR Y +  +P+KLEE+    MRE GW LIWTPPY P+FQPIELFWQ+GK YVS+ F+  R M  VWKQIR GWY DPEW GQEGGWKAADC KLV H IG+M  WI +  G +SG IG+L+ P  EY +   +   +IEDG+    E + +EW G
Sbjct:  237 QFKNKKMFLVLDNASYHHCFDEEVKVPETNSKKYNVELLRKYGCTSFKVTR-ESEGKAAEYNFEVPAQG--SLPNANRKNGVSKEEIASVTRTYFKKNFPQKLEEKAETYMREKGWGLIWTPPYMPTFQPIELFWQHGKHYVSIHFEKGRNMLDVWKQIRLGWYGDPEWDGQEGGWKAADCGKLVQHTIGKMDEWIGLYGGNLSGTIGSLEYPVAEYQE--ATAEDEIEDGV----EEQTDEWLG 472
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1798.4776.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K024_9PHAE1.380e-11065.12DDE_3 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KF39_9PHAE3.790e-11065.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KIM5_9PHAE1.750e-10965.12DDE_3 domain-containing protein n=4 Tax=Ectocarpus... [more]
A0A6H5KHE7_9PHAE9.650e-10962.93DDE_3 domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A6H5JR41_9PHAE2.480e-10864.73DDE_3 domain-containing protein n=5 Tax=Ectocarpus... [more]
D8LNM6_ECTSI6.620e-10864.34DDE_3 domain-containing protein n=3 Tax=Ectocarpus... [more]
A0A6H5JZ34_9PHAE2.600e-9659.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZ92_9PHAE1.240e-9551.08DDE_3 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KDX7_9PHAE3.100e-8866.03DDE_3 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5LE74_9PHAE1.180e-7653.06Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1798contigH-elongata_contig1798:3868..6297 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size2030
Cds size693
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1798.4776.1prot_H-elongata_contig1798.4776.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1798 5199..6291 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930037.3063207-UTR-H-elongata_contig1798:3867..51981622930037.3063207-UTR-H-elongata_contig1798:3867..5198Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1798 3868..5198 -
1691679256.5227914-UTR-H-elongata_contig1798:3867..51981691679256.5227914-UTR-H-elongata_contig1798:3867..5198Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1798 3868..5198 -
1622930037.3482165-UTR-H-elongata_contig1798:6291..62971622930037.3482165-UTR-H-elongata_contig1798:6291..6297Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1798 6292..6297 -
1691679256.5494187-UTR-H-elongata_contig1798:6291..62971691679256.5494187-UTR-H-elongata_contig1798:6291..6297Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1798 6292..6297 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930037.3240693-CDS-H-elongata_contig1798:5198..54261622930037.3240693-CDS-H-elongata_contig1798:5198..5426Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1798 5199..5426 -
1691679256.5308025-CDS-H-elongata_contig1798:5198..54261691679256.5308025-CDS-H-elongata_contig1798:5198..5426Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1798 5199..5426 -
1622930037.3367267-CDS-H-elongata_contig1798:5826..62911622930037.3367267-CDS-H-elongata_contig1798:5826..6291Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1798 5827..6291 -
1691679256.540283-CDS-H-elongata_contig1798:5826..62911691679256.540283-CDS-H-elongata_contig1798:5826..6291Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1798 5827..6291 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1798.4776.1

>prot_H-elongata_contig1798.4776.1 ID=prot_H-elongata_contig1798.4776.1|Name=mRNA_H-elongata_contig1798.4776.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=231bp
MAMGKNRPNNVGRGRQWGEIKKVQTERARDAVALDRLRVQLNAQKAALSA
ALLEIKKREKAIKVNERDIAKEAEISRAAAKRVADGQREQELIEAVARTF
NSRLLEFSLDFIDNSLEDLKPRTGQTVCKTQYRMILMLLLALCKEGSSEK
KAVNQVSKTFKVGHEKVREVSNHWWDHRELYETTGSGRGKVIKKRDKRPR
LSKKQEDKLHEFINGEHKAGRQVFRRKVAD*
back to top

mRNA from alignment at H-elongata_contig1798:3868..6297-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1798.4776.1 ID=mRNA_H-elongata_contig1798.4776.1|Name=mRNA_H-elongata_contig1798.4776.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2430bp|location=Sequence derived from alignment at H-elongata_contig1798:3868..6297- (Himanthalia elongata Himel1 dioecious)
CTGACGATGGCGATGGGAAAAAACCGACCGAACAATGTCGGTAGAGGCCG
CCAGTGGGGTGAGATCAAGAAAGTCCAAACTGAAAGAGCGAGAGATGCCG
TAGCTCTAGACAGACTTCGGGTTCAGCTGAACGCCCAGAAGGCGGCGCTA
TCAGCTGCCTTGCTGGAGATTAAGAAAAGGGAAAAGGCTATTAAGGTAAA
TGAGCGTGATATTGCAAAGGAGGCAGAGATTTCCCGCGCAGCCGCAAAGC
GGGTAGCGGATGGACAGCGAGAACAGGAGTTGATCGAAGCGGTCGCCCGA
ACCTTCAACTCAAGACTTTTGGAGTTCAGCCTTGACTTCATCGACAATTC
TCTAGAGGATCTTAAGCCTAGGACTGGACAAACCGTGTGCAAGACCCAGT
ACAGAATGATCCTAATGCTCCTGCTCGCTCTTTGCAAGGAAGGAAGCTCT
GAAAAGAAGGCGGTGAACCAGGTCAGTAGAGCTGCAGGGTTTCAGGTTTG
TATATGTAGCTGTGCAAAAAAAGGGGAACCTATATTATTGTATAACACTC
ATTCTTTAGAGTACTTTTAGCGGTATCATTTACAGGACTATATTGCTCCT
TGTGTAAATTTTTCAAACTCGTTTAACTGCTGCTCGGTATTGAGACTTTC
AGCTACATAATATCGTTTATTACATGCACTTTTCCCGCCTCATCTGAGCG
TTATTGTGCAGTATATGTCCTTCACAACACTGCTGTCTGTACGGCTTACC
CACTATTTTTTACCGCTTGAAGATACCGGTCAGGTACTCCACTGCGGCTG
ACTTTCGAAAATATTACTGCGTGTTACGCTGATCTCGCATTCATATGATC
ATGCATCGCGCTGTCTTGTAGGTGTCGAAAACCTTCAAGGTTGGTCACGA
GAAAGTTAGGGAGGTTAGTAACCACTGGTGGGATCATAGAGAATTGTACG
AGACCACCGGCAGCGGAAGAGGGAAGGTCATCAAAAAGAGAGACAAGAGA
CCCCGCCTTAGTAAAAAACAAGAGGACAAACTTCACGAGTTCATCAACGG
CGAACACAAGGCCGGGCGCCAAGTTTTTCGCCGGAAGGTCGCGGATTGAA
TGTGTACGGCTTGCAGCACGAAGACTCTACTGTCAAACCGCGCGGTAGAG
GGGTTGCTAGAAAGGCTCGGATATAGGCGCCGTAGAGGAAGAATCAAAAC
ACCGCCGTTAGATGCCAAGGCTTGCGCGCATTCGTATGTTTCTCGTTGAA
ATGGACATAGCAAAACGTGCAGAAGATGCGGGGTTGGCTGTCATTGTGTA
TATGGATGAGAGTTTCGTTCACCAGACACACGGATCCCCGTACTCATACT
TTCCCACAGACGATAATGGAGTTGTGCAGGATGGGATCGGTCGCACAACG
GGAAATGGATTACGTATAATCATGGTGCATGCAATTACCAAGTGGGGGCC
GTTGGTTAAGCCTTTTGAGAAGTTTCCCCTCGAAGAGGGATGGTTCAAAA
GTACGGAGAACGGCAGGGAAACGCAAGGGGAAAGGGATTCAAGATGAAAT
ATAAAGAAACAGCTGAGTTTCTTAGGCAGGCGAAGTTGGCGAAAGGCGAT
TATCACGCGGCCATGACCGATTCTATGTTCATGGAGTGGCTCAAGCACCG
CCTCACCCCGGCTTTTAAAGCAAACCCCGCTTTTAGCGGGAGACAAATAT
CCTTGTGCTGGACAACGCGTCGTACCATGATGGCTTCGACGCTGAGGTTA
AGGTACCCAAGACCAACACCAAGAAGCACAATGTCCAATTGTTGCGTATC
TTTGGCGCGCTGGCGATCAAGGCTAGGCGTGGGGCTGCCAATGGTGCAGT
GGTAGAGCACAGCTTCGAAATACCGAAAGATCATGGTACCTCCTTCCCGA
ATGTGAGAGAGGAGGGTGGCGTAAGCAGAGAAGATGTAGCAGGGGCTACT
CGGGAGTACCTTCGCCTTAAATACCCTAAAAAGCTCGAAGAACGGGTAGC
GAATATCATGCGGGAGGCGGGGTGGGAGTTGATTTGGACGCCGCCTTACA
GTCCTTCTTTCCAACCGATCGAGCTTTTTTGGCAGTATGGGAAGCCGTAT
GTAAGTCTCACTTTTAAGTTGAAGCGAAAGATGCGAAAGGTATGGAAGCA
AATCCGTAAAGGGTGGTACGAAGATCCAGAATGGTCAGGCCAGGAGGGGG
GCTGGAAGGCAGCTGATTGTTCAAAATTGGTTGCCCATGCCATTGGAGAG
ATGTACACGTGGATTAAAATTCGTGATGGAGTCGTAAGTGGTGCGATAGG
CACGCTTAAAATTCCAAAAGAGTATAACAAGGACGACGTATCGCCTGTGG
GTGATATCGAGGATGGGATTGGGGAGCTGATTGAAAACGAAAGAGAAGAG
TGGGAGGGGGGCGCCATCGATTCTATCGAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig1798:3868..6297-

>mRNA_H-elongata_contig1798.4776.1 ID=mRNA_H-elongata_contig1798.4776.1|Name=mRNA_H-elongata_contig1798.4776.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1386bp|location=Sequence derived from alignment at H-elongata_contig1798:3868..6297- (Himanthalia elongata Himel1 dioecious)
ATGGCGATGGGAAAAAACCGACCGAACAATGTCGGTAGAGGCCGCCAGTG
GGGTGAGATCAAGAAAGTCCAAACTGAAAGAGCGAGAGATGCCGTAGCTC
TAGACAGACTTCGGGTTCAGCTGAACGCCCAGAAGGCGGCGCTATCAGCT
GCCTTGCTGGAGATTAAGAAAAGGGAAAAGGCTATTAAGGTAAATGAGCG
TGATATTGCAAAGGAGGCAGAGATTTCCCGCGCAGCCGCAAAGCGGGTAG
CGGATGGACAGCGAGAACAGGAGTTGATCGAAGCGGTCGCCCGAACCTTC
AACTCAAGACTTTTGGAGTTCAGCCTTGACTTCATCGACAATTCTCTAGA
GGATCTTAAGCCTAGGACTGGACAAACCGTGTGCAAGACCCAGTACAGAA
TGATCCTAATGCTCCTGCTCGCTCTTTGCAAGGAAGGAAGCTCTGAAAAG
AAGGCGGTGAACCAGATGGCGATGGGAAAAAACCGACCGAACAATGTCGG
TAGAGGCCGCCAGTGGGGTGAGATCAAGAAAGTCCAAACTGAAAGAGCGA
GAGATGCCGTAGCTCTAGACAGACTTCGGGTTCAGCTGAACGCCCAGAAG
GCGGCGCTATCAGCTGCCTTGCTGGAGATTAAGAAAAGGGAAAAGGCTAT
TAAGGTAAATGAGCGTGATATTGCAAAGGAGGCAGAGATTTCCCGCGCAG
CCGCAAAGCGGGTAGCGGATGGACAGCGAGAACAGGAGTTGATCGAAGCG
GTCGCCCGAACCTTCAACTCAAGACTTTTGGAGTTCAGCCTTGACTTCAT
CGACAATTCTCTAGAGGATCTTAAGCCTAGGACTGGACAAACCGTGTGCA
AGACCCAGTACAGAATGATCCTAATGCTCCTGCTCGCTCTTTGCAAGGAA
GGAAGCTCTGAAAAGAAGGCGGTGAACCAGGTGTCGAAAACCTTCAAGGT
TGGTCACGAGAAAGTTAGGGAGGTTAGTAACCACTGGTGGGATCATAGAG
AATTGTACGAGACCACCGGCAGCGGAAGAGGGAAGGTCATCAAAAAGAGA
GACAAGAGACCCCGCCTTAGTAAAAAACAAGAGGACAAACTTCACGAGTT
CATCAACGGCGAACACAAGGCCGGGCGCCAAGTTTTTCGCCGGAAGGTCG
CGGATTGAGTGTCGAAAACCTTCAAGGTTGGTCACGAGAAAGTTAGGGAG
GTTAGTAACCACTGGTGGGATCATAGAGAATTGTACGAGACCACCGGCAG
CGGAAGAGGGAAGGTCATCAAAAAGAGAGACAAGAGACCCCGCCTTAGTA
AAAAACAAGAGGACAAACTTCACGAGTTCATCAACGGCGAACACAAGGCC
GGGCGCCAAGTTTTTCGCCGGAAGGTCGCGGATTGA
back to top