mRNA_H-elongata_contig17976.4773.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig17976.4773.1 vs. uniprot
Match: A0A6H5K540_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K540_9PHAE) HSP 1 Score: 115 bits (288), Expect = 3.220e-29 Identity = 54/87 (62.07%), Postives = 66/87 (75.86%), Query Frame = 1
Query: 1 CTAQYRIIAWTLNSPGSQNDRTAFKFSGFHRIFDQLSESYYVLGDAANLASDRLLVPYPGLDLPDSQDAYNYYQSQYRTAIEHTFGI 261
C AQYRI+AW +N PGSQNDRTAF FSGF ++ L E ++V+GDAA AS+R++VP+PG L SQDA NYY SQ R AIE T+GI
Sbjct: 143 CDAQYRIMAWMMNCPGSQNDRTAFNFSGFDKLLAGLPEGHFVVGDAAYGASERVVVPFPGTSLSASQDACNYYMSQCRMAIEQTYGI 229
BLAST of mRNA_H-elongata_contig17976.4773.1 vs. uniprot
Match: A0A6H5L6B6_9PHAE (DDE Tnp4 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6B6_9PHAE) HSP 1 Score: 114 bits (286), Expect = 1.970e-28 Identity = 54/87 (62.07%), Postives = 66/87 (75.86%), Query Frame = 1
Query: 1 CTAQYRIIAWTLNSPGSQNDRTAFKFSGFHRIFDQLSESYYVLGDAANLASDRLLVPYPGLDLPDSQDAYNYYQSQYRTAIEHTFGI 261
C AQYRI+AW +N PGSQNDRTAF FSGF ++ L E ++V+GDAA AS+R++VP+PG L SQDA NYY SQ R AIE T+GI
Sbjct: 214 CDAQYRIMAWMMNCPGSQNDRTAFNFSGFDKLLAGLPEGHFVVGDAAYGASERVVVPFPGTSLSASQDACNYYVSQCRMAIEQTYGI 300
BLAST of mRNA_H-elongata_contig17976.4773.1 vs. uniprot
Match: A0A6H5KNF2_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNF2_9PHAE) HSP 1 Score: 111 bits (278), Expect = 2.330e-28 Identity = 52/87 (59.77%), Postives = 66/87 (75.86%), Query Frame = 1
Query: 1 CTAQYRIIAWTLNSPGSQNDRTAFKFSGFHRIFDQLSESYYVLGDAANLASDRLLVPYPGLDLPDSQDAYNYYQSQYRTAIEHTFGI 261
C AQYRI+AWT++ PGSQNDRTAF F+ F ++ L E ++V+GDAA AS+R++VP+PG L SQDA NYY SQ R AIE T+GI
Sbjct: 62 CDAQYRIVAWTMSCPGSQNDRTAFNFAWFDKLLAGLPEGHFVVGDAAYGASERVVVPFPGTSLSASQDACNYYVSQCRMAIEQTYGI 148
BLAST of mRNA_H-elongata_contig17976.4773.1 vs. uniprot
Match: A0A6H5KCG0_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG0_9PHAE) HSP 1 Score: 110 bits (276), Expect = 2.290e-27 Identity = 51/86 (59.30%), Postives = 62/86 (72.09%), Query Frame = 1
Query: 1 CTAQYRIIAWTLNSPGSQNDRTAFKFSGFHRIFDQLSESYYVLGDAANLASDRLLVPYPGLDLPDSQDAYNYYQSQYRTAIEHTFG 258
C A+Y+I AWT+N PGS NDRTAFK SGF R+ L + Y++GD A ASD++LVPYPG L SQD+YN+YQSQ R IE FG
Sbjct: 155 CNARYKITAWTMNCPGSCNDRTAFKHSGFERVLKTLPKGAYIVGDGAYPASDQVLVPYPGTTLTPSQDSYNFYQSQARIFIEQAFG 240
BLAST of mRNA_H-elongata_contig17976.4773.1 vs. uniprot
Match: A0A6H5K3F2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3F2_9PHAE) HSP 1 Score: 110 bits (275), Expect = 7.600e-27 Identity = 53/87 (60.92%), Postives = 62/87 (71.26%), Query Frame = 1
Query: 1 CTAQYRIIAWTLNSPGSQNDRTAFKFSGFHRIFDQLSESYYVLGDAANLASDRLLVPYPGLDLPDSQDAYNYYQSQYRTAIEHTFGI 261
C A+Y IIAWT+N PGS NDRTAFK S F + L Y++GDAA ASD++LVPYPG L SQDAYN+YQSQ R +IE FGI
Sbjct: 221 CNARYEIIAWTMNCPGSCNDRTAFKHSVFGTVLKTLPPGAYIVGDAAYPASDQVLVPYPGTSLTRSQDAYNFYQSQARISIEQAFGI 307
BLAST of mRNA_H-elongata_contig17976.4773.1 vs. uniprot
Match: A0A6H5K6M2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M2_9PHAE) HSP 1 Score: 108 bits (269), Expect = 5.910e-26 Identity = 51/87 (58.62%), Postives = 62/87 (71.26%), Query Frame = 1
Query: 1 CTAQYRIIAWTLNSPGSQNDRTAFKFSGFHRIFDQLSESYYVLGDAANLASDRLLVPYPGLDLPDSQDAYNYYQSQYRTAIEHTFGI 261
C A Y II WT+N PGSQNDRTAFK SGF + ++ +++GDAA AS+R+LVP PG L SQDAYN+YQSQ R +IE FGI
Sbjct: 225 CNASYEIITWTMNCPGSQNDRTAFKHSGFDALLSKMPPDCFIVGDAAYPASNRVLVPDPGTALTLSQDAYNFYQSQARISIEQAFGI 311
BLAST of mRNA_H-elongata_contig17976.4773.1 vs. uniprot
Match: A0A6H5JA67_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA67_9PHAE) HSP 1 Score: 65.5 bits (158), Expect = 4.330e-11 Identity = 30/52 (57.69%), Postives = 38/52 (73.08%), Query Frame = 1
Query: 106 LSESYYVLGDAANLASDRLLVPYPGLDLPDSQDAYNYYQSQYRTAIEHTFGI 261
L YYV+GD+A A+D++L PYPG DL QDA+N++QSQ R IE TFGI
Sbjct: 15 LHRDYYVVGDSAYGATDKMLAPYPGCDLNADQDAFNFFQSQGRICIEQTFGI 66
BLAST of mRNA_H-elongata_contig17976.4773.1 vs. uniprot
Match: A0A6H5JJA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJA1_9PHAE) HSP 1 Score: 58.9 bits (141), Expect = 3.320e-8 Identity = 27/51 (52.94%), Postives = 37/51 (72.55%), Query Frame = 1
Query: 49 SQNDRTAFKFSGFHRIFDQLSESYYVLGDAANLASDRLLVPYPGLDLPDSQ 201
SQNDRTAF FSGF ++ L E ++V+G+AA AS+R++VP+PG P Q
Sbjct: 225 SQNDRTAFNFSGFDKLLAGLPEGHFVVGNAAYGASERVVVPFPGTSPPXEQ 275
BLAST of mRNA_H-elongata_contig17976.4773.1 vs. uniprot
Match: A0A6H5JVS8_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS8_9PHAE) HSP 1 Score: 58.2 bits (139), Expect = 5.820e-8 Identity = 29/46 (63.04%), Postives = 35/46 (76.09%), Query Frame = 1
Query: 124 VLGDAANLASDRLLVPYPGLDLPDSQDAYNYYQSQYRTAIEHTFGI 261
V+GDAA AS+R++VP+PG L SQDA N Y SQYR AIE T+GI
Sbjct: 204 VVGDAAYGASERVVVPFPGTSLSASQDACNNYVSQYRMAIEQTYGI 249
BLAST of mRNA_H-elongata_contig17976.4773.1 vs. uniprot
Match: UPI001D0758E3 (protein ALP1-like n=2 Tax=Coccinella septempunctata TaxID=41139 RepID=UPI001D0758E3) HSP 1 Score: 54.7 bits (130), Expect = 1.050e-6 Identity = 37/103 (35.92%), Postives = 49/103 (47.57%), Query Frame = 1
Query: 1 CTAQYRIIAWTLNSPGSQNDRTAFKFSGFHRIFDQLS----------------ESYYVLGDAANLASDRLLVPYPGLDLPDSQDAYNYYQSQYRTAIEHTFGI 261
C A YR + S GSQ+D F+ S F + D S S++V GD A LL PYPG +L +S++ YNY S+ R IE+ FGI
Sbjct: 237 CDASYRFTLVDIGSFGSQSDWGVFRESAFGKALDSGSLKLPPEKSLPGSDVNFPSFFV-GDEAFPLKPYLLRPYPGRNLEESKNVYNYRLSRARRTIENAFGI 338 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17976.4773.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig17976.4773.1 >prot_H-elongata_contig17976.4773.1 ID=prot_H-elongata_contig17976.4773.1|Name=mRNA_H-elongata_contig17976.4773.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp CTAQYRIIAWTLNSPGSQNDRTAFKFSGFHRIFDQLSESYYVLGDAANLAback to top mRNA from alignment at H-elongata_contig17976:4404..4664+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig17976.4773.1 ID=mRNA_H-elongata_contig17976.4773.1|Name=mRNA_H-elongata_contig17976.4773.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=261bp|location=Sequence derived from alignment at H-elongata_contig17976:4404..4664+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig17976:4404..4664+ >mRNA_H-elongata_contig17976.4773.1 ID=mRNA_H-elongata_contig17976.4773.1|Name=mRNA_H-elongata_contig17976.4773.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=522bp|location=Sequence derived from alignment at H-elongata_contig17976:4404..4664+ (Himanthalia elongata Himel1 dioecious)back to top |