mRNA_H-elongata_contig179412.4757.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig179412.4757.1
Unique NamemRNA_H-elongata_contig179412.4757.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig179412.4757.1 vs. uniprot
Match: A0A6H5KTA2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTA2_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 8.320e-16
Identity = 37/49 (75.51%), Postives = 42/49 (85.71%), Query Frame = 1 
Query:   13 QLPLEQYFKSDYRELIRDERDNVLDAFTQLPRHLDQTGQLVDLIGNSYP 159
            ++PLEQYF SDYREL+RDER NV+DAFTQ P HL QTG LVD IGN+YP
Sbjct:  664 KVPLEQYFTSDYRELLRDERHNVVDAFTQQPPHLAQTGLLVDHIGNAYP 712
[Close]
BLAST of mRNA_H-elongata_contig179412.4757.1 vs. uniprot
Match: D8LEP1_ECTSI (WD-repeat protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEP1_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 5.810e-13
Identity = 34/45 (75.56%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:   13 QLPLEQYFKSDYRELIRDERDNVLDAFTQLPRHLDQTGQLVDLIG 147
            ++PLEQYF SDYREL+RDER NV+DAFTQ P HL QTG LVD IG
Sbjct:  957 KVPLEQYFTSDYRELLRDERHNVVDAFTQQPPHLAQTGLLVDHIG 1001
[Close]
BLAST of mRNA_H-elongata_contig179412.4757.1 vs. uniprot
Match: UPI001E276FB1 (bromodomain and WD repeat-containing protein 3 n=1 Tax=Harmonia axyridis TaxID=115357 RepID=UPI001E276FB1)

HSP 1 Score: 57.0 bits (136), Expect = 8.320e-8
Identity = 28/57 (49.12%), Postives = 36/57 (63.16%), Query Frame = 1 
Query:    7 IAQLPLEQYFKSDYRELIRDERDNVLDAFTQLPRHLDQTGQLVDLIGNSYPCQTEKV 177
            + QLP E +F +DYR LIRD   NVLD  TQ+P HL     LVD+ GN YP   +++
Sbjct:  556 LQQLPKELFFHTDYRPLIRDADQNVLDEQTQMPPHLMPPPFLVDIDGNPYPPALQRL 612
[Close]
BLAST of mRNA_H-elongata_contig179412.4757.1 vs. uniprot
Match: A0A023F021_TRIIF (Uncharacterized protein (Fragment) n=2 Tax=Triatominae TaxID=70999 RepID=A0A023F021_TRIIF)

HSP 1 Score: 56.6 bits (135), Expect = 1.140e-7
Identity = 26/57 (45.61%), Postives = 38/57 (66.67%), Query Frame = 1 
Query:    7 IAQLPLEQYFKSDYRELIRDERDNVLDAFTQLPRHLDQTGQLVDLIGNSYPCQTEKV 177
            + +LP E +F +DYR L+RD ++NVLD  TQ+P HL     LVD+ GN YP   +++
Sbjct:  542 MKELPKELFFHTDYRPLVRDAQNNVLDEQTQVPPHLMPPPFLVDIDGNPYPPDLQRL 598
[Close]
BLAST of mRNA_H-elongata_contig179412.4757.1 vs. uniprot
Match: D6X562_TRICA (Bromodomain and WD repeat-containing protein 3-like Protein n=2 Tax=Tribolium TaxID=7069 RepID=D6X562_TRICA)

HSP 1 Score: 55.8 bits (133), Expect = 2.120e-7
Identity = 27/58 (46.55%), Postives = 36/58 (62.07%), Query Frame = 1 
Query:    4 LIAQLPLEQYFKSDYRELIRDERDNVLDAFTQLPRHLDQTGQLVDLIGNSYPCQTEKV 177
            L  QLP E +F +DYR L+RD  + VLD  TQ+P HL     LVD+ GN YP   +++
Sbjct:  547 LFEQLPKELFFHTDYRPLVRDTNNYVLDEQTQIPPHLMPPPFLVDIDGNPYPPMLQRL 604
[Close]
BLAST of mRNA_H-elongata_contig179412.4757.1 vs. uniprot
Match: A0A7J7A0P3_9COLE (Uncharacterized protein n=1 Tax=Lamprigera yunnana TaxID=370605 RepID=A0A7J7A0P3_9COLE)

HSP 1 Score: 55.5 bits (132), Expect = 2.910e-7
Identity = 27/57 (47.37%), Postives = 35/57 (61.40%), Query Frame = 1 
Query:    4 LIAQLPLEQYFKSDYRELIRDERDNVLDAFTQLPRHLDQTGQLVDLIGNSYPCQTEK 174
            L+  LPLE +F +DYR L+RD    VLD  TQ+P HL     LVD+ GN YP   ++
Sbjct:  554 LLKTLPLELFFHTDYRPLVRDSNHVVLDEQTQIPPHLMPPPFLVDVDGNPYPPMVQR 610
[Close]
BLAST of mRNA_H-elongata_contig179412.4757.1 vs. uniprot
Match: A0A8K0GBJ4_9COLE (Uncharacterized protein n=1 Tax=Ignelater luminosus TaxID=2038154 RepID=A0A8K0GBJ4_9COLE)

HSP 1 Score: 55.1 bits (131), Expect = 3.980e-7
Identity = 30/70 (42.86%), Postives = 39/70 (55.71%), Query Frame = 1 
Query:    4 LIAQLPLEQYFKSDYRELIRDERDNVLDAFTQLPRHLDQTGQLVDLIGNSYP------------CQTEKV 177
            L+  LPLE +F +DYR L+RD  + VLD  TQ+  HL     LVD+ GN YP            CQTE++
Sbjct:  543 LLKTLPLELFFHTDYRPLVRDNNNTVLDEQTQIAPHLMPPPFLVDVDGNPYPPMLQRLVPGREHCQTEQL 612
[Close]
BLAST of mRNA_H-elongata_contig179412.4757.1 vs. uniprot
Match: A0A8I6R6G6_CIMLE (Uncharacterized protein n=1 Tax=Cimex lectularius TaxID=79782 RepID=A0A8I6R6G6_CIMLE)

HSP 1 Score: 55.1 bits (131), Expect = 3.980e-7
Identity = 26/54 (48.15%), Postives = 36/54 (66.67%), Query Frame = 1 
Query:   16 LPLEQYFKSDYRELIRDERDNVLDAFTQLPRHLDQTGQLVDLIGNSYPCQTEKV 177
            LP E +F +DYR L+RD  +NVLD  TQ+P HL     LVD+ GN YP + +++
Sbjct:  555 LPKELFFHTDYRPLVRDALNNVLDEQTQIPPHLMPPPFLVDIDGNPYPPRLQRL 608
[Close]
BLAST of mRNA_H-elongata_contig179412.4757.1 vs. uniprot
Match: N6TSS9_DENPD (Uncharacterized protein (Fragment) n=2 Tax=Dendroctonus ponderosae TaxID=77166 RepID=N6TSS9_DENPD)

HSP 1 Score: 54.3 bits (129), Expect = 7.420e-7
Identity = 26/55 (47.27%), Postives = 36/55 (65.45%), Query Frame = 1 
Query:   13 QLPLEQYFKSDYRELIRDERDNVLDAFTQLPRHLDQTGQLVDLIGNSYPCQTEKV 177
            QLP E +F +DYR L+RD+ + VLD  TQ+P HL     LVD+ GN YP   +++
Sbjct:  556 QLPRELFFHTDYRPLVRDQNNWVLDEQTQVPPHLMPPPFLVDIDGNPYPPMLQRL 610
[Close]
BLAST of mRNA_H-elongata_contig179412.4757.1 vs. uniprot
Match: UPI001D06A556 (bromodomain and WD repeat-containing protein 1 n=1 Tax=Coccinella septempunctata TaxID=41139 RepID=UPI001D06A556)

HSP 1 Score: 54.3 bits (129), Expect = 7.440e-7
Identity = 27/57 (47.37%), Postives = 35/57 (61.40%), Query Frame = 1 
Query:    7 IAQLPLEQYFKSDYRELIRDERDNVLDAFTQLPRHLDQTGQLVDLIGNSYPCQTEKV 177
            + +LP E +F +DYR LIRD   NVLD  TQ+  HL     LVD+ GN YP   +K+
Sbjct:  556 LQKLPTELFFHTDYRPLIRDSDQNVLDEQTQVAPHLMPPPFLVDIDGNPYPPNLQKL 612
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig179412.4757.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KTA2_9PHAE8.320e-1675.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LEP1_ECTSI5.810e-1375.56WD-repeat protein, putative n=1 Tax=Ectocarpus sil... [more]
UPI001E276FB18.320e-849.12bromodomain and WD repeat-containing protein 3 n=1... [more]
A0A023F021_TRIIF1.140e-745.61Uncharacterized protein (Fragment) n=2 Tax=Triatom... [more]
D6X562_TRICA2.120e-746.55Bromodomain and WD repeat-containing protein 3-lik... [more]
A0A7J7A0P3_9COLE2.910e-747.37Uncharacterized protein n=1 Tax=Lamprigera yunnana... [more]
A0A8K0GBJ4_9COLE3.980e-742.86Uncharacterized protein n=1 Tax=Ignelater luminosu... [more]
A0A8I6R6G6_CIMLE3.980e-748.15Uncharacterized protein n=1 Tax=Cimex lectularius ... [more]
N6TSS9_DENPD7.420e-747.27Uncharacterized protein (Fragment) n=2 Tax=Dendroc... [more]
UPI001D06A5567.440e-747.37bromodomain and WD repeat-containing protein 1 n=1... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig179412contigH-elongata_contig179412:877..1083 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.9
Seed ortholog evalue3.2e-11
Seed eggNOG ortholog2880.D8LEP1
KEGG koko:K02606,ko:K11797,ko:K11798
KEGG Pathwayko04110,ko04111,ko04113,map04110,map04111,map04113
KEGG ModuleM00284
GOsGO:0001932,GO:0001934,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006325,GO:0006355,GO:0006357,GO:0006606,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0007010,GO:0007088,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007346,GO:0008104,GO:0008150,GO:0008284,GO:0008286,GO:0008360,GO:0009719,GO:0009725,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010033,GO:0010243,GO:0010468,GO:0010556,GO:0010557,GO:0010562,GO:0010564,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010647,GO:0010648,GO:0010799,GO:0010800,GO:0010941,GO:0015031,GO:0015833,GO:0016043,GO:0017038,GO:0019219,GO:0019220,GO:0019221,GO:0019222,GO:0022603,GO:0022604,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032868,GO:0032869,GO:0032870,GO:0033036,GO:0033043,GO:0033135,GO:0033138,GO:0033365,GO:0034097,GO:0034504,GO:0034613,GO:0038111,GO:0040008,GO:0042127,GO:0042221,GO:0042325,GO:0042327,GO:0042393,GO:0042886,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043434,GO:0043567,GO:0043568,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045787,GO:0045840,GO:0045893,GO:0045931,GO:0045935,GO:0045937,GO:0045944,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051169,GO:0051170,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051276,GO:0051641,GO:0051649,GO:0051716,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0060255,GO:0060548,GO:0065007,GO:0065008,GO:0070013,GO:0070577,GO:0070727,GO:0070887,GO:0071310,GO:0071345,GO:0071375,GO:0071417,GO:0071495,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0080090,GO:0090068,GO:0098760,GO:0098761,GO:0140030,GO:0140033,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141,GO:2001233,GO:2001234,GO:2001236,GO:2001237
EggNOG free text desc.regulation of cell shape
EggNOG OGsCOG2319@1,COG5141@1,KOG0644@2759,KOG0955@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032,ko04121
Hectar predicted targeting categoryother localisation
Exons1
Model size207
Cds size207
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930035.6860654-CDS-H-elongata_contig179412:876..10831622930035.6860654-CDS-H-elongata_contig179412:876..1083Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig179412 877..1083 -
1691679255.9593966-CDS-H-elongata_contig179412:876..10831691679255.9593966-CDS-H-elongata_contig179412:876..1083Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig179412 877..1083 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig179412.4757.1prot_H-elongata_contig179412.4757.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig179412 877..1083 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig179412.4757.1

>prot_H-elongata_contig179412.4757.1 ID=prot_H-elongata_contig179412.4757.1|Name=mRNA_H-elongata_contig179412.4757.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=69bp
MLIAQLPLEQYFKSDYRELIRDERDNVLDAFTQLPRHLDQTGQLVDLIGN
SYPCQTEKVPLWIMVTQL*
back to top

mRNA from alignment at H-elongata_contig179412:877..1083-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig179412.4757.1 ID=mRNA_H-elongata_contig179412.4757.1|Name=mRNA_H-elongata_contig179412.4757.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=207bp|location=Sequence derived from alignment at H-elongata_contig179412:877..1083- (Himanthalia elongata Himel1 dioecious)
ATGTTGATTGCGCAGCTGCCATTGGAGCAGTACTTTAAATCTGACTATCG
GGAACTGATTAGGGACGAGCGGGACAACGTGCTCGACGCCTTCACGCAGC
TGCCTCGTCACCTGGACCAGACCGGTCAGCTCGTGGACCTCATCGGGAAC
TCGTATCCGTGCCAGACCGAAAAGGTTCCTCTTTGGATTATGGTTACGCA
ATTATAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig179412:877..1083-

>mRNA_H-elongata_contig179412.4757.1 ID=mRNA_H-elongata_contig179412.4757.1|Name=mRNA_H-elongata_contig179412.4757.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=414bp|location=Sequence derived from alignment at H-elongata_contig179412:877..1083- (Himanthalia elongata Himel1 dioecious)
ATGTTGATTGCGCAGCTGCCATTGGAGCAGTACTTTAAATCTGACTATCG
GGAACTGATTAGGGACGAGCGGGACAACGTGCTCGACGCCTTCACGCAGC
TGCCTCGTCACCTGGACCAGACCGGTCAGCTCGTGGACCTCATCGGGAAC
TCGTATCCGTGCCAGACCGAAAAGGTTCCTCTTTGGATTATGGTTACGCA
ATTATAGATGTTGATTGCGCAGCTGCCATTGGAGCAGTACTTTAAATCTG
ACTATCGGGAACTGATTAGGGACGAGCGGGACAACGTGCTCGACGCCTTC
ACGCAGCTGCCTCGTCACCTGGACCAGACCGGTCAGCTCGTGGACCTCAT
CGGGAACTCGTATCCGTGCCAGACCGAAAAGGTTCCTCTTTGGATTATGG
TTACGCAATTATAG
back to top