mRNA_H-elongata_contig179228.4746.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig179228.4746.1
Unique NamemRNA_H-elongata_contig179228.4746.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig179228.4746.1 vs. uniprot
Match: D7FX78_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX78_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 1.920e-21
Identity = 44/48 (91.67%), Postives = 47/48 (97.92%), Query Frame = 1 
Query:    1 QVGLKALYEIAKIKNAEQHSVLLPLESVCRSVRATALSMGLEIVDDRE 144
            +VGLKALYEIAK+KNAE HSVLLPLESVC+SVRATALSMGLEIVDDRE
Sbjct:   98 KVGLKALYEIAKVKNAEDHSVLLPLESVCKSVRATALSMGLEIVDDRE 145
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BLAST of mRNA_H-elongata_contig179228.4746.1 vs. uniprot
Match: A0A7S1BAR1_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BAR1_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 1.260e-6
Identity = 22/46 (47.83%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:    4 VGLKALYEIAKIKNAEQHSVLLPLESVCRSVRATALSMGLEIVDDR 141
            + ++A+YEIAKIK  + H   +P+ SV +S+  TALSMG+E++DD+
Sbjct:  100 IRVEAVYEIAKIKVQDTHLADMPIRSVAKSIVGTALSMGVEVIDDK 145
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BLAST of mRNA_H-elongata_contig179228.4746.1 vs. uniprot
Match: A0A0D6R8R4_ARACU (Uncharacterized protein n=1 Tax=Araucaria cunninghamii TaxID=56994 RepID=A0A0D6R8R4_ARACU)

HSP 1 Score: 51.6 bits (122), Expect = 1.340e-6
Identity = 22/43 (51.16%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:    4 VGLKALYEIAKIKNAEQHSVLLPLESVCRSVRATALSMGLEIV 132
            + LK +YEIAK+K ++ +S  +PLES+C+S+ ATA +MG++IV
Sbjct:  109 LSLKHVYEIAKVKQSDPYSQNMPLESICKSIIATARTMGIQIV 151
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BLAST of mRNA_H-elongata_contig179228.4746.1 vs. uniprot
Match: W9RKA1_9ROSA (60S ribosomal protein L19 n=2 Tax=Morus notabilis TaxID=981085 RepID=W9RKA1_9ROSA)

HSP 1 Score: 50.1 bits (118), Expect = 2.540e-6
Identity = 22/47 (46.81%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:    4 VGLKALYEIAKIKNAEQHSVLLPLESVCRSVRATALSMGLEIVDDRE 144
            + +K +YEIAKIK ++     +PLES+C+S+ ATA SMG+++V+  E
Sbjct:   66 LSVKHIYEIAKIKQSDPFCQYMPLESICKSIIATANSMGIKVVNHLE 112
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BLAST of mRNA_H-elongata_contig179228.4746.1 vs. uniprot
Match: M2XF01_GALSU (50S ribosomal protein L11 (Mitochondrial) n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XF01_GALSU)

HSP 1 Score: 49.7 bits (117), Expect = 6.480e-6
Identity = 23/43 (53.49%), Postives = 30/43 (69.77%), Query Frame = 1 
Query:    1 QVGLKALYEIAKIKNAEQHSVLLPLESVCRSVRATALSMGLEI 129
            +V LKA+YEI KIK  ++H     LE +CRS+ ATA  MGLE+
Sbjct:  104 KVPLKAIYEIGKIKQRDEHMKYKSLEIICRSIYATAKGMGLEV 146
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BLAST of mRNA_H-elongata_contig179228.4746.1 vs. uniprot
Match: A0A7S1T4C2_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1T4C2_9RHOD)

HSP 1 Score: 49.7 bits (117), Expect = 8.770e-6
Identity = 20/49 (40.82%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:    4 VGLKALYEIAKIKNAEQHSVLLPLESVCRSVRATALSMGLEIVDDREHE 150
            V ++A+YEIA+IK  ++H   +PLE +C+S+  TA + GL+++ DR+++
Sbjct:  113 VPIQAVYEIARIKQQDEHLRHVPLEGLCKSILGTATTCGLQVLFDRDYK 161
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BLAST of mRNA_H-elongata_contig179228.4746.1 vs. uniprot
Match: A0A0W4ZVT1_PNEJ7 (Ribosomal protein L11 n=1 Tax=Pneumocystis jirovecii (strain RU7) TaxID=1408657 RepID=A0A0W4ZVT1_PNEJ7)

HSP 1 Score: 49.3 bits (116), Expect = 8.970e-6
Identity = 23/43 (53.49%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:    4 VGLKALYEIAKIKNAEQHSVLLPLESVCRSVRATALSMGLEIV 132
            + LK +YEIAKIK+ +++   +PLESVCRSV A+A S+G+++V
Sbjct:  103 LSLKHIYEIAKIKHKDENIQGIPLESVCRSVIASAKSVGIKVV 145
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BLAST of mRNA_H-elongata_contig179228.4746.1 vs. uniprot
Match: A0A1D2VJ24_9ASCO (Ribosomal protein L11 n=1 Tax=Ascoidea rubescens DSM 1968 TaxID=1344418 RepID=A0A1D2VJ24_9ASCO)

HSP 1 Score: 49.3 bits (116), Expect = 9.520e-6
Identity = 23/42 (54.76%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:    4 VGLKALYEIAKIKNAEQHSVLLPLESVCRSVRATALSMGLEI 129
            V LK +YEIAKIK  +Q+   L LE++C+S+ ATA SMG+E+
Sbjct:  107 VSLKHIYEIAKIKKTDQNHENLNLEAICKSIIATAKSMGVEV 148
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BLAST of mRNA_H-elongata_contig179228.4746.1 vs. uniprot
Match: A0A7S2CHZ2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CHZ2_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 1.620e-5
Identity = 21/47 (44.68%), Postives = 33/47 (70.21%), Query Frame = 1 
Query:    1 QVGLKALYEIAKIKNAEQHSVLLPLESVCRSVRATALSMGLEIVDDR 141
            +V LK ++EIAKIK  ++H   +PL  +CRS+  TA SMG+ ++ D+
Sbjct:  109 EVTLKQVFEIAKIKQQDEHLAHVPLRGLCRSIVGTAGSMGITVISDQ 155
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BLAST of mRNA_H-elongata_contig179228.4746.1 vs. uniprot
Match: B0CYU6_LACBS (Predicted protein n=2 Tax=Laccaria TaxID=29882 RepID=B0CYU6_LACBS)

HSP 1 Score: 48.5 bits (114), Expect = 1.820e-5
Identity = 21/43 (48.84%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:    4 VGLKALYEIAKIKNAEQHSVLLPLESVCRSVRATALSMGLEIV 132
            + LK +YEIAKIK+A++H   LPLES+ R +  +A S+G+++V
Sbjct:  105 ITLKHVYEIAKIKSADEHMKSLPLESIARMIVGSARSLGIQVV 147
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig179228.4746.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D7FX78_ECTSI1.920e-2191.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S1BAR1_9STRA1.260e-647.83Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A0D6R8R4_ARACU1.340e-651.16Uncharacterized protein n=1 Tax=Araucaria cunningh... [more]
W9RKA1_9ROSA2.540e-646.8160S ribosomal protein L19 n=2 Tax=Morus notabilis ... [more]
M2XF01_GALSU6.480e-653.4950S ribosomal protein L11 (Mitochondrial) n=1 Tax=... [more]
A0A7S1T4C2_9RHOD8.770e-640.82Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A0W4ZVT1_PNEJ78.970e-653.49Ribosomal protein L11 n=1 Tax=Pneumocystis jirovec... [more]
A0A1D2VJ24_9ASCO9.520e-654.76Ribosomal protein L11 n=1 Tax=Ascoidea rubescens D... [more]
A0A7S2CHZ2_9STRA1.620e-544.68Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
B0CYU6_LACBS1.820e-548.84Predicted protein n=2 Tax=Laccaria TaxID=29882 Rep... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig179228contigH-elongata_contig179228:988..1158 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.0
Seed ortholog evalue7.9e-16
Seed eggNOG ortholog2880.D7FX78
Preferred nameMRPL11
KEGG koko:K02867,ko:K03260
KEGG Pathwayko03010,ko03013,ko05416,map03010,map03013,map05416
KEGG ModuleM00178,M00179,M00428
GOsGO:0000027,GO:0000313,GO:0000315,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005761,GO:0005762,GO:0005829,GO:0005840,GO:0006412,GO:0006414,GO:0006415,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0016043,GO:0019538,GO:0019843,GO:0019866,GO:0022411,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0031090,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032543,GO:0032984,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070013,GO:0070125,GO:0070126,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:0098798,GO:0140053,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.rRNA binding
EggNOG OGsCOG0080@1,KOG3257@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03012,ko03019
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionRibosomal protein L11, bacterial-type
Ec32 orthologEc-10_004590.1
Exons1
Model size171
Cds size171
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930034.7397218-CDS-H-elongata_contig179228:987..11581622930034.7397218-CDS-H-elongata_contig179228:987..1158Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig179228 988..1158 -
1691679255.5146549-CDS-H-elongata_contig179228:987..11581691679255.5146549-CDS-H-elongata_contig179228:987..1158Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig179228 988..1158 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig179228.4746.1prot_H-elongata_contig179228.4746.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig179228 988..1158 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig179228.4746.1

>prot_H-elongata_contig179228.4746.1 ID=prot_H-elongata_contig179228.4746.1|Name=mRNA_H-elongata_contig179228.4746.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=57bp
QVGLKALYEIAKIKNAEQHSVLLPLESVCRSVRATALSMGLEIVDDREHE
NKIKVS*
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mRNA from alignment at H-elongata_contig179228:988..1158-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig179228.4746.1 ID=mRNA_H-elongata_contig179228.4746.1|Name=mRNA_H-elongata_contig179228.4746.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=171bp|location=Sequence derived from alignment at H-elongata_contig179228:988..1158- (Himanthalia elongata Himel1 dioecious)
CAGGTTGGATTAAAGGCGTTGTACGAGATCGCGAAAATCAAGAATGCCGA
GCAGCATAGCGTCTTGCTGCCCCTCGAGAGCGTGTGCCGATCAGTGAGAG
CTACGGCGTTGTCCATGGGGCTGGAGATCGTGGACGACCGAGAACATGAA
AATAAAATCAAGGTCTCCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig179228:988..1158-

>mRNA_H-elongata_contig179228.4746.1 ID=mRNA_H-elongata_contig179228.4746.1|Name=mRNA_H-elongata_contig179228.4746.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=342bp|location=Sequence derived from alignment at H-elongata_contig179228:988..1158- (Himanthalia elongata Himel1 dioecious)
CAGGTTGGATTAAAGGCGTTGTACGAGATCGCGAAAATCAAGAATGCCGA
GCAGCATAGCGTCTTGCTGCCCCTCGAGAGCGTGTGCCGATCAGTGAGAG
CTACGGCGTTGTCCATGGGGCTGGAGATCGTGGACGACCGAGAACATGAA
AATAAAATCAAGGTCTCCTGACAGGTTGGATTAAAGGCGTTGTACGAGAT
CGCGAAAATCAAGAATGCCGAGCAGCATAGCGTCTTGCTGCCCCTCGAGA
GCGTGTGCCGATCAGTGAGAGCTACGGCGTTGTCCATGGGGCTGGAGATC
GTGGACGACCGAGAACATGAAAATAAAATCAAGGTCTCCTGA
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