mRNA_H-elongata_contig178816.4724.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig178816.4724.1
Unique NamemRNA_H-elongata_contig178816.4724.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig178816.4724.1 vs. uniprot
Match: A0A4Y9XV14_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Dentipellis fragilis TaxID=205917 RepID=A0A4Y9XV14_9AGAM)

HSP 1 Score: 67.8 bits (164), Expect = 1.840e-11
Identity = 37/77 (48.05%), Postives = 47/77 (61.04%), Query Frame = 1 
Query:    1 IKDLGETSYYLGYHITRDRNAGTLTFDQHQYIQTMAERFGVTK-TSIIPSVAGGKALSKSDSPQTDAEVEEMRQIPY 228
            ++DLGETSY LG HITRDR    L   Q +YI  M ER+ + + T +   +  G  LSK+ SP TD E EEM  +PY
Sbjct:  221 LRDLGETSYLLGIHITRDRGQHRLYLSQRKYILEMLERYHMGECTPVTTPMDPGLRLSKAMSPATDEEREEMAGVPY 297
[Close]
BLAST of mRNA_H-elongata_contig178816.4724.1 vs. uniprot
Match: A0A4Y9YCU4_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Dentipellis fragilis TaxID=205917 RepID=A0A4Y9YCU4_9AGAM)

HSP 1 Score: 67.8 bits (164), Expect = 1.870e-11
Identity = 37/77 (48.05%), Postives = 47/77 (61.04%), Query Frame = 1 
Query:    1 IKDLGETSYYLGYHITRDRNAGTLTFDQHQYIQTMAERFGVTK-TSIIPSVAGGKALSKSDSPQTDAEVEEMRQIPY 228
            ++DLGETSY LG HITRDR    L   Q +YI  M ER+ + + T +   +  G  LSK+ SP TD E EEM  +PY
Sbjct:  442 LRDLGETSYLLGIHITRDRGQHRLYLSQRKYILEMLERYHMGECTPVTTPMDPGLRLSKAMSPATDEEREEMAGVPY 518
[Close]
BLAST of mRNA_H-elongata_contig178816.4724.1 vs. uniprot
Match: A0A4Y9XV77_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Dentipellis fragilis TaxID=205917 RepID=A0A4Y9XV77_9AGAM)

HSP 1 Score: 66.2 bits (160), Expect = 6.520e-11
Identity = 36/77 (46.75%), Postives = 47/77 (61.04%), Query Frame = 1 
Query:    1 IKDLGETSYYLGYHITRDRNAGTLTFDQHQYIQTMAERFGVTK-TSIIPSVAGGKALSKSDSPQTDAEVEEMRQIPY 228
            ++DLGETSY LG HITRDR    L   Q +YI  M E++ + + T +   +  G  LSK+ SP TD E EEM  +PY
Sbjct:  201 LRDLGETSYLLGIHITRDRGQHRLYLSQRKYILEMLEQYHMGECTPVTTPMDPGLRLSKAMSPATDEEREEMAGVPY 277
[Close]
BLAST of mRNA_H-elongata_contig178816.4724.1 vs. uniprot
Match: E2LZP6_MONPE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Moniliophthora perniciosa (strain FA553 / isolate CP02) TaxID=554373 RepID=E2LZP6_MONPE)

HSP 1 Score: 65.5 bits (158), Expect = 1.210e-10
Identity = 39/78 (50.00%), Postives = 46/78 (58.97%), Query Frame = 1 
Query:    1 IKDLGETSYYLGYHITRDRNAGTLTFDQHQYIQTMAERFGVT--KTSIIPSVAGGKALSKSDSPQTDAEVEEMRQIPY 228
            ++DLG TSY LG  ITR+R    L   Q QYI    E FG+T  K +  P +     LSKS SPQT  EVEEM +IPY
Sbjct:  310 LRDLGATSYLLGVEITRNRPERKLYLSQRQYIINKLEEFGMTDCKPATTP-MTPNLILSKSQSPQTPDEVEEMSEIPY 386
[Close]
BLAST of mRNA_H-elongata_contig178816.4724.1 vs. uniprot
Match: A0A060SV79_PYCCI (Uncharacterized protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SV79_PYCCI)

HSP 1 Score: 63.9 bits (154), Expect = 4.310e-10
Identity = 33/79 (41.77%), Postives = 47/79 (59.49%), Query Frame = 1 
Query:    1 IKDLGETSYYLGYHITRDRNAGTLTFDQHQYIQTMAERFGVTKTSIIPS-VAGGKALSKSDSPQTDAEVEEMRQIPYRE 234
            + DLG  S+ LG  I+RD  AGTL+  QH YI  +  RF  T    + + +   + LSK+  P++ AEV  MR++PYRE
Sbjct:  883 LTDLGPVSWLLGIKISRDLTAGTLSLSQHAYIDALLARFNFTDLKPVSTPMDPHQLLSKTQCPESPAEVARMRRVPYRE 961
[Close]
BLAST of mRNA_H-elongata_contig178816.4724.1 vs. uniprot
Match: A0A060SPD4_PYCCI (Integrase catalytic domain-containing protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SPD4_PYCCI)

HSP 1 Score: 61.6 bits (148), Expect = 2.820e-9
Identity = 33/79 (41.77%), Postives = 46/79 (58.23%), Query Frame = 1 
Query:    1 IKDLGETSYYLGYHITRDRNAGTLTFDQHQYIQTMAERFGVTKTSIIPS-VAGGKALSKSDSPQTDAEVEEMRQIPYRE 234
            I DLG  S+ LG  I+ D  AGTL+  QH YI+ +  RF  T    +   +   + LSK+  P++ AEV  MR++PYRE
Sbjct: 1021 ITDLGPVSWLLGIKISCDLEAGTLSLSQHAYIEALLARFNFTDLKPVSMPMDPHQLLSKTQCPESPAEVARMRRVPYRE 1099
[Close]
BLAST of mRNA_H-elongata_contig178816.4724.1 vs. uniprot
Match: A0A060S8R4_PYCCI (Uncharacterized protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060S8R4_PYCCI)

HSP 1 Score: 61.2 bits (147), Expect = 2.870e-9
Identity = 32/79 (40.51%), Postives = 46/79 (58.23%), Query Frame = 1 
Query:    1 IKDLGETSYYLGYHITRDRNAGTLTFDQHQYIQTMAERFGVTKTSIIPS-VAGGKALSKSDSPQTDAEVEEMRQIPYRE 234
            + DLG  S+ LG  I+RD  AGT +  QH YI  +  RF  T    + + +   + LSK+  P++ AEV  MR++PYRE
Sbjct:    1 MTDLGPVSWLLGIKISRDLEAGTFSLSQHAYIDALLARFNFTDLKPMSTPMDPHQLLSKTQCPESPAEVARMRRVPYRE 79
[Close]
BLAST of mRNA_H-elongata_contig178816.4724.1 vs. uniprot
Match: A0A4Y9XVV8_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Dentipellis fragilis TaxID=205917 RepID=A0A4Y9XVV8_9AGAM)

HSP 1 Score: 60.8 bits (146), Expect = 5.250e-9
Identity = 34/77 (44.16%), Postives = 44/77 (57.14%), Query Frame = 1 
Query:    1 IKDLGETSYYLGYHITRDRNAGTLTFDQHQYIQTMAERFGVTKT-SIIPSVAGGKALSKSDSPQTDAEVEEMRQIPY 228
            ++DLGETSY LG HIT DR    L   Q +YI  M +R+ + +   +   +  G  LSK  SP TD E EEM  +PY
Sbjct: 1035 LRDLGETSYLLGIHITHDRGQHRLYLSQRKYILEMLKRYHMGECIPVTTPMDPGLRLSKVMSPATDEEREEMAGVPY 1111
[Close]
BLAST of mRNA_H-elongata_contig178816.4724.1 vs. uniprot
Match: A0A4Y9XTA0_9AGAM (Glutamate decarboxylase n=1 Tax=Dentipellis fragilis TaxID=205917 RepID=A0A4Y9XTA0_9AGAM)

HSP 1 Score: 60.5 bits (145), Expect = 7.200e-9
Identity = 34/72 (47.22%), Postives = 43/72 (59.72%), Query Frame = 1 
Query:    1 IKDLGETSYYLGYHITRDRNAGTLTFDQHQYIQTMAERFGVTK-TSIIPSVAGGKALSKSDSPQTDAEVEEM 213
            ++DLGETSY LG HITRD     L   Q +YI  M ER+ + + T +   +  G  LSK+ SP TD E EEM
Sbjct:  270 LRDLGETSYLLGIHITRDHGQHRLYLSQRKYILEMLERYHMGECTPVTTPMDPGLRLSKAISPATDEEREEM 341
[Close]
BLAST of mRNA_H-elongata_contig178816.4724.1 vs. uniprot
Match: A0A6A3J8V8_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3J8V8_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.280e-8
Identity = 34/79 (43.04%), Postives = 44/79 (55.70%), Query Frame = 1 
Query:    1 IKDLGETSYYLGYHITRDRNAGTLTFDQHQYIQTMAERFGV--TKTSIIPSVAGGKALSKSDSPQTDAEVEEMRQIPYR 231
            +K+LGE  + LG  I  DR  GTL   Q +Y+  +  RF     K  + P   G K LSK+ SP TDAE E+MR  PY+
Sbjct:  132 MKELGEAKFILGMEIDHDRTTGTLMVKQTRYVDDVVNRFNQQDAKAVVNPCETGMK-LSKTQSPATDAEREDMRGKPYK 209
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig178816.4724.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A4Y9XV14_9AGAM1.840e-1148.05Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A4Y9YCU4_9AGAM1.870e-1148.05Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A4Y9XV77_9AGAM6.520e-1146.75Reverse transcriptase Ty1/copia-type domain-contai... [more]
E2LZP6_MONPE1.210e-1050.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A060SV79_PYCCI4.310e-1041.77Uncharacterized protein n=1 Tax=Pycnoporus cinnaba... [more]
A0A060SPD4_PYCCI2.820e-941.77Integrase catalytic domain-containing protein n=1 ... [more]
A0A060S8R4_PYCCI2.870e-940.51Uncharacterized protein n=1 Tax=Pycnoporus cinnaba... [more]
A0A4Y9XVV8_9AGAM5.250e-944.16Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A4Y9XTA0_9AGAM7.200e-947.22Glutamate decarboxylase n=1 Tax=Dentipellis fragil... [more]
A0A6A3J8V8_9STRA1.280e-843.04Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig178816contigH-elongata_contig178816:1054..1287 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score65.9
Seed ortholog evalue9.8e-09
Seed eggNOG ortholog2711.XP_006471604.1
KEGG rclassRC00478,RC00661
KEGG koko:K04125
KEGG ReactionR03008,R03809,R06337,R06338
KEGG Pathwayko00904,ko01110,map00904,map01110
GOsGO:0003674,GO:0003824,GO:0006082,GO:0006629,GO:0006720,GO:0006721,GO:0008150,GO:0008152,GO:0008300,GO:0009056,GO:0009314,GO:0009416,GO:0009628,GO:0009639,GO:0009685,GO:0009987,GO:0010817,GO:0016042,GO:0016054,GO:0016101,GO:0016103,GO:0016115,GO:0016491,GO:0016705,GO:0016706,GO:0019752,GO:0042445,GO:0042447,GO:0043436,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0045487,GO:0045543,GO:0046395,GO:0050896,GO:0051213,GO:0052634,GO:0055114,GO:0065007,GO:0065008,GO:0071704,GO:1901575
EggNOG free text desc.Belongs to the iron ascorbate-dependent oxidoreductase family
EggNOG OGs37R49@33090,3G77N@35493,COG2801@1,COG3491@1,KOG0017@2759,KOG0143@2759
EC1.14.11.13
COG Functional cat.Q
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size234
Cds size234
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930032.0922499-CDS-H-elongata_contig178816:1053..12871622930032.0922499-CDS-H-elongata_contig178816:1053..1287Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig178816 1054..1287 -
1691679254.1958883-CDS-H-elongata_contig178816:1053..12871691679254.1958883-CDS-H-elongata_contig178816:1053..1287Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig178816 1054..1287 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig178816.4724.1prot_H-elongata_contig178816.4724.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig178816 1054..1287 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig178816.4724.1

>prot_H-elongata_contig178816.4724.1 ID=prot_H-elongata_contig178816.4724.1|Name=mRNA_H-elongata_contig178816.4724.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=78bp
IKDLGETSYYLGYHITRDRNAGTLTFDQHQYIQTMAERFGVTKTSIIPSV
AGGKALSKSDSPQTDAEVEEMRQIPYRE
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mRNA from alignment at H-elongata_contig178816:1054..1287-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig178816.4724.1 ID=mRNA_H-elongata_contig178816.4724.1|Name=mRNA_H-elongata_contig178816.4724.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=234bp|location=Sequence derived from alignment at H-elongata_contig178816:1054..1287- (Himanthalia elongata Himel1 dioecious)
ATCAAGGATCTGGGGGAGACTTCGTATTACCTGGGATACCACATCACGCG
GGACCGGAACGCCGGGACACTGACGTTCGACCAGCATCAGTACATACAGA
CTATGGCGGAACGTTTTGGCGTGACGAAGACCAGCATCATCCCGTCCGTA
GCAGGAGGAAAAGCCCTTTCGAAATCAGACAGCCCGCAAACGGACGCAGA
GGTTGAAGAAATGCGCCAGATTCCCTACCGAGAA
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Coding sequence (CDS) from alignment at H-elongata_contig178816:1054..1287-

>mRNA_H-elongata_contig178816.4724.1 ID=mRNA_H-elongata_contig178816.4724.1|Name=mRNA_H-elongata_contig178816.4724.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=468bp|location=Sequence derived from alignment at H-elongata_contig178816:1054..1287- (Himanthalia elongata Himel1 dioecious)
ATCAAGGATCTGGGGGAGACTTCGTATTACCTGGGATACCACATCACGCG
GGACCGGAACGCCGGGACACTGACGTTCGACCAGCATCAGTACATACAGA
CTATGGCGGAACGTTTTGGCGTGACGAAGACCAGCATCATCCCGTCCGTA
GCAGGAGGAAAAGCCCTTTCGAAATCAGACAGCCCGCAAACGGACGCAGA
GGTTGAAGAAATGCGCCAGATTCCCTACCGAGAAATCAAGGATCTGGGGG
AGACTTCGTATTACCTGGGATACCACATCACGCGGGACCGGAACGCCGGG
ACACTGACGTTCGACCAGCATCAGTACATACAGACTATGGCGGAACGTTT
TGGCGTGACGAAGACCAGCATCATCCCGTCCGTAGCAGGAGGAAAAGCCC
TTTCGAAATCAGACAGCCCGCAAACGGACGCAGAGGTTGAAGAAATGCGC
CAGATTCCCTACCGAGAA
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