mRNA_H-elongata_contig178343.4702.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig178343.4702.1
Unique NamemRNA_H-elongata_contig178343.4702.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig178343.4702.1 vs. uniprot
Match: D8LD91_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD91_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 1.020e-35
Identity = 61/73 (83.56%), Postives = 67/73 (91.78%), Query Frame = 1 
Query:    1 EGQYFYAELPGDVVGSRVRLLHRGGNTDPYGRQRNVPLQFGRDVAARLLSMPERAHWRDCALPKNKEILQADI 219
            +G YFYAELPGDVVGSRVRL+HRGGN D  G +R+VPLQFGRDVAA+LLSMPERAHWRDC+LPK KEILQADI
Sbjct:  394 DGPYFYAELPGDVVGSRVRLIHRGGNIDARGNRRHVPLQFGRDVAAKLLSMPERAHWRDCSLPKAKEILQADI 466
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BLAST of mRNA_H-elongata_contig178343.4702.1 vs. uniprot
Match: A0A836CFA8_9STRA (CwfJ C-terminus 1-domain-containing protein-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFA8_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 2.650e-13
Identity = 32/64 (50.00%), Postives = 43/64 (67.19%), Query Frame = 1 
Query:   10 YFYAELPGDVVGSRVRLLHRGGNTDPYGRQRNVPLQFGRDVAARLLSMPERAHWRDCALPKNKE 201
            Y YAE+PG+  GS +RL+H          + ++PLQF RD+AARLL MP+RA W+ C L K+KE
Sbjct:  746 YLYAEVPGEAPGSIIRLVHETSEALNDRGRPSIPLQFARDIAARLLLMPDRAQWKTCELSKDKE 809
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BLAST of mRNA_H-elongata_contig178343.4702.1 vs. uniprot
Match: A0A6P5FSW7_ANACO (zinc finger CCCH domain-containing protein 59 n=4 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5FSW7_ANACO)

HSP 1 Score: 55.5 bits (132), Expect = 3.340e-7
Identity = 28/68 (41.18%), Postives = 39/68 (57.35%), Query Frame = 1 
Query:   13 FYAELPGDVVGSRVRLLHRGGNTDPYGRQRNVPLQFGRDVAARLLSMPERAHWRDCALPKNKEILQAD 216
            FY ELP   +     LLHR  + + +      P+QFGR+V A LL MP+RA WR+C + K  E++  D
Sbjct:  538 FYVELPEGKI-----LLHRVDDNEKF------PVQFGREVLAGLLRMPDRADWRNCKVTKEDEMMMVD 594
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BLAST of mRNA_H-elongata_contig178343.4702.1 vs. uniprot
Match: A0A833RA64_9POAL (Zinc finger CCCH domain-containing protein 59 isoform X1 n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833RA64_9POAL)

HSP 1 Score: 54.3 bits (129), Expect = 8.550e-7
Identity = 27/69 (39.13%), Postives = 39/69 (56.52%), Query Frame = 1 
Query:   13 FYAELPGDVVGSRVRLLHRGGNTDPYGRQRNVPLQFGRDVAARLLSMPERAHWRDCALPKNKEILQADI 219
            FY ELPG  +     L+H   + + +      P+QFGR+V A LL MP+RA WR C L K +E+   ++
Sbjct:  546 FYVELPGKKI-----LVHSVDDNEKF------PVQFGREVLAGLLGMPDRADWRKCKLSKEEEMEMVNV 603
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BLAST of mRNA_H-elongata_contig178343.4702.1 vs. uniprot
Match: A0A0J8B6N2_BETVV (Uncharacterized protein n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=A0A0J8B6N2_BETVV)

HSP 1 Score: 53.9 bits (128), Expect = 1.170e-6
Identity = 26/70 (37.14%), Postives = 40/70 (57.14%), Query Frame = 1 
Query:   10 YFYAEL-PGDVVGSRVRLLHRGGNTDPYGRQRNVPLQFGRDVAARLLSMPERAHWRDCALPKNKEILQAD 216
            +FY EL  G ++G  +                N P+QFGR+V A LL MP+RA WR+C L K++E+++ +
Sbjct:  537 FFYVELHDGTILGHTI------------DENENFPVQFGREVMAGLLKMPDRADWRNCKLSKDEEVIKVE 594
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BLAST of mRNA_H-elongata_contig178343.4702.1 vs. uniprot
Match: A0A5J9TD57_9POAL (Uncharacterized protein n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9TD57_9POAL)

HSP 1 Score: 52.8 bits (125), Expect = 2.990e-6
Identity = 29/68 (42.65%), Postives = 37/68 (54.41%), Query Frame = 1 
Query:   13 FYAELPGDVVGSRVRLLHRGGNTDPYGRQRNVPLQFGRDVAARLLSMPERAHWRDCALPKNKEILQAD 216
            FY ELP   +     LLH+    + +      P QFGR+V A LLSM +RA WR+C L K +EI   D
Sbjct:  534 FYVELPEGRI-----LLHKIDGAEKF------PAQFGREVLAGLLSMADRADWRNCKLSKEEEIQMVD 590
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BLAST of mRNA_H-elongata_contig178343.4702.1 vs. uniprot
Match: B9RK71_RICCO (Nucleic acid binding protein, putative n=3 Tax=Ricinus communis TaxID=3988 RepID=B9RK71_RICCO)

HSP 1 Score: 52.8 bits (125), Expect = 2.990e-6
Identity = 29/69 (42.03%), Postives = 35/69 (50.72%), Query Frame = 1 
Query:   10 YFYAELPGDVVGSRVRLLHRGGNTDPYGRQRNVPLQFGRDVAARLLSMPERAHWRDCALPKNKEILQAD 216
            +FY ELP   V     L H     + +      P QFGR+V A LL+MPERA WR C L K +E    D
Sbjct:  536 FFYVELPDGTV-----LSHSVKENESF------PAQFGREVLAGLLNMPERADWRTCTLSKEEETKMID 593
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BLAST of mRNA_H-elongata_contig178343.4702.1 vs. uniprot
Match: A0A2P2JC73_RHIMU (Uncharacterized protein MANES_03G034200 n=2 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2JC73_RHIMU)

HSP 1 Score: 52.8 bits (125), Expect = 2.990e-6
Identity = 27/64 (42.19%), Postives = 33/64 (51.56%), Query Frame = 1 
Query:   10 YFYAELPGDVVGSRVRLLHRGGNTDPYGRQRNVPLQFGRDVAARLLSMPERAHWRDCALPKNKE 201
            +FY ELPG  + S +                  P+QFGR+V A LL MPERA WR C L K +E
Sbjct:  537 FFYVELPGGTILSCL-----------VEENERFPIQFGREVLAGLLKMPERADWRSCMLNKEEE 589
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BLAST of mRNA_H-elongata_contig178343.4702.1 vs. uniprot
Match: A0A2K2A2U4_POPTR (Uncharacterized protein n=19 Tax=Saliceae TaxID=238069 RepID=A0A2K2A2U4_POPTR)

HSP 1 Score: 52.8 bits (125), Expect = 2.990e-6
Identity = 29/69 (42.03%), Postives = 38/69 (55.07%), Query Frame = 1 
Query:   10 YFYAELPGDVVGSRVRLLHRGGNTDPYGRQRNVPLQFGRDVAARLLSMPERAHWRDCALPKNKEILQAD 216
            +FY EL    +     L H     +      N P QFGR+V A LL+MPERA WR+CAL K++E   A+
Sbjct:  540 FFYVELTEGTI-----LSHSVEENE------NFPAQFGREVLAGLLNMPERADWRNCALGKDEETKMAE 597
[Close]
BLAST of mRNA_H-elongata_contig178343.4702.1 vs. uniprot
Match: UPI0018F861BE (zinc finger CCCH domain-containing protein 64 n=1 Tax=Tripterygium wilfordii TaxID=458696 RepID=UPI0018F861BE)

HSP 1 Score: 52.8 bits (125), Expect = 2.990e-6
Identity = 28/68 (41.18%), Postives = 36/68 (52.94%), Query Frame = 1 
Query:   13 FYAELPGDVVGSRVRLLHRGGNTDPYGRQRNVPLQFGRDVAARLLSMPERAHWRDCALPKNKEILQAD 216
            FY ELPG  +     L H     + +      P QFGR+V A LL MP+RA WR+C L K +E   A+
Sbjct:  542 FYVELPGGTI-----LSHLVEENEKF------PAQFGREVLAGLLKMPDRADWRNCKLDKEEETKMAE 598
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig178343.4702.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LD91_ECTSI1.020e-3583.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CFA8_9STRA2.650e-1350.00CwfJ C-terminus 1-domain-containing protein-like p... [more]
A0A6P5FSW7_ANACO3.340e-741.18zinc finger CCCH domain-containing protein 59 n=4 ... [more]
A0A833RA64_9POAL8.550e-739.13Zinc finger CCCH domain-containing protein 59 isof... [more]
A0A0J8B6N2_BETVV1.170e-637.14Uncharacterized protein n=1 Tax=Beta vulgaris subs... [more]
A0A5J9TD57_9POAL2.990e-642.65Uncharacterized protein n=1 Tax=Eragrostis curvula... [more]
B9RK71_RICCO2.990e-642.03Nucleic acid binding protein, putative n=3 Tax=Ric... [more]
A0A2P2JC73_RHIMU2.990e-642.19Uncharacterized protein MANES_03G034200 n=2 Tax=Rh... [more]
A0A2K2A2U4_POPTR2.990e-642.03Uncharacterized protein n=19 Tax=Saliceae TaxID=23... [more]
UPI0018F861BE2.990e-641.18zinc finger CCCH domain-containing protein 64 n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig178343contigH-elongata_contig178343:3..1291 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.7
Seed ortholog evalue3.6e-29
Seed eggNOG ortholog2880.D8LD91
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.DNA binding
EggNOG OGsKOG2476@1,KOG2476@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCwf19-like protein, C-terminal domain-2
Ec32 orthologEc-25_002080.1
Exons2
Model size219
Cds size219
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930030.0953672-CDS-H-elongata_contig178343:2..711622930030.0953672-CDS-H-elongata_contig178343:2..71Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig178343 3..71 +
1691679253.2226226-CDS-H-elongata_contig178343:2..711691679253.2226226-CDS-H-elongata_contig178343:2..71Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig178343 3..71 +
1622930030.1123395-CDS-H-elongata_contig178343:1141..12911622930030.1123395-CDS-H-elongata_contig178343:1141..1291Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig178343 1142..1291 +
1691679253.2475264-CDS-H-elongata_contig178343:1141..12911691679253.2475264-CDS-H-elongata_contig178343:1141..1291Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig178343 1142..1291 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig178343.4702.1prot_H-elongata_contig178343.4702.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig178343 3..1291 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig178343.4702.1

>prot_H-elongata_contig178343.4702.1 ID=prot_H-elongata_contig178343.4702.1|Name=mRNA_H-elongata_contig178343.4702.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=73bp
EGQYFYAELPGDVVGSRVRLLHRGGNTDPYGRQRNVPLQFGRDVAARLLS
MPERAHWRDCALPKNKEILQADI
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mRNA from alignment at H-elongata_contig178343:3..1291+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig178343.4702.1 ID=mRNA_H-elongata_contig178343.4702.1|Name=mRNA_H-elongata_contig178343.4702.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1289bp|location=Sequence derived from alignment at H-elongata_contig178343:3..1291+ (Himanthalia elongata Himel1 dioecious)
GAAGGGCAGTATTTTTATGCGGAGCTTCCCGGAGACGTGGTCGGGAGCAG
GGTTCGGCTGCTGCACAGGGTTGCGGAGGTGAGGAAGAAGAGGCGTTAGT
GTGGTACGGGGTCCTGTGCTCTAGATCCCCCCCTCATCTCCCTCTTCCCG
GGAGTTATTGAAATTTGGTTGGCGTTGGCTGGGGGAGAGGGGATGATATA
TTGCAGGCGGGATTTGTGAAAACAAATTATATACTACTGTACATTGTAGT
AAGTTTGGATGGTATCATGGAATAATGGCATAATTATATGGTCGCCCCAG
TGGTTTCAGTTGGTAAAACTCGAAACCTTCTGATGATGTTTGGACGTGAG
TTCGAATCTTGGCGAATTAACACGAACTGGGATATTTTTCTCACATCATG
TCCAGCAAGTAGTGGAGAACGAATATTTCGTGGGTACTAGACAAAATTAA
CCTTTTACGGTCGACACGACGGAAAAGGACTATGGCGGCTGAACTCTTCT
CGCGATAGAAAAATTAAGGCAAGCACCGCAGAAGGGAGGTTAAAAATATC
ATGTGTGTGATCTGACGGCCAAAATAAATGGGATGACAACATAATGACAA
ATCTAATGGTATTATGAACAAAAAATAGGCATATATATATATATATATAT
CTACCCGTGGTTGGTGGTGTAATAGACATGTTTTTTATATGATCGTGTCA
TGTGTATTAGAGTGTGGCAGTAGTAGGCATTAGCTGAACCAGGCGATATG
TCTTGGTTTCGCATACATTAATCATTAGTAGGCATTAATAGGCATTGATA
GGCATCATTATAGTAGGCATTGATCGGCATCATTATAGTAGGTATTAATA
GGCATAATTAAAATAGGCGTTCATAAGCATTCATTTCATTCGTACCCTCA
ACGTCAAGTGTTCAATTGAATGACGTGGCCCCTTCGCTCTAGGGGGAGCG
GGGAAACGGGGGGAAGCGGAGGGAAGGGGCCAGGTCGGGCCGCGGACATC
GTCAGGGATAGCAAATCAACCAGAGCTGCATTTTTGTATCCCTTTGTCTC
CTCTTTATTTACGTCGGGCCGCCCGCCCGCCTGCCCGTGTCCCCTGTCCC
CTGACCCCTCTTCCTGAATCCGTTAACTTTTGGTGAAAGGGGGGAAACAC
CGACCCCTACGGGCGACAGCGCAATGTGCCGTTACAGTTCGGTCGCGACG
TGGCTGCGCGGCTGCTGAGCATGCCCGAGCGTGCCCACTGGAGAGACTGC
GCCCTACCGAAGAACAAGGAAATCCTGCAGGCGGACATT
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Coding sequence (CDS) from alignment at H-elongata_contig178343:3..1291+

>mRNA_H-elongata_contig178343.4702.1 ID=mRNA_H-elongata_contig178343.4702.1|Name=mRNA_H-elongata_contig178343.4702.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=438bp|location=Sequence derived from alignment at H-elongata_contig178343:3..1291+ (Himanthalia elongata Himel1 dioecious)
GAAGGGCAGTATTTTTATGCGGAGCTTCCCGGAGACGTGGTCGGGAGCAG
GGTTCGGCTGCTGCACAGGGAAGGGCAGTATTTTTATGCGGAGCTTCCCG
GAGACGTGGTCGGGAGCAGGGTTCGGCTGCTGCACAGGGGGGGAAACACC
GACCCCTACGGGCGACAGCGCAATGTGCCGTTACAGTTCGGTCGCGACGT
GGCTGCGCGGCTGCTGAGCATGCCCGAGCGTGCCCACTGGAGAGACTGCG
CCCTACCGAAGAACAAGGAAATCCTGCAGGCGGACATTGGGGGAAACACC
GACCCCTACGGGCGACAGCGCAATGTGCCGTTACAGTTCGGTCGCGACGT
GGCTGCGCGGCTGCTGAGCATGCCCGAGCGTGCCCACTGGAGAGACTGCG
CCCTACCGAAGAACAAGGAAATCCTGCAGGCGGACATT
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