mRNA_H-elongata_contig1780.4690.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1780.4690.1
Unique NamemRNA_H-elongata_contig1780.4690.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1780.4690.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1780contigH-elongata_contig1780:9559..12674 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size280
Cds size225
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1780.4690.1prot_H-elongata_contig1780.4690.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1780 10146..12674 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930028.8685827-UTR-H-elongata_contig1780:9558..96081622930028.8685827-UTR-H-elongata_contig1780:9558..9608Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1780 9559..9608 -
1691679252.7493608-UTR-H-elongata_contig1780:9558..96081691679252.7493608-UTR-H-elongata_contig1780:9558..9608Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1780 9559..9608 -
1622930028.8846006-UTR-H-elongata_contig1780:10140..101451622930028.8846006-UTR-H-elongata_contig1780:10140..10145Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1780 10141..10145 -
1691679252.7578168-UTR-H-elongata_contig1780:10140..101451691679252.7578168-UTR-H-elongata_contig1780:10140..10145Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1780 10141..10145 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930028.9009836-CDS-H-elongata_contig1780:10145..101631622930028.9009836-CDS-H-elongata_contig1780:10145..10163Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1780 10146..10163 -
1691679252.766268-CDS-H-elongata_contig1780:10145..101631691679252.766268-CDS-H-elongata_contig1780:10145..10163Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1780 10146..10163 -
1622930028.9201546-CDS-H-elongata_contig1780:12467..126741622930028.9201546-CDS-H-elongata_contig1780:12467..12674Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1780 12468..12674 -
1691679252.77506-CDS-H-elongata_contig1780:12467..126741691679252.77506-CDS-H-elongata_contig1780:12467..12674Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1780 12468..12674 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1780.4690.1

>prot_H-elongata_contig1780.4690.1 ID=prot_H-elongata_contig1780.4690.1|Name=mRNA_H-elongata_contig1780.4690.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=75bp
MGLSKSFMPQVDMVPAYAGIVSYFLSRRQTCRGSSVTSYDGCQRPLYQSV
IARGGLVRDRGWNCAEEMELCGRS*
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mRNA from alignment at H-elongata_contig1780:9559..12674-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1780.4690.1 ID=mRNA_H-elongata_contig1780.4690.1|Name=mRNA_H-elongata_contig1780.4690.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3116bp|location=Sequence derived from alignment at H-elongata_contig1780:9559..12674- (Himanthalia elongata Himel1 dioecious)
ATGGGCCTGTCGAAGAGCTTCATGCCCCAGGTAGATATGGTTCCTGCATA
CGCTGGGATCGTGAGCTACTTCCTCTCGAGAAGACAGACCTGCCGGGGCA
GCTCCGTCACCAGCTATGATGGGTGCCAACGCCCACTCTACCAAAGCGTC
ATAGCCCGCGGAGGCCTTGTGCGTGATAGAGGGTGGAACTGTGCGGAGGA
GATGGAGGTGTGAAAGACAGGAAACTGCAGAGAGGCACATAATCTGAAAG
CTCGCCTGAGCATCGTTCATTGGTACCAGCGATCGTACAAGCTCGGCTGG
TTCTCCGTTAACTGCATTATGCAAGAAATCCCGCTTAACCGGTTCCGCCC
CCACCGGTACTCCCCCAACTATTATCCCCGTCCAACCACAATGAGACCTG
TGCTATCCACCACTAAGTGTTGCTCTTCCATGAGATCTTCTCGCATAACT
CAATTCGCCAGAAGCTCTTGTGACTTTCTCCGGTTCAGCGAGATGCCTTC
TACCCCCAGTCATTCTCGTAGTCATTCGGTTACTGTTGTTATCGCTGCCA
TGTCGAGAGAGAGCTTCGGTGGCAAAATGACAGTGATTTCCTCGATGAAC
AAAATCGCTTTTGCTCCCGGTACGGATGGTTTAGACCTGAACTCCTTCAG
AATCTTGAGAACCCCTGCGCTATAGCAAAGAGGGTCCAGATTGAGCCCCA
CGCAGACTCAACCACTTTTACCCCTTCGCCATCTAGCGCAAATACTAGTT
TCGTTGGTTCTTGGACGTACAAGTTTGCCGCGTAGGGCACTCCTCAGGGG
ACAATTTTTGCTAGCGCTAGTAGAAACCTGTGACGGTACATGTTTTTGAA
GGCGTTGGCCCCGTTGGACGAGAGGATAGAGCAGCCCTCTTCGAAATTCT
GTGTGGATGTTAGGGCCATGATATCTACTCCGTCAGACACTGAAACACCA
TACTGGCCCCATGACTAGAACTAGTCTACAAGCTTCCTGTCGTATCTGCG
GCAGAAAATGACGCCAACTCTTTGGAGGACGTCACCGCACGCGATCGGCC
TCGCCTTTTGCCCCAACGTAGAGATGTTGACGCTCGTATGCGGTGTCCAG
AACATTTGAGTTCGAATACTACTGGAAAAGATAAGCGTCGCAAGCTCGGC
AAGCTCCTCAACAAGTTCGTCACACAGCGCGGCCTGCAGATGGCTGTAGC
GTAGTCCGGGTGGTCCTGCTGCACTCTGTGGGTTGATCTTCTTTATTATG
GTTTTCACCGTGGCTTCTCCAAAAGATTCTCAATTTCCGGAATATGACCG
TGTACATCAAATGGCTCGATTGCCACGTCCGGTTGCTACACCTGCTCACG
CTCTGCGCGTTGTTCAGCCTGGGCTCTGCATACGGCGAATGCCCCGGGGT
CTTCAGTAGGGTGCTTGCTGCGTAGGATTGTCAACGTCTTGTTGCCTCGA
GGTACTGCTGGGGGAGACGTTAGGGCGCTCGCGGCCTTCGTGATGCCCCC
TCGATAATGCGGTAGCTTACTTGCTTGCTGTCTACGAGCGTCAGGGATAT
CATCCCCTGGTTTCTACAGGCTTCTTTCCGCAAACACTACCAGCCAGTTG
AGGAGGCCAAACATATCTCCTCGTGCGTAGTCGTTGCAGCGACCCTGGCG
GATGCAGCATATATCTGATGATTATAAGAGAGCCGGGGTAATTTGGAGAA
GTTAAGTAGCTTTCTCAAGATTATTCCCAAGGGCAACGTTGTGGGTCCCA
CCTGCTGGGAACACATGTAGGGTATTGTAAGTGTGTTAATGGTTGGGCGG
TATGCACGCCTCTTGTATCTCTAGAAAAGGTGGGTCTCACACGGGAGAGC
TGGTGCTGTGCTGGGTGTTAGCGGTGGAGGCTCGGCATGGAACACATTCC
TGACGGGTATAAAAGACCGATGTATTATTAGTTATCACCACAGAGCCCAA
CAGGGCCAATACGACGCACAGAAGAATATAACGAACGAACGTATAGAACC
TGAAGAACTACAGAATAGACTGAAGGGGGGTGGGTCAAACATATGAACAA
TGATCTACCAATCTATAGTAGATCGATTACTGAAACTACCATAATCCTAT
TGGACAGAATATTCCAGTAATCTACAAGTCTATCCGCCATTTTGATTCTT
TATTTTATCATGTGTATGTATATGTGTGTCTGTATGTCTGTGTGTCTGTG
TGCTTAGCTATCTATTTTATAGCCATATTCCTGTTAGCGACTGCTTCTTC
GCGTTATGTTAATCCAGGAGGCAGGTTGTCCTTGCAACATTCCTCCTTCC
TCGTAGTCTACATGATCAACCGTCCACAATCGAATTGTTCTAACACTCCC
ACAACCGTCCGCCCTATCTGGACATCCGCGTTTGTCTCTCCTCTTTTTCT
TCGTTTGTTTTTTATTCATGTGGGATCTAAACTTCAACATCATTGTGTTA
TGGGTACTTTTGTGGAACCTGCGCGGTGACTGCGCAATGCCACCCTCGAT
TGATATAACAGTTGTGTGGCAGATCCTGACGCAGGTGCGCTGTTCTCCTT
GTGGCCCAAAGGAGTGCGTACATCATACATGCAGTAGTGTTCAACATTGC
AGTGATCTCACATTCATGCAGCTAGACACGCCCCCCTCATGTCGCTTCTT
AGTCAGTAAATTCGCGCACGCACCTGAATACGCATATGATAGCAGCATAC
GCCAAGCAATCGTCCTTGTGATGAGTTTTCCTTTATATTGAATAAAGCAT
TGGGGGCTTACACTTGCAACCCTTTTTTTGTGTAGCACATAGTGCTCCGC
ATACCTGGTGATTATCCAATGGCCTCGCGTATTTTTAAACGTCTGGCCTA
GGGTCACGCTCAATATTTACTTTTGGCTGACATCGAAGGCAAATCCAAAT
CATTCCCGATTCTGATTCGAAGCGACGCAATCGTCGTCGATGATGATCAC
CTAGCTTGATTTTCCCCTGCCTTGCTTACCCATGTTTTCGCTTCTCTATG
CCCTCGTTCTCTTCCCTATGATTATATCCTGATCCGAATGCCTGTCGTGC
TCAACTCGTACTTCAGTCCTCCGCTTTGGCACAAATTCCATACCCGTCCA
CCTACGAGCGGTTCTT
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Coding sequence (CDS) from alignment at H-elongata_contig1780:9559..12674-

>mRNA_H-elongata_contig1780.4690.1 ID=mRNA_H-elongata_contig1780.4690.1|Name=mRNA_H-elongata_contig1780.4690.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=450bp|location=Sequence derived from alignment at H-elongata_contig1780:9559..12674- (Himanthalia elongata Himel1 dioecious)
ATGGGCCTGTCGAAGAGCTTCATGCCCCAGGTAGATATGGTTCCTGCATA
CGCTGGGATCGTGAGCTACTTCCTCTCGAGAAGACAGACCTGCCGGGGCA
GCTCCGTCACCAGCTATGATGGGTGCCAACGCCCACTCTACCAAAGCGTC
ATAGCCCGCGGAGGCCTTGTGCGTGATAGAGGGTGGAACTGTGCGGAGGA
GATGGAGATGGGCCTGTCGAAGAGCTTCATGCCCCAGGTAGATATGGTTC
CTGCATACGCTGGGATCGTGAGCTACTTCCTCTCGAGAAGACAGACCTGC
CGGGGCAGCTCCGTCACCAGCTATGATGGGTGCCAACGCCCACTCTACCA
AAGCGTCATAGCCCGCGGAGGCCTTGTGCGTGATAGAGGGTGGAACTGTG
CGGAGGAGATGGAGTTGTGTGGCAGATCCTGATTGTGTGGCAGATCCTGA
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