mRNA_H-elongata_contig17776.4680.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17776.4680.1
Unique NamemRNA_H-elongata_contig17776.4680.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig17776.4680.1 vs. uniprot
Match: D8LM34_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM34_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 1.120e-37
Identity = 74/100 (74.00%), Postives = 85/100 (85.00%), Query Frame = 1 
Query:    1 FLMQYVKKDKLTELLAEKLCTRLVASETTRQGQLVSYCLGQLKVTEKAVSRLAELMPTYKDKLQDKDVYSNFVGLVNRAKQFASQEMVQAIDEWKAQLEK 300
            FLMQYVKKDKLTELLAEKLC RL ASET RQ + VSYCLGQLKVTEKAVSRLAEL+PTYK+KLQD +V++NF  +V R K FA+ EM +A+ EW+AQL K
Sbjct: 1238 FLMQYVKKDKLTELLAEKLCARLAASETDRQARAVSYCLGQLKVTEKAVSRLAELVPTYKEKLQDDEVFNNFKTVVLRTKSFATLEMKEAVAEWEAQLRK 1337
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BLAST of mRNA_H-elongata_contig17776.4680.1 vs. uniprot
Match: A0A7S4MY57_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MY57_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 7.860e-16
Identity = 40/98 (40.82%), Postives = 63/98 (64.29%), Query Frame = 1 
Query:    1 FLMQYVKKDKLTELLAEKLCTRLVASETTRQGQLVSYCLGQLKVTEKAVSRLAELMPTYKDKLQDKDVYSNFVGLVNRAKQFASQEMVQAIDEWKAQL 294
            FL+ ++KKD+ TE+L +KLC R     T  Q   ++YCL  LKV +K V  L +    YKD L D+DVY +F  +V++AK+F+  EM + ++E++ +L
Sbjct:  965 FLLSFIKKDRQTEMLVDKLCQRFPKCTTISQKADLAYCLSNLKVNDKCVKCLNDHFKLYKDALFDEDVYRSFSAIVSKAKKFSKPEMKEPVEEFETKL 1062
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BLAST of mRNA_H-elongata_contig17776.4680.1 vs. uniprot
Match: A0A507DVL0_9FUNG (Condensin complex subunit 1 n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507DVL0_9FUNG)

HSP 1 Score: 73.9 bits (180), Expect = 5.410e-13
Identity = 37/107 (34.58%), Postives = 70/107 (65.42%), Query Frame = 1 
Query:    1 FLMQYVKKDKLTELLAEKLCTRLVASETTRQGQLVSYCLGQLK-VTEKAVSRLAELMPTYKDKLQDKDVYSNFVGLVNRAKQFASQEMVQAIDEWKAQLEKVKNRML 318
            FL++++KKDK TE + EKLC R   ++T RQ + +S+CL  L   ++K+V +L E +P Y+DKL +  +Y +   ++ +AK+ A  E    I++++ +L++ +N+ +
Sbjct: 1126 FLLEFIKKDKQTENIVEKLCLRFRNADTERQWRDISFCLTLLSFASDKSVKKLIEHLPQYQDKLHEPVLYKHLEDILAKAKKVAKTETKTMIEDFEVKLKECRNKCV 1232
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BLAST of mRNA_H-elongata_contig17776.4680.1 vs. uniprot
Match: A0A0L0H9H9_SPIPD (Condensin complex subunit 1 n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0H9H9_SPIPD)

HSP 1 Score: 70.5 bits (171), Expect = 8.860e-12
Identity = 35/107 (32.71%), Postives = 68/107 (63.55%), Query Frame = 1 
Query:    1 FLMQYVKKDKLTELLAEKLCTRLVASETTRQGQLVSYCLGQLK-VTEKAVSRLAELMPTYKDKLQDKDVYSNFVGLVNRAKQFASQEMVQAIDEWKAQLEKVKNRML 318
            FL+ ++KKDK TE + EKLC R   ++  RQ + +S+CL  L   ++K+V +L E +P ++DKL +  +Y +F  ++ +AK+ A  E    I++++ +L+++  + +
Sbjct: 1136 FLLDFIKKDKQTENIVEKLCLRFRNADGPRQWRDISFCLSLLSFASDKSVKKLVEHLPHFQDKLHEPVLYKHFQDILGKAKKVAKPETKTLIEDFEVKLQELHEKCV 1242
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BLAST of mRNA_H-elongata_contig17776.4680.1 vs. uniprot
Match: A0A177W8G6_BATDL (Condensin complex subunit 1 n=1 Tax=Batrachochytrium dendrobatidis (strain JEL423) TaxID=403673 RepID=A0A177W8G6_BATDL)

HSP 1 Score: 70.1 bits (170), Expect = 1.210e-11
Identity = 33/103 (32.04%), Postives = 65/103 (63.11%), Query Frame = 1 
Query:    1 FLMQYVKKDKLTELLAEKLCTRLVASETTRQGQLVSYCLGQLKV-TEKAVSRLAELMPTYKDKLQDKDVYSNFVGLVNRAKQFASQ-EMVQAIDEWKAQLEKV 303
            FL +++K+D+ +E + +KLC R   + T RQ Q +++CL  +   TEK++ +L + +P Y+DKL  + VY  F  ++ + K+   + E+ Q +DE++  L+++
Sbjct: 1025 FLFEFIKQDRQSESIIDKLCARFCNANTERQWQDIAFCLSLISFSTEKSLKKLVDALPMYQDKLHPEKVYKYFTDIIKKVKKIPGKPELKQMVDEYEKTLQEL 1127
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BLAST of mRNA_H-elongata_contig17776.4680.1 vs. uniprot
Match: F4NUE3_BATDJ (Protoporphyrinogen oxidase n=1 Tax=Batrachochytrium dendrobatidis (strain JAM81 / FGSC 10211) TaxID=684364 RepID=F4NUE3_BATDJ)

HSP 1 Score: 70.1 bits (170), Expect = 1.230e-11
Identity = 33/103 (32.04%), Postives = 65/103 (63.11%), Query Frame = 1 
Query:    1 FLMQYVKKDKLTELLAEKLCTRLVASETTRQGQLVSYCLGQLKV-TEKAVSRLAELMPTYKDKLQDKDVYSNFVGLVNRAKQFASQ-EMVQAIDEWKAQLEKV 303
            FL +++K+D+ +E + +KLC R   + T RQ Q +++CL  +   TEK++ +L + +P Y+DKL  + VY  F  ++ + K+   + E+ Q +DE++  L+++
Sbjct: 1672 FLFEFIKQDRQSESIIDKLCARFCNANTERQWQDIAFCLSLISFSTEKSLKKLVDALPMYQDKLHPEKVYKYFTDIIKKVKKIPGKPELKQMVDEYEKTLQEL 1774
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BLAST of mRNA_H-elongata_contig17776.4680.1 vs. uniprot
Match: A0A1X7V9Q3_AMPQE (Condensin complex subunit 1 n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7V9Q3_AMPQE)

HSP 1 Score: 68.6 bits (166), Expect = 4.190e-11
Identity = 33/104 (31.73%), Postives = 65/104 (62.50%), Query Frame = 1 
Query:    1 FLMQYVKKDKLTELLAEKLCTRLVASETTRQGQLVSYCLGQLKVTEKAVSRLAELMPTYKDKLQDKDVYSNFVGLVNRAKQFASQEMVQAIDEWKAQLEKVKNR 312
            +L+ +VKK++ +E L EKLC R  A+ T +Q + +++CL QL V E+ + +L E +P Y+  L D +VY++ +  V++ K+ A  +     +E++ +L  + ++
Sbjct: 1084 YLLSFVKKERQSEGLVEKLCHRFRATRTEQQSRDLAFCLSQLNVNERGLRKLHENLPCYQGLLSDTEVYNSLLTAVSKGKKLAKGDKKPMYEEFETKLADIHHK 1187
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BLAST of mRNA_H-elongata_contig17776.4680.1 vs. uniprot
Match: A0A1S8VW18_9FUNG (Condensin complex subunit 1 n=1 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8VW18_9FUNG)

HSP 1 Score: 67.0 bits (162), Expect = 1.460e-10
Identity = 35/100 (35.00%), Postives = 60/100 (60.00%), Query Frame = 1 
Query:    1 FLMQYVKKDKLTELLAEKLCTRLVASETTRQGQLVSYCLGQLK-VTEKAVSRLAELMPTYKDKLQDKDVYSNFVGLVNRAKQFASQ-EMVQAIDEWKAQL 294
            FL +++KKDK +E + +KL  R   ++T RQ Q ++YC+  L   TEK+  +L + +P Y+DKL  + VY  F  ++ + K+   + E+ Q  DE++  L
Sbjct: 1182 FLFEFIKKDKQSESIIDKLTVRFRNADTERQWQHIAYCMSLLSFATEKSFKKLVDALPMYQDKLHPEKVYKYFTDIIKKVKKVPGKPELKQQADEFEKTL 1281
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BLAST of mRNA_H-elongata_contig17776.4680.1 vs. uniprot
Match: A0A507BT70_9FUNG (Condensin complex subunit 1 n=1 Tax=Synchytrium microbalum TaxID=1806994 RepID=A0A507BT70_9FUNG)

HSP 1 Score: 66.6 bits (161), Expect = 1.990e-10
Identity = 38/109 (34.86%), Postives = 68/109 (62.39%), Query Frame = 1 
Query:    1 FLMQYVKKDKLTELLAEKLCTRLVASETTRQGQLVSYCLGQLKVT-EKAVSRLAELMPTYKDKLQDKDVYSNFVGLVNRAKQFASQEMVQAIDEWKAQLEKVKNRMLGQ 324
            F+  ++KK+K TE L EKL  R   ++T RQ + +++CLG L  + EK++ +L E M  Y+DKL +  V+ +F  +V++AK+    E   +I+E++ +L ++  + L Q
Sbjct: 1136 FMFDFIKKEKQTESLVEKLVLRFKNADTDRQCRDIAFCLGLLPFSSEKSIKKLVEGMGHYQDKLYEPTVWKHFQEIVSKAKKQPKTENKASIEEFERKLIELHEKCLEQ 1244
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BLAST of mRNA_H-elongata_contig17776.4680.1 vs. uniprot
Match: A0A507CTP5_9FUNG (Condensin complex subunit 1 n=1 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507CTP5_9FUNG)

HSP 1 Score: 64.3 bits (155), Expect = 1.280e-9
Identity = 34/109 (31.19%), Postives = 67/109 (61.47%), Query Frame = 1 
Query:    1 FLMQYVKKDKLTELLAEKLCTRLVASETTRQGQLVSYCLGQLKVT-EKAVSRLAELMPTYKDKLQDKDVYSNFVGLVNRAKQFASQEMVQAIDEWKAQLEKVKNRMLGQ 324
            FL  ++KKDK TE + EKL  R   ++T RQ + +++CL  L  + EK++ +L + +P Y+DKL +  V+ +F  ++++AK+    +    ++E++ +L  ++ + L Q
Sbjct: 1159 FLFDFIKKDKQTENIVEKLVLRFKNADTDRQCRDIAFCLASLPFSSEKSIKKLVDGIPHYQDKLYEPTVWKHFQDILSKAKKAPRTDGKTILEEFERRLADLREKALEQ 1267
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17776.4680.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D8LM34_ECTSI1.120e-3774.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S4MY57_9STRA7.860e-1640.82Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A507DVL0_9FUNG5.410e-1334.58Condensin complex subunit 1 n=1 Tax=Powellomyces h... [more]
A0A0L0H9H9_SPIPD8.860e-1232.71Condensin complex subunit 1 n=2 Tax=Spizellomyces ... [more]
A0A177W8G6_BATDL1.210e-1132.04Condensin complex subunit 1 n=1 Tax=Batrachochytri... [more]
F4NUE3_BATDJ1.230e-1132.04Protoporphyrinogen oxidase n=1 Tax=Batrachochytriu... [more]
A0A1X7V9Q3_AMPQE4.190e-1131.73Condensin complex subunit 1 n=1 Tax=Amphimedon que... [more]
A0A1S8VW18_9FUNG1.460e-1035.00Condensin complex subunit 1 n=1 Tax=Batrachochytri... [more]
A0A507BT70_9FUNG1.990e-1034.86Condensin complex subunit 1 n=1 Tax=Synchytrium mi... [more]
A0A507CTP5_9FUNG1.280e-931.19Condensin complex subunit 1 n=1 Tax=Synchytrium en... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17776contigH-elongata_contig17776:265..1212 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score142.1
Seed ortholog evalue1.6e-31
Seed eggNOG ortholog2880.D8LM34
Preferred nameNCAPD2
KEGG koko:K06677
KEGG Pathwayko04111,map04111
GOsGO:0000003,GO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000775,GO:0000776,GO:0000777,GO:0000778,GO:0000779,GO:0000780,GO:0000785,GO:0000793,GO:0000794,GO:0000796,GO:0000797,GO:0000799,GO:0000819,GO:0003674,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006323,GO:0006325,GO:0006342,GO:0006355,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007076,GO:0007127,GO:0007129,GO:0007130,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010032,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010629,GO:0010948,GO:0016043,GO:0016458,GO:0019219,GO:0019222,GO:0022402,GO:0022414,GO:0022607,GO:0030261,GO:0030466,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0035327,GO:0040029,GO:0042393,GO:0043007,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043570,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0045120,GO:0045132,GO:0045143,GO:0045786,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048285,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0051304,GO:0051307,GO:0051321,GO:0051445,GO:0051447,GO:0051726,GO:0060255,GO:0061982,GO:0065007,GO:0070013,GO:0070058,GO:0070192,GO:0070193,GO:0071103,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0098687,GO:0098813,GO:0140013,GO:0140014,GO:1901360,GO:1902679,GO:1903046,GO:1903047,GO:1903341,GO:1903342,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2000241,GO:2000242,GO:2001141
EggNOG free text desc.mitotic chromosome condensation
EggNOG OGsCOG5098@1,KOG0414@2759
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size345
Cds size339
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17776.4680.1prot_H-elongata_contig17776.4680.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17776 271..1212 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930027.9917026-UTR-H-elongata_contig17776:264..2701622930027.9917026-UTR-H-elongata_contig17776:264..270Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17776 265..270 +
1691679252.356172-UTR-H-elongata_contig17776:264..2701691679252.356172-UTR-H-elongata_contig17776:264..270Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17776 265..270 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930028.0078855-CDS-H-elongata_contig17776:270..3931622930028.0078855-CDS-H-elongata_contig17776:270..393Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17776 271..393 +
1691679252.3714411-CDS-H-elongata_contig17776:270..3931691679252.3714411-CDS-H-elongata_contig17776:270..393Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17776 271..393 +
1622930028.0222092-CDS-H-elongata_contig17776:996..12121622930028.0222092-CDS-H-elongata_contig17776:996..1212Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17776 997..1212 +
1691679252.3794992-CDS-H-elongata_contig17776:996..12121691679252.3794992-CDS-H-elongata_contig17776:996..1212Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17776 997..1212 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17776.4680.1

>prot_H-elongata_contig17776.4680.1 ID=prot_H-elongata_contig17776.4680.1|Name=mRNA_H-elongata_contig17776.4680.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=113bp
MQYVKKDKLTELLAEKLCTRLVASETTRQGQLVSYCLGQLKVTEKAVSRL
AELMPTYKDKLQDKDVYSNFVGLVNRAKQFASQEMVQAIDEWKAQLEKVK
NRMLGQSTRPGK*
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mRNA from alignment at H-elongata_contig17776:265..1212+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17776.4680.1 ID=mRNA_H-elongata_contig17776.4680.1|Name=mRNA_H-elongata_contig17776.4680.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=948bp|location=Sequence derived from alignment at H-elongata_contig17776:265..1212+ (Himanthalia elongata Himel1 dioecious)
TTCTTGATGCAGTACGTCAAGAAGGACAAGCTCACTGAGCTCCTTGCCGA
GAAGCTGTGCACCCGCTTGGTCGCCAGCGAGACTACTCGTCAGGGCCAGC
TGGTTTCGTACTGCCTGGGGCAGCTCAAGGTGCGCGCGGTTGGGTCCGGC
AGCACTATGGTAGTGGTAACGGTTACGGTTACGCTGGTTTTTGTTGTTGT
CATTGTCTCGGAGTCTCGATTCTGTAACCCAGCATTGTCAACACTTTGGG
GTCGTCTTGATCTCTCTCCTCGGAAGACGCCGCCTTTCAAGAAACTACGC
GAATTCAAAAGACATACTGTAAAAAAATAACGAAACCCAACAAAAAAGAA
AGACATAGCCGCCATGAACAACGAGGCGCCTCCGAGCGTGGTAAAGCCAC
TCTTCGATCCATGGACTTAATATTTCTGCTAAATGCGGAGAAGGAGTGTC
AAACCAGAGCATAGAGAATATACCTGGTAGGCGGTAGAGAGGGGGGGGGC
GGGGGGGTTTATGAAATTGTTTAAAATCTTAGTATCCCCCGGGTAAAAAG
CGAGGGGGGGGGGGGCNNNNNNNNNNTTATAATTATTTTTTTATCCTGGT
ATGAAAGGGGTGGGGGGGTGGGGGTCTAGTACATTCAACGCATCTATCTC
CCTATCCCATTGATTAATTTATTTGAGATATTTCGTAGCATATACTTAAA
TGCGTAGAGTATGTATTAATATACATTCACAGGTGACCGAGAAGGCTGTT
AGCCGTCTGGCCGAGCTGATGCCCACCTACAAGGACAAGCTACAGGACAA
GGACGTATACTCGAACTTCGTGGGGCTGGTGAATCGAGCGAAGCAGTTCG
CCTCCCAGGAGATGGTCCAGGCGATCGATGAATGGAAAGCACAGCTCGAG
AAGGTGAAGAACCGAATGCTCGGACAATCGACGCGACCGGGAAAGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig17776:265..1212+

>mRNA_H-elongata_contig17776.4680.1 ID=mRNA_H-elongata_contig17776.4680.1|Name=mRNA_H-elongata_contig17776.4680.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=678bp|location=Sequence derived from alignment at H-elongata_contig17776:265..1212+ (Himanthalia elongata Himel1 dioecious)
ATGCAGTACGTCAAGAAGGACAAGCTCACTGAGCTCCTTGCCGAGAAGCT
GTGCACCCGCTTGGTCGCCAGCGAGACTACTCGTCAGGGCCAGCTGGTTT
CGTACTGCCTGGGGCAGCTCAAGATGCAGTACGTCAAGAAGGACAAGCTC
ACTGAGCTCCTTGCCGAGAAGCTGTGCACCCGCTTGGTCGCCAGCGAGAC
TACTCGTCAGGGCCAGCTGGTTTCGTACTGCCTGGGGCAGCTCAAGGTGA
CCGAGAAGGCTGTTAGCCGTCTGGCCGAGCTGATGCCCACCTACAAGGAC
AAGCTACAGGACAAGGACGTATACTCGAACTTCGTGGGGCTGGTGAATCG
AGCGAAGCAGTTCGCCTCCCAGGAGATGGTCCAGGCGATCGATGAATGGA
AAGCACAGCTCGAGAAGGTGAAGAACCGAATGCTCGGACAATCGACGCGA
CCGGGAAAGTAAGTGACCGAGAAGGCTGTTAGCCGTCTGGCCGAGCTGAT
GCCCACCTACAAGGACAAGCTACAGGACAAGGACGTATACTCGAACTTCG
TGGGGCTGGTGAATCGAGCGAAGCAGTTCGCCTCCCAGGAGATGGTCCAG
GCGATCGATGAATGGAAAGCACAGCTCGAGAAGGTGAAGAACCGAATGCT
CGGACAATCGACGCGACCGGGAAAGTAA
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