mRNA_H-elongata_contig177442.4665.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig177442.4665.1
Unique NamemRNA_H-elongata_contig177442.4665.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig177442.4665.1 vs. uniprot
Match: D7FY81_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY81_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 9.980e-14
Identity = 38/57 (66.67%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:    1 DLRRSIIPWGFVSQQKILASVKPHRA------EGRVEKRAERLNLDTWEFLRVSERA 153
            DL  +IIPWGFVSQQK+  SV+P RA      +GRVEKRAE LNLDTWEFLR +E A
Sbjct:   33 DLSSTIIPWGFVSQQKVSESVRPDRAGDGPGDDGRVEKRAEHLNLDTWEFLRGAELA 89
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig177442.4665.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FY81_ECTSI9.980e-1466.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig177442contigH-elongata_contig177442:835..987 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.8
Seed ortholog evalue5.3e-11
Seed eggNOG ortholog2880.D7FY81
EggNOG OGs2C319@1,2SY82@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-24_003470.1
Exons1
Model size153
Cds size153
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930026.4957402-CDS-H-elongata_contig177442:834..9871622930026.4957402-CDS-H-elongata_contig177442:834..987Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig177442 835..987 -
1691679251.7761126-CDS-H-elongata_contig177442:834..9871691679251.7761126-CDS-H-elongata_contig177442:834..987Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig177442 835..987 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig177442.4665.1prot_H-elongata_contig177442.4665.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig177442 835..987 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig177442.4665.1

>prot_H-elongata_contig177442.4665.1 ID=prot_H-elongata_contig177442.4665.1|Name=mRNA_H-elongata_contig177442.4665.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=51bp
DLRRSIIPWGFVSQQKILASVKPHRAEGRVEKRAERLNLDTWEFLRVSER
A
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mRNA from alignment at H-elongata_contig177442:835..987-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig177442.4665.1 ID=mRNA_H-elongata_contig177442.4665.1|Name=mRNA_H-elongata_contig177442.4665.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=153bp|location=Sequence derived from alignment at H-elongata_contig177442:835..987- (Himanthalia elongata Himel1 dioecious)
GATCTACGAAGATCCATAATCCCGTGGGGCTTCGTCTCCCAGCAGAAGAT
CCTCGCCAGTGTGAAGCCTCACCGCGCAGAGGGACGGGTGGAGAAGCGTG
CCGAGCGCCTTAACCTCGACACTTGGGAATTTTTGCGAGTGAGTGAGCGA
GCT
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Coding sequence (CDS) from alignment at H-elongata_contig177442:835..987-

>mRNA_H-elongata_contig177442.4665.1 ID=mRNA_H-elongata_contig177442.4665.1|Name=mRNA_H-elongata_contig177442.4665.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=306bp|location=Sequence derived from alignment at H-elongata_contig177442:835..987- (Himanthalia elongata Himel1 dioecious)
GATCTACGAAGATCCATAATCCCGTGGGGCTTCGTCTCCCAGCAGAAGAT
CCTCGCCAGTGTGAAGCCTCACCGCGCAGAGGGACGGGTGGAGAAGCGTG
CCGAGCGCCTTAACCTCGACACTTGGGAATTTTTGCGAGTGAGTGAGCGA
GCTGATCTACGAAGATCCATAATCCCGTGGGGCTTCGTCTCCCAGCAGAA
GATCCTCGCCAGTGTGAAGCCTCACCGCGCAGAGGGACGGGTGGAGAAGC
GTGCCGAGCGCCTTAACCTCGACACTTGGGAATTTTTGCGAGTGAGTGAG
CGAGCT
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