mRNA_H-elongata_contig17736.4662.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig17736.4662.1 vs. uniprot
Match: D7G7A9_ECTSI (Cation efflux protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7A9_ECTSI) HSP 1 Score: 368 bits (945), Expect = 9.670e-122 Identity = 198/260 (76.15%), Postives = 220/260 (84.62%), Query Frame = 1
Query: 1 AIITDAGHQLSNLLSDAVTLWAVRLSRLPPDDDHPYGRGRFEAVGAFIVTVMLMRAEYGIGNHVLDTLGEVVQGTERGSTLPRNTAVVAVVSIVAKEALFRATIAVGRRRNSQVLIANAWHHQTDAVSSVVALLAIVGSMCGASMLDPIAGLMVAGMVSLTGVQARLPRVSTDAMAQLTDATEYKVQHRVAEMATKVPGVLSFDRVRARRMGPQTLVDLTIQTDGMTSASAAQQTRMRMKWEILERIPIVADVMVNIALE 780
A+I DAGH LS+LLSDAVTLWAVRLSRLPPD+DHPYG GRFEAVGAFI+ +MLM A YGIGNH +TL EV+ E + R TAV A VSI+AKEALFRAT A+G+RRNSQVLIANAWHH+TDAVSSVVALLAI GSM GA MLDPIAGLMVAGMV+LTGVQ VSTDAMAQLTDA +Y V+ +VAE+AT+VPGVLSFDRVRARRMGPQTLVDLTIQTD M SASAAQQ R++WEIL +P VADVMVNIA+E
Sbjct: 247 AMIADAGHSLSDLLSDAVTLWAVRLSRLPPDEDHPYGHGRFEAVGAFIIALMLMGAGYGIGNHSFETLREVISRGEHAAIPTRLTAVAASVSIIAKEALFRATNAIGKRRNSQVLIANAWHHRTDAVSSVVALLAIAGSMSGAPMLDPIAGLMVAGMVALTGVQ-----VSTDAMAQLTDAADYDVRRKVAEIATQVPGVLSFDRVRARRMGPQTLVDLTIQTDDMISASAAQQIGQRVRWEILGELPFVADVMVNIAVE 501
BLAST of mRNA_H-elongata_contig17736.4662.1 vs. uniprot
Match: A0A7S4DFL3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DFL3_HETAK) HSP 1 Score: 248 bits (634), Expect = 4.680e-76 Identity = 137/274 (50.00%), Postives = 182/274 (66.42%), Query Frame = 1
Query: 1 AIITDAGHQLSNLLSDAVTLWAVRLSRLPPDDDHPYGRGRFEAVGAFIVTVMLMRAEYGIGNHVLDTL---------------GEVVQGTERGSTLPRNTAVVA-VVSIVAKEALFRATIAVGRRRNSQVLIANAWHHQTDAVSSVVALLAIVGSMCGASMLDPIAGLMVAGMVSLTGVQARLPRVSTDAMAQLTDATEYKVQHRVAEMATKVPGVLSFDRVRARRMGPQTLVDLTIQTDGMTSASAAQQTRMRMKWEILERIPIVADVMVNIA 774
A++ DAGH LS+L+SD VTL++VRL+RLPPD+DHPYG GRFEAVGAFI+ +ML+ A YG+GNH ++ G + G P A+VA V+SIV+KE L+R T VG R NSQVLIANAWHH++DA+SSV+A + I G+M G +LD +AGLMVAGM+SLTG+Q + +++ QLTD E + KV GVL FD +RARRMG Q LVD+ IQ D SA+AA Q R +W +L+ +P V+DV+V ++
Sbjct: 144 AMVADAGHSLSDLISDGVTLYSVRLARLPPDEDHPYGHGRFEAVGAFIIAMMLIAASYGLGNHSYESFLKAIGYMKIPALGIGGNLDGGVPTSELQPTKIALVAAVISIVSKELLYRVTAKVGERLNSQVLIANAWHHRSDALSSVIAFVGIGGAMMGVPVLDSLAGLMVAGMLSLTGLQ-----LGWESVKQLTDTAENDCIDEIGAAVGKVEGVLGFDNLRARRMGSQMLVDVRIQCDPYISATAAHQIAERTRWHVLKIVPQVSDVLVTVS 412
BLAST of mRNA_H-elongata_contig17736.4662.1 vs. uniprot
Match: A0A7S2RL19_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RL19_9STRA) HSP 1 Score: 246 bits (628), Expect = 6.530e-76 Identity = 136/264 (51.52%), Postives = 178/264 (67.42%), Query Frame = 1
Query: 1 AIITDAGHQLSNLLSDAVTLWAVRLSRLPPDDDHPYGRGRFEAVGAFIVTVMLMRAEYGIGNHVLDTLGEVVQGTERGSTLPRNTAVV-----AVVSIVAKEALFRATIAVGRRRNSQVLIANAWHHQTDAVSSVVALLAIVGSMCGASMLDPIAGLMVAGMVSLTGVQARLPRVSTDAMAQLTDATEYKVQHRVAEMATKVPGVLSFDR--VRARRMGPQTLVDLTIQTDGMTSASAAQQTRMRMKWEILERIPIVADVMVNI 771
A+I DAGH LS+LLSD VTLWAVRLSRLPPD DHPYG GRFEA+GA + +L +G G H +L E + + G L +T + AVVSI++KE L+RAT VG+R NSQVLIANAWHH++DA SSVVAL+ IVG++ G +LDP+AGL VAGMV++TG+Q V D++ QLTD + + R +E+A GV+S D+ VRARRMG LVDL +Q AS A Q ++W ILE +P V++V+V++
Sbjct: 35 AMIADAGHSLSDLLSDGVTLWAVRLSRLPPDSDHPYGHGRFEALGALAIAALLASTAFGFGGHAYHSLTEFSRASAAGMDLATSTPTLLAVAAAVVSILSKEVLYRATAVVGQRLNSQVLIANAWHHRSDAFSSVVALVGIVGALLGQPILDPLAGLCVAGMVAITGLQ-----VGWDSLTQLTDTVDDEAVKRASEIAMNCDGVVSVDQKNVRARRMGSDILVDLRVQISPHVPASGANQIAEAVRWRILESMPAVSEVLVHV 293
BLAST of mRNA_H-elongata_contig17736.4662.1 vs. uniprot
Match: A0A7S2RMB7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RMB7_9STRA) HSP 1 Score: 246 bits (628), Expect = 3.230e-74 Identity = 136/264 (51.52%), Postives = 178/264 (67.42%), Query Frame = 1
Query: 1 AIITDAGHQLSNLLSDAVTLWAVRLSRLPPDDDHPYGRGRFEAVGAFIVTVMLMRAEYGIGNHVLDTLGEVVQGTERGSTLPRNTAVV-----AVVSIVAKEALFRATIAVGRRRNSQVLIANAWHHQTDAVSSVVALLAIVGSMCGASMLDPIAGLMVAGMVSLTGVQARLPRVSTDAMAQLTDATEYKVQHRVAEMATKVPGVLSFDR--VRARRMGPQTLVDLTIQTDGMTSASAAQQTRMRMKWEILERIPIVADVMVNI 771
A+I DAGH LS+LLSD VTLWAVRLSRLPPD DHPYG GRFEA+GA + +L +G G H +L E + + G L +T + AVVSI++KE L+RAT VG+R NSQVLIANAWHH++DA SSVVAL+ IVG++ G +LDP+AGL VAGMV++TG+Q V D++ QLTD + + R +E+A GV+S D+ VRARRMG LVDL +Q AS A Q ++W ILE +P V++V+V++
Sbjct: 196 AMIADAGHSLSDLLSDGVTLWAVRLSRLPPDSDHPYGHGRFEALGALAIAALLASTAFGFGGHAYHSLTEFSRASAAGMDLATSTPTLLAVAAAVVSILSKEVLYRATAVVGQRLNSQVLIANAWHHRSDAFSSVVALVGIVGALLGQPILDPLAGLCVAGMVAITGLQ-----VGWDSLTQLTDTVDDEAVKRASEIAMNCDGVVSVDQKNVRARRMGSDILVDLRVQISPHVPASGANQIAEAVRWRILESMPAVSEVLVHV 454
BLAST of mRNA_H-elongata_contig17736.4662.1 vs. uniprot
Match: A0A024TH39_9STRA (ZT_dimer domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TH39_9STRA) HSP 1 Score: 225 bits (573), Expect = 2.960e-67 Identity = 135/273 (49.45%), Postives = 178/273 (65.20%), Query Frame = 1
Query: 1 AIITDAGHQLSNLLSDAVTLWAVRLSRLPPDDDHPYGRGRFEAVGAFIVTVMLMRAEYGIG--------NHVLDTLGEVVQGTERG--STLPRNT-----AVVAVVSIVAKEALFRATIAVGRRRNSQVLIANAWHHQTDAVSSVVALLAIVGSMCGASMLDPIAGLMVAGMVSLTGVQARLPRVSTDAMAQLTD-ATEYKVQHRVAEMATKVPGVLSFDRVRARRMGPQTLVDLTIQTDGMTSASAAQQTRMRMKWEILERIPIVADVMVNI 771
A++ DA H LS+LLSD VTLWAVR+SRLPPDD+HPYG G+FEAVG+ V +L A G+G +LD V + +TL R T A AV SI AKEAL+ AT+ VG + NS+VLIANAWHH+TDA+SSVVAL I+GSM + DPIAG +V+GM++ TGV + D++ +LTD + E +V + ++ V V+S VRARRMGP TLVDL + G TS SAAQQ R+K E+L+R+P V++V+V+I
Sbjct: 84 ALVADAVHSLSDLLSDVVTLWAVRISRLPPDDEHPYGYGKFEAVGSLTVGAILTAAGVGMGYDALHLLQTGLLDAAVTVPSSLDFSFLTTLDRTTQWSIAAGAAVASIGAKEALYHATVRVGNQTNSKVLIANAWHHRTDAISSVVALGGILGSMANVPLFDPIAGAIVSGMIAKTGVD-----ICLDSVRELTDKSVENEVLDLLRHSSSSVEDVVSVSNVRARRMGPYTLVDLRVNVHGRTSVSAAQQVAARVKAEVLKRVPDVSEVLVHI 351
BLAST of mRNA_H-elongata_contig17736.4662.1 vs. uniprot
Match: A0A7S2V756_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V756_9STRA) HSP 1 Score: 219 bits (559), Expect = 1.260e-65 Identity = 132/301 (43.85%), Postives = 182/301 (60.47%), Query Frame = 1
Query: 1 AIITDAGHQLSNLLSDAVTLWAVRLSRLPPDDDHPYGRGRFEAVGAFIVTVMLMRAEYGIGNH------------------------VLDTLGEV------VQGT-------------ERGSTLPRNTAVVA-VVSIVAKEALFRATIAVGRRRNSQVLIANAWHHQTDAVSSVVALLAIVGSMCGASMLDPIAGLMVAGMVSLTGVQARLPRVSTDAMAQLTDATEYKVQHRVAEMATKVPGVLSFDRVRARRMGPQTLVDLTIQTDGMTSASAAQQTRMRMKWEILERIPIVADVMVNI 771
A+I DAGH LS+L+SD VTLWAVR++RLP D DHPYG GRFEAVGAF+++VMLM A Y +GNH +L +G + V G+ E + +P A+VA +VSIV+KE L+R T VG++ NSQVLIANAWHH++DA+SS VA+ IVG+ G +LDP+AGLMV+ M++LTG+Q D++ LTD + + ++ + +V GV ++RAR MG TLVD+ I T SASAA Q R +W +L +P+V+DV+V +
Sbjct: 38 AMIADAGHSLSDLVSDGVTLWAVRVARLPADADHPYGHGRFEAVGAFVISVMLMSAGYSLGNHAYESFLRALPYSGIPTSLAGWKVGLLSMMGHMGAASASVTGSAXXXXXXXXXXXVEGFAGMPGKIALVAALVSIVSKELLYRVTARVGKKLNSQVLIANAWHHRSDALSSFVAVGGIVGATMGLPVLDPLAGLMVSAMLTLTGLQC-----GWDSVKALTDTADTAMVSKLGALLDQVEGVQGHSQLRARSMGSDTLVDVKIHTHPRISASAAHQVAERARWHLLRNVPMVSDVLVTL 333
BLAST of mRNA_H-elongata_contig17736.4662.1 vs. uniprot
Match: W4GR85_9STRA (ZT_dimer domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GR85_9STRA) HSP 1 Score: 220 bits (561), Expect = 2.560e-65 Identity = 134/277 (48.38%), Postives = 178/277 (64.26%), Query Frame = 1
Query: 1 AIITDAGHQLSNLLSDAVTLWAVRLSRLPPDDDHPYGRGRFEAVGAFIVTVMLMRAEYGIGN---HVLDT-LGEVVQGTERG----------STLPRNT-----AVVAVVSIVAKEALFRATIAVGRRRNSQVLIANAWHHQTDAVSSVVALLAIVGSMCGASMLDPIAGLMVAGMVSLTGVQARLPRVSTDAMAQLTD-ATEYKVQHRVAEMATKVPGVLSFDRVRARRMGPQTLVDLTIQTDGMTSASAAQQTRMRMKWEILERIPIVADVMVNI 771
A++ DA H LS+LLSD VTLWAVR+SRLPPDD+HPYG G+FEAVG+ V +L A G+G H+L T + T ++L R T A A+VSI AKEAL+ AT+ +G + NS+VLIANAWHH+TDA+SSVVAL IVGSM + DPIAG +V+ M++ TGV + D++ +LTD + E +V + ++ V V+S VRARRMGP TLVDL + G TS SAAQQ R+K E+L R+P V++V+V+I
Sbjct: 89 ALVADAAHSLSDLLSDIVTLWAVRISRLPPDDEHPYGYGKFEAVGSLTVGAILTAAGVGMGYDAFHILQTGFFDAATATTVAVPSFLDLSFLTSLDRTTQWGIAAGAAIVSIGAKEALYHATVRIGNQTNSKVLIANAWHHRTDAISSVVALGGIVGSMANIPLFDPIAGAVVSCMIAKTGVD-----ICLDSVRELTDKSVEDEVLDLLRHSSSSVEDVVSVSNVRARRMGPYTLVDLRVNVHGRTSVSAAQQLAARVKAEVLRRVPDVSEVLVHI 360
BLAST of mRNA_H-elongata_contig17736.4662.1 vs. uniprot
Match: A0A3D5HED6_9DELT (Cation transporter n=5 Tax=root TaxID=1 RepID=A0A3D5HED6_9DELT) HSP 1 Score: 215 bits (547), Expect = 1.780e-64 Identity = 118/262 (45.04%), Postives = 172/262 (65.65%), Query Frame = 1
Query: 1 AIITDAGHQLSNLLSDAVTLWAVRLSRLPPDDDHPYGRGRFEAVGAFIVTVMLMRAEYGIGNHVLDTLGEVVQGTERGSTLPRNTAV-VAVVSIVAKEALFRATIAVGRRRNSQVLIANAWHHQTDAVSSVVALLAIVGSMCGASMLDPIAGLMVAGMVSLTGVQARLPRVSTDAMAQLTDAT-EYKVQHRVAEMATKVPGVLSFDRVRARRMGPQTLVDLTIQTDGMTSASAAQQTRMRMKWEILERIPIVADVMVNIALE 780
A+I DAGH +S+LLSD +TLWAVR+S +P D +HPYG G+FE VG FI+ ++L+ G+ HV + + V +P A+ +A ++I+ KEALF T VGRR S+VL+ANAWHH++DA+SSV ALL I G+ G ++DPIAG++VAG++ TG+ + +++ +LTD T E V + ++ + + GV + +RARRMGP LVDL IQ D M S SAA Q R++ EILE++P V +V+V++ E
Sbjct: 40 ALIADAGHSVSDLLSDGITLWAVRMSGIPKDKNHPYGHGKFETVGTFIIALLLLFTGIGVAGHVFNRMDAPV--------VPGTIALWMAGIAIIVKEALFHVTRMVGRRTGSRVLMANAWHHRSDAISSVAALLGIAGAQLGIPLMDPIAGMLVAGLIIKTGID-----IGYESIRELTDETVEEDVISELGKIMSGIEGVDHYHEMRARRMGPHLLVDLHIQVDSMMSISAAHQVAERVRLEILEKLPAVNEVLVHVDAE 288
BLAST of mRNA_H-elongata_contig17736.4662.1 vs. uniprot
Match: A0A329SCH1_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SCH1_9STRA) HSP 1 Score: 216 bits (549), Expect = 1.120e-63 Identity = 129/273 (47.25%), Postives = 175/273 (64.10%), Query Frame = 1
Query: 1 AIITDAGHQLSNLLSDAVTLWAVRLSRLPPDDDHPYGRGRFEAVGAFIVTVMLMRAEYGIGNHVLDTLGEVVQGTERGS----TLP------RNT-----AVVAVVSIVAKEALFRATIAVGRRRNSQVLIANAWHHQTDAVSSVVALLAIVGSMCGASMLDPIAGLMVAGMVSLTGVQARLPRVSTDAMAQLTDAT-EYKVQHRVAEMATKVPGVLSFDRVRARRMGPQTLVDLTIQTDGMTSASAAQQTRMRMKWEILERIPIVADVMVNI 771
A+I DA H LS+LLSD VTLW+V+++RLPPD HPYG G++EAVG+ V +L+ GIG + E+ G S LP R+T A A +SI AKEALF AT+ +G++ NS+VLIANAWHH+TDA+SSVVAL I+GSM G +LDP+AG+ VA M+ TG + + D++ +LTD T E +V + E++ V VL +VRARRMGP TLVDL + D TS S AQQ R++ IL+ +P V++V+V+I
Sbjct: 112 ALIADAAHSLSDLLSDVVTLWSVKVARLPPDPKHPYGYGKYEAVGSLSVGAILVLCGLGIGADGFQAMQEIWNGAAATSLPELNLPFLSEIDRSTQLALAAGAAGISIAAKEALFNATVKIGKQANSKVLIANAWHHRTDAISSVVALGGIIGSMAGMPLLDPVAGMAVAAMIMKTGGE-----ICLDSVQELTDNTVEAEVLETLKEVSASVDDVLHVSQVRARRMGPYTLVDLRVHLDARTSISMAQQISERVRSYILQEVPDVSEVLVHI 379
BLAST of mRNA_H-elongata_contig17736.4662.1 vs. uniprot
Match: A0A833T1I5_PHYIN (Dimerization domain of Zinc Transporter n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833T1I5_PHYIN) HSP 1 Score: 215 bits (547), Expect = 2.070e-63 Identity = 131/273 (47.99%), Postives = 173/273 (63.37%), Query Frame = 1
Query: 1 AIITDAGHQLSNLLSDAVTLWAVRLSRLPPDDDHPYGRGRFEAVGAFIVTVMLMRAEYGIGNHVLDTLGEVVQGTERGS----TLP------RNT-----AVVAVVSIVAKEALFRATIAVGRRRNSQVLIANAWHHQTDAVSSVVALLAIVGSMCGASMLDPIAGLMVAGMVSLTGVQARLPRVSTDAMAQLTDAT-EYKVQHRVAEMATKVPGVLSFDRVRARRMGPQTLVDLTIQTDGMTSASAAQQTRMRMKWEILERIPIVADVMVNI 771
A+I DA H LS+LLSD VTLW+V+++RLPPD HPYG G++EAVG+ V +L+ GIG + E+ GT S TLP R+T A A VSI AKEALF AT+ +G++ NS+VLIANAWHH+TDA+SSVVAL I+GSM G +LDP+AG+ VA M+ TG + D++ +LTD T E +V + E++ V VL +VRARRMGP TLVDL + TS S AQQ R++ IL +P V +V+V+I
Sbjct: 108 ALIADAAHSLSDLLSDVVTLWSVKVARLPPDPMHPYGYGKYEAVGSLSVGAILVLCGLGIGADGFQAIQEIWNGTGASSLPEFTLPFLSDIDRSTQWALAAGAAGVSIAAKEALFHATVKIGKQANSKVLIANAWHHRTDAISSVVALGGIIGSMAGVPLLDPVAGMAVAAMIVKTGGD-----ICLDSVQELTDNTVEAEVLETLKEVSAGVDDVLHVSQVRARRMGPYTLVDLRVHLHARTSISMAQQISERVRSHILHEVPDVTEVLVHI 375 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17736.4662.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig17736.4662.1 >prot_H-elongata_contig17736.4662.1 ID=prot_H-elongata_contig17736.4662.1|Name=mRNA_H-elongata_contig17736.4662.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=260bp AIITDAGHQLSNLLSDAVTLWAVRLSRLPPDDDHPYGRGRFEAVGAFIVTback to top mRNA from alignment at H-elongata_contig17736:5076..7019+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig17736.4662.1 ID=mRNA_H-elongata_contig17736.4662.1|Name=mRNA_H-elongata_contig17736.4662.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1944bp|location=Sequence derived from alignment at H-elongata_contig17736:5076..7019+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig17736:5076..7019+ >mRNA_H-elongata_contig17736.4662.1 ID=mRNA_H-elongata_contig17736.4662.1|Name=mRNA_H-elongata_contig17736.4662.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1560bp|location=Sequence derived from alignment at H-elongata_contig17736:5076..7019+ (Himanthalia elongata Himel1 dioecious)back to top |