mRNA_H-elongata_contig176535.4621.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig176535.4621.1
Unique NamemRNA_H-elongata_contig176535.4621.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig176535.4621.1 vs. uniprot
Match: D7FI31_ECTSI (Glycerol-3-phosphate dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI31_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 6.560e-36
Identity = 62/83 (74.70%), Postives = 72/83 (86.75%), Query Frame = 1 
Query:    4 LTKDEAGKVMGAAVRDMMTGEEWEIEAKAVINATGCFCDSIRKMDNAEAEELITPAAGVHIVLPAHFSPSTMGLIVPKTSDGR 252
            L KDE G+  GA V+D +TGE+WE+ AKAVINATGCFCD+IRKMDN EA+ L+ PAAGVHI+LPAHFSP+ MGLIVPKTSDGR
Sbjct:  107 LVKDENGQTKGATVQDTITGEKWEVAAKAVINATGCFCDAIRKMDNPEAKNLVMPAAGVHIMLPAHFSPARMGLIVPKTSDGR 189
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BLAST of mRNA_H-elongata_contig176535.4621.1 vs. uniprot
Match: A0A7I6N0B8_9STRA (Mitochondrial glycerol-3-phosphate dehydrogenase (Fragment) n=1 Tax=Halophytophthora batemanensis TaxID=127446 RepID=A0A7I6N0B8_9STRA)

HSP 1 Score: 120 bits (301), Expect = 1.830e-31
Identity = 55/83 (66.27%), Postives = 68/83 (81.93%), Query Frame = 1 
Query:    4 LTKDEAGKVMGAAVRDMMTGEEWEIEAKAVINATGCFCDSIRKMDNAEAEELITPAAGVHIVLPAHFSPSTMGLIVPKTSDGR 252
            L KDE GKV GA V+D +TGEEW+++AK V+NATG F DS+R+MDN + E++  PAAGVH VLP HFSP+ MGLIVPKT+DGR
Sbjct:   23 LLKDEEGKVCGAHVQDTLTGEEWDVKAKGVVNATGPFTDSMRQMDNPDTEKICVPAAGVHTVLPDHFSPNRMGLIVPKTTDGR 105
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BLAST of mRNA_H-elongata_contig176535.4621.1 vs. uniprot
Match: A0A7I6MWH2_9STRA (Mitochondrial glycerol-3-phosphate dehydrogenase (Fragment) n=1 Tax=Phytopythium sindhum TaxID=795340 RepID=A0A7I6MWH2_9STRA)

HSP 1 Score: 120 bits (301), Expect = 2.940e-31
Identity = 56/83 (67.47%), Postives = 68/83 (81.93%), Query Frame = 1 
Query:    4 LTKDEAGKVMGAAVRDMMTGEEWEIEAKAVINATGCFCDSIRKMDNAEAEELITPAAGVHIVLPAHFSPSTMGLIVPKTSDGR 252
            L KD+ GKV GA VRD +TG+EW+I+AKAV+NATG F DS+R+MD+ E  ++  PAAGVH VLP HFSP+ MGLIVPKTSDGR
Sbjct:   87 LIKDDEGKVRGARVRDSLTGDEWDIKAKAVVNATGPFTDSLRQMDDPEVAKICVPAAGVHAVLPDHFSPNRMGLIVPKTSDGR 169
[Close]
BLAST of mRNA_H-elongata_contig176535.4621.1 vs. uniprot
Match: A0A7M3S7F9_PYTIN (Mitochondrial glycerol-3-phosphate dehydrogenase (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A7M3S7F9_PYTIN)

HSP 1 Score: 118 bits (296), Expect = 3.950e-31
Identity = 55/84 (65.48%), Postives = 68/84 (80.95%), Query Frame = 1 
Query:    1 RLTKDEAGKVMGAAVRDMMTGEEWEIEAKAVINATGCFCDSIRKMDNAEAEELITPAAGVHIVLPAHFSPSTMGLIVPKTSDGR 252
            +L KD  GKV GA V+D +TGEEW+I+A+AV+NATG F D IR+MD+ E  ++  PAAGVH+VLP HFSPS MGLIVPKT+DGR
Sbjct:   10 KLLKDADGKVCGAHVKDTLTGEEWDIKAQAVVNATGPFTDGIRQMDDPETPKICVPAAGVHVVLPDHFSPSRMGLIVPKTTDGR 93
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BLAST of mRNA_H-elongata_contig176535.4621.1 vs. uniprot
Match: A0A7M3S7F7_9STRA (Mitochondrial glycerol-3-phosphate dehydrogenase (Fragment) n=1 Tax=Lagenidium giganteum TaxID=4803 RepID=A0A7M3S7F7_9STRA)

HSP 1 Score: 119 bits (298), Expect = 4.530e-31
Identity = 56/83 (67.47%), Postives = 67/83 (80.72%), Query Frame = 1 
Query:    4 LTKDEAGKVMGAAVRDMMTGEEWEIEAKAVINATGCFCDSIRKMDNAEAEELITPAAGVHIVLPAHFSPSTMGLIVPKTSDGR 252
            L KD+ GK+ GA VRD +TGEEW+I+A AV+NATG F D IR+MD+ + E++  PAAGVH VLP HFSPS MGLIVPKTSDGR
Sbjct:   72 LIKDDEGKIRGAHVRDTLTGEEWDIKAHAVVNATGPFTDGIRQMDDPKKEKICVPAAGVHAVLPDHFSPSRMGLIVPKTSDGR 154
[Close]
BLAST of mRNA_H-elongata_contig176535.4621.1 vs. uniprot
Match: A0A7I6MY10_PYTOL (Mitochondrial glycerol-3-phosphate dehydrogenase (Fragment) n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A7I6MY10_PYTOL)

HSP 1 Score: 117 bits (293), Expect = 1.330e-30
Identity = 54/84 (64.29%), Postives = 68/84 (80.95%), Query Frame = 1 
Query:    1 RLTKDEAGKVMGAAVRDMMTGEEWEIEAKAVINATGCFCDSIRKMDNAEAEELITPAAGVHIVLPAHFSPSTMGLIVPKTSDGR 252
            +L KDE GK+ GA V+D +TGEEW+I+A AV+NATG F D IR MD+ + +++  PAAGVH+VLP HFSPS MGLIVPKT+DGR
Sbjct:   22 KLLKDENGKLCGAHVKDQLTGEEWDIKATAVVNATGPFTDGIRLMDDPKKQKICVPAAGVHVVLPDHFSPSRMGLIVPKTTDGR 105
[Close]
BLAST of mRNA_H-elongata_contig176535.4621.1 vs. uniprot
Match: A0A7I6N0C7_9STRA (Mitochondrial glycerol-3-phosphate dehydrogenase (Fragment) n=1 Tax=Pythium monospermum TaxID=92964 RepID=A0A7I6N0C7_9STRA)

HSP 1 Score: 118 bits (295), Expect = 1.770e-30
Identity = 55/84 (65.48%), Postives = 68/84 (80.95%), Query Frame = 1 
Query:    1 RLTKDEAGKVMGAAVRDMMTGEEWEIEAKAVINATGCFCDSIRKMDNAEAEELITPAAGVHIVLPAHFSPSTMGLIVPKTSDGR 252
            +L KDE GK+ GA V+D +TGEEW+I+AKAV+NATG F D IR MD+ +  ++  PAAGVH+VLP HFSPS MGLIVPKT+DGR
Sbjct:   78 KLLKDENGKLCGAHVKDTLTGEEWDIKAKAVVNATGPFTDGIRLMDDPKKPKICVPAAGVHVVLPDHFSPSRMGLIVPKTTDGR 161
[Close]
BLAST of mRNA_H-elongata_contig176535.4621.1 vs. uniprot
Match: A0A7M3S7F6_9STRA (Mitochondrial glycerol-3-phosphate dehydrogenase (Fragment) n=1 Tax=Pythium caudatum TaxID=1278159 RepID=A0A7M3S7F6_9STRA)

HSP 1 Score: 114 bits (286), Expect = 6.790e-30
Identity = 54/83 (65.06%), Postives = 66/83 (79.52%), Query Frame = 1 
Query:    4 LTKDEAGKVMGAAVRDMMTGEEWEIEAKAVINATGCFCDSIRKMDNAEAEELITPAAGVHIVLPAHFSPSTMGLIVPKTSDGR 252
            L KD  GKV GA V+D +TGEEW+I+A+AV+NATG F D IR MD+   +++  PAAGVH+VLP HFSPS MGLIVPKT+DGR
Sbjct:   39 LLKDADGKVCGAHVKDSITGEEWDIKAQAVVNATGPFTDGIRLMDDPTKQKICVPAAGVHVVLPDHFSPSRMGLIVPKTTDGR 121
[Close]
BLAST of mRNA_H-elongata_contig176535.4621.1 vs. uniprot
Match: A0A7I6MYL9_9STRA (Mitochondrial glycerol-3-phosphate dehydrogenase (Fragment) n=3 Tax=Oomycota TaxID=4762 RepID=A0A7I6MYL9_9STRA)

HSP 1 Score: 116 bits (290), Expect = 7.560e-30
Identity = 55/83 (66.27%), Postives = 67/83 (80.72%), Query Frame = 1 
Query:    4 LTKDEAGKVMGAAVRDMMTGEEWEIEAKAVINATGCFCDSIRKMDNAEAEELITPAAGVHIVLPAHFSPSTMGLIVPKTSDGR 252
            L KD+ GKV GA V+D +TGEEW+I+A AV+NATG F DSIR MD+ + +++  PAAGVH VLP HFSP+ MGLIVPKTSDGR
Sbjct:   23 LLKDDEGKVRGAHVQDTLTGEEWDIKAHAVVNATGPFTDSIRLMDDPKKQKICVPAAGVHAVLPDHFSPNRMGLIVPKTSDGR 105
[Close]
BLAST of mRNA_H-elongata_contig176535.4621.1 vs. uniprot
Match: A0A1W0A6Y2_9STRA (Glycerol-3-phosphate dehydrogenase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A6Y2_9STRA)

HSP 1 Score: 119 bits (299), Expect = 1.080e-29
Identity = 56/83 (67.47%), Postives = 65/83 (78.31%), Query Frame = 1 
Query:    4 LTKDEAGKVMGAAVRDMMTGEEWEIEAKAVINATGCFCDSIRKMDNAEAEELITPAAGVHIVLPAHFSPSTMGLIVPKTSDGR 252
            + KD  GKV G AV+D+M+G+EW I  K VINATG F DSIRKMDN E + +  PAAGVH+VLP HFSP+ MGLIVPKTSDGR
Sbjct:  264 IRKDTNGKVCGVAVKDVMSGKEWSIPCKTVINATGPFTDSIRKMDNPEVQNICVPAAGVHVVLPDHFSPNRMGLIVPKTSDGR 346
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig176535.4621.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FI31_ECTSI6.560e-3674.70Glycerol-3-phosphate dehydrogenase n=1 Tax=Ectocar... [more]
A0A7I6N0B8_9STRA1.830e-3166.27Mitochondrial glycerol-3-phosphate dehydrogenase (... [more]
A0A7I6MWH2_9STRA2.940e-3167.47Mitochondrial glycerol-3-phosphate dehydrogenase (... [more]
A0A7M3S7F9_PYTIN3.950e-3165.48Mitochondrial glycerol-3-phosphate dehydrogenase (... [more]
A0A7M3S7F7_9STRA4.530e-3167.47Mitochondrial glycerol-3-phosphate dehydrogenase (... [more]
A0A7I6MY10_PYTOL1.330e-3064.29Mitochondrial glycerol-3-phosphate dehydrogenase (... [more]
A0A7I6N0C7_9STRA1.770e-3065.48Mitochondrial glycerol-3-phosphate dehydrogenase (... [more]
A0A7M3S7F6_9STRA6.790e-3065.06Mitochondrial glycerol-3-phosphate dehydrogenase (... [more]
A0A7I6MYL9_9STRA7.560e-3066.27Mitochondrial glycerol-3-phosphate dehydrogenase (... [more]
A0A1W0A6Y2_9STRA1.080e-2967.47Glycerol-3-phosphate dehydrogenase n=1 Tax=Thraust... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig176535contigH-elongata_contig176535:314..954 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.5
Seed ortholog evalue3.3e-22
Seed eggNOG ortholog112098.XP_008614159.1
KEGG rclassRC00029
KEGG koko:K00111
KEGG ReactionR00848
KEGG Pathwayko00564,ko01110,map00564,map01110
EggNOG free text desc.sn-glycerol-3-phosphate:ubiquinone-8 oxidoreductase activity
EggNOG OGsCOG0578@1,KOG0042@2759
EC1.1.5.3
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size252
Cds size222
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig176535.4621.1prot_H-elongata_contig176535.4621.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig176535 344..954 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930021.8898373-UTR-H-elongata_contig176535:313..3431622930021.8898373-UTR-H-elongata_contig176535:313..343Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig176535 314..343 +
1691679249.642129-UTR-H-elongata_contig176535:313..3431691679249.642129-UTR-H-elongata_contig176535:313..343Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig176535 314..343 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930021.90675-CDS-H-elongata_contig176535:343..4411622930021.90675-CDS-H-elongata_contig176535:343..441Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig176535 344..441 +
1691679249.6574254-CDS-H-elongata_contig176535:343..4411691679249.6574254-CDS-H-elongata_contig176535:343..441Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig176535 344..441 +
1622930021.9226391-CDS-H-elongata_contig176535:830..9541622930021.9226391-CDS-H-elongata_contig176535:830..954Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig176535 831..954 +
1691679249.667478-CDS-H-elongata_contig176535:830..9541691679249.667478-CDS-H-elongata_contig176535:830..954Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig176535 831..954 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig176535.4621.1

>prot_H-elongata_contig176535.4621.1 ID=prot_H-elongata_contig176535.4621.1|Name=mRNA_H-elongata_contig176535.4621.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp
MGAAVRDMMTGEEWEIEAKAVINATGCFCDSIRKMDNAEAEELITPAAGV
HIVLPAHFSPSTMGLIVPKTSDGR
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mRNA from alignment at H-elongata_contig176535:314..954+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig176535.4621.1 ID=mRNA_H-elongata_contig176535.4621.1|Name=mRNA_H-elongata_contig176535.4621.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=641bp|location=Sequence derived from alignment at H-elongata_contig176535:314..954+ (Himanthalia elongata Himel1 dioecious)
AGGCTTACGAAAGACGAAGCCGGGAAGGTCATGGGCGCCGCGGTGCGAGA
TATGATGACGGGGGAGGAGTGGGAGATCGAAGCTAAGGCGGTGATCAACG
CCACGGGTTGCTTCTGCGACTCGATACGGTGAGACCGGCCGATGTGATGA
GAGAATGGGTCGATGGTGAGTGCTTGAGGGAGCGGGGGGGGGGCGGGTGG
AATAGGTCACGGTGCTTCGCAGGGATGTACATCCAGTTTGGTTCGGTTTT
GTCTCTTTTTTTTGGGTGGGGGGGGGGGGAGGGGGGGAGAGGGGAGGAAT
GGTCGTTGCGAAAATCGCCTTCAGTGCATGGTGTGTGTATTAAAATACAA
CGTCGGGATGTGAATGTTACTATTTTTATGCCGAAAAGGCTAAGAATACC
ACATTAATATGCCATAGAAGCTCTCGTGAGTGACATTTCCACACGCTATA
CCCGCGCCTCCTTCCTTCGACAACGAAACCTATCGTCCCTCGCGGCATTA
TTCGTCGGCTGGATAAGAAAAATGGACAATGCAGAAGCGGAGGAACTAAT
TACACCTGCAGCCGGCGTTCATATCGTGCTCCCGGCGCACTTTAGCCCCT
CCACGATGGGTCTTATCGTGCCGAAGACGTCAGACGGGAGG
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Coding sequence (CDS) from alignment at H-elongata_contig176535:314..954+

>mRNA_H-elongata_contig176535.4621.1 ID=mRNA_H-elongata_contig176535.4621.1|Name=mRNA_H-elongata_contig176535.4621.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at H-elongata_contig176535:314..954+ (Himanthalia elongata Himel1 dioecious)
ATGGGCGCCGCGGTGCGAGATATGATGACGGGGGAGGAGTGGGAGATCGA
AGCTAAGGCGGTGATCAACGCCACGGGTTGCTTCTGCGACTCGATACGAT
GGGCGCCGCGGTGCGAGATATGATGACGGGGGAGGAGTGGGAGATCGAAG
CTAAGGCGGTGATCAACGCCACGGGTTGCTTCTGCGACTCGATACGAAAA
ATGGACAATGCAGAAGCGGAGGAACTAATTACACCTGCAGCCGGCGTTCA
TATCGTGCTCCCGGCGCACTTTAGCCCCTCCACGATGGGTCTTATCGTGC
CGAAGACGTCAGACGGGAGGAAAAATGGACAATGCAGAAGCGGAGGAACT
AATTACACCTGCAGCCGGCGTTCATATCGTGCTCCCGGCGCACTTTAGCC
CCTCCACGATGGGTCTTATCGTGCCGAAGACGTCAGACGGGAGG
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