mRNA_H-elongata_contig17591.4590.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17591.4590.1
Unique NamemRNA_H-elongata_contig17591.4590.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17591.4590.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17591contigH-elongata_contig17591:1375..6336 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.0
Seed ortholog evalue4e-12
Seed eggNOG ortholog2880.D8LCM6
EggNOG free text desc.ubiE/COQ5 methyltransferase family
EggNOG OGs2CZJF@1,2SANJ@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size3848
Cds size834
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17591.4590.1prot_H-elongata_contig17591.4590.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17591 1588..3535 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930019.4020832-UTR-H-elongata_contig17591:1374..15871622930019.4020832-UTR-H-elongata_contig17591:1374..1587Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17591 1375..1587 +
1691679248.4544072-UTR-H-elongata_contig17591:1374..15871691679248.4544072-UTR-H-elongata_contig17591:1374..1587Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17591 1375..1587 +
1622930019.4470055-UTR-H-elongata_contig17591:3535..63361622930019.4470055-UTR-H-elongata_contig17591:3535..6336Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17591 3536..6336 +
1691679248.503652-UTR-H-elongata_contig17591:3535..63361691679248.503652-UTR-H-elongata_contig17591:3535..6336Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17591 3536..6336 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930019.4145477-CDS-H-elongata_contig17591:1587..20231622930019.4145477-CDS-H-elongata_contig17591:1587..2023Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17591 1588..2023 +
1691679248.4726014-CDS-H-elongata_contig17591:1587..20231691679248.4726014-CDS-H-elongata_contig17591:1587..2023Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17591 1588..2023 +
1622930019.4250624-CDS-H-elongata_contig17591:2757..29511622930019.4250624-CDS-H-elongata_contig17591:2757..2951Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17591 2758..2951 +
1691679248.4835443-CDS-H-elongata_contig17591:2757..29511691679248.4835443-CDS-H-elongata_contig17591:2757..2951Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17591 2758..2951 +
1622930019.434479-CDS-H-elongata_contig17591:3331..35351622930019.434479-CDS-H-elongata_contig17591:3331..3535Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17591 3332..3535 +
1691679248.4932396-CDS-H-elongata_contig17591:3331..35351691679248.4932396-CDS-H-elongata_contig17591:3331..3535Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17591 3332..3535 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17591.4590.1

>prot_H-elongata_contig17591.4590.1 ID=prot_H-elongata_contig17591.4590.1|Name=mRNA_H-elongata_contig17591.4590.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=278bp
MTEPDCAVMCNLINIYTHTHTQHALRRRREAGLTSGDEWWVIFSQETSDS
TYRCRRKGAKSHSFRLANTVSNQRKIWQVLQQLCRGHAELDMLLLVFCLR
VRLSCNDSQQFHRVLKPGGMAIFAAWDKDPNSIAMRMVGVIGTLKRPESD
PVDDAPIDIQPLGGDEGLKAMEKAGFADVNKLQIAIPFYVPPGIGLRELF
PFMVNPTPINGILSAIEESGNANVRDQAAAMFESQIQADIAQGRGPTGPG
LYAAKGSGDPAFYMNAVIVEGYRKTGM*
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mRNA from alignment at H-elongata_contig17591:1375..6336+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17591.4590.1 ID=mRNA_H-elongata_contig17591.4590.1|Name=mRNA_H-elongata_contig17591.4590.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4962bp|location=Sequence derived from alignment at H-elongata_contig17591:1375..6336+ (Himanthalia elongata Himel1 dioecious)
AAGGCAGACGGGAGAGCGTGGTCCATTAGGGGCCGACCGAAGCTATATGG
TGAACAAGGAAGTAGAGAGGGAAGCGCAAGGTATTGACGATTTAGATACG
AAATGTAGCGATATTATGTCTCCTTTGACACGTCTGATCAGAGGTGCTTG
TAGAAAATATGATTGAATCCCCCATTGGGAAGATCAATGCGAGAGTAGCC
TAGAATAACTAGCATGACAGAGCCGGATTGCGCGGTTATGTGTAATTTAA
TAAATATATACACACACACACACACACAACACGCGTTGCGCAGGAGACGA
GAGGCAGGCCTAACGAGTGGCGATGAATGGTGGGTGATTTTCAGCCAAGA
AACCAGCGACTCTACATATAGATGCAGGCGAAAGGGAGCAAAGTCCCATA
GCTTTAGACTTGCTAATACAGTTTCTAACCAGCGAAAAATATGGCAAGTG
CTGCAGCAGCTGTGTCGGGGCCATGCCGAACTTGATATGCTTCTACTGGT
ATTTTGTCTCCGCGTTCGCTTATCCTGCAATGATTCCCAGCAATTCCACC
GAGTGCTAAAGCCGGGTGGAATGGCAATCTTCGCCGCGTGGGATAAAGAC
CCCAACAGCATCGCCATGAGGATGGTGGGGGTGATAGGAACTCTAAAACG
TGAGTCTGCACAGAGGCTGAATCTCCTATTTCTCGGAAGACGTCGCCATG
TTAGGCGGTGTCGAGCGCTGCAGCATCTTGGCTGTAGGGTGCGGTGGTGA
ATATAGCAAAGCTGCTGCAGGAGTATGTTTGGAGGCAGTGTTGCTAGCCA
TATCGAATTGAGATGATTTTACTTGTATCATGGTGACCCCCCCCCACTAC
ACAAGATCACTTTATACATACGTATATATATATATATATAATAAAATAGT
TACGGCAGATATCATATATCATCGCCCGAGTAATCTAATTCGTAACCACC
AACTACTATAATACTACTATAGCTCTAGAGCTAACTAACGTCTTTGTTCG
AAAGCCATGAGTACGATACAAACACTAATACCTATGCCCCCGAACTATCC
TCCACCAAATATACTACTGGCTGCAATCTGTATGATATGGTCACCTTTTG
AAAGTATGTTCTTGCATCTGTAGTGGAAGACTTGAGGTTGGGAGTAGCCG
AAAATCAGCCAGTGACTGACGACATGTAGGAGTGCTGTAATTGCTTCACG
TTTTAAATCGTCGTAGGTGTGAAACGGGGAGCGGGATGGGTTGACCCCTT
AGTGCCACATGTAAGATAGTAGAATATTGCTACAGCGGGTGGTAACGGTA
TAATCCAGCACGTTGGCGGGCCCACTGGCAGGTAGTAAAAATTCAGTACG
ATTTTGGGCGCCTTGTTTCTCTCCCTGCAGCAGGTCCAGAGTCTGATCCG
GTCGATGACGCGCCCATCGATATACAGCCTCTTGGTGGAGATGAAGGCTT
GAAGGCAATGGAAAAGGCCGGTTTCGCCGACGTGAACAAGTTACAGATCG
CCATCCCATTTTATGTCCCGCCCGGCATCGGACTGCGAGAACTGTTCCCC
TTCATGGTAAACCCGACGCCGATAAACGTGAGTAAAGTCAGCTATCGATA
TCGATACCGTTCGCCACAAGAGCACATGATTTAACGGCGCTGGGGAAATC
CCCGCGACGTGCTGGACTGGAAATGCCGCGAGGGATTTCTACTTTTTATC
TGAAATTCACAACGAACAGTAGCATAGATGGTTGTCACAATCACACCATC
AGCACTGCTCACAACGGATTACAACGTAAAATAGAGTACGTAGAAGGAGG
CGTCACTCTACTCCAATTTAAGCGGTCAAAGCATAGACCATATTAAGACG
TTGAAATAAGATATCCGTGAGGGCCAAATTCCTTTTGACCGAACTGTCAA
TTTATGTTTTGTTTTGCATGGACACTCACTCATGCCGATCTCTACGTGGC
TCTGCAGGGCATTCTTTCCGCCATTGAGGAGAGTGGCAATGCAAACGTGC
GCGATCAAGCAGCTGCCATGTTTGAGAGTCAGATCCAGGCGGATATCGCC
CAGGGGCGTGGACCCACCGGCCCCGGCTTGTATGCAGCGAAGGGCAGTGG
TGACCCTGCTTTCTACATGAACGCGGTTATCGTTGAGGGCTACCGTAAGA
CTGGCATGTGAAAGCTGCAAAAGCAACTCTGACCGATTGAGAACAAGATG
GAAACACTTACAAGCACGCAGTTTTCGTAAAGCTCGACAATGACTCGACA
ATTCACCGCTACGTTTGTGCGTGAGCGACGAAAGCTAGCTCCAAAAGCAG
GGCAGACAGCGCTGTTTCTGGGCAGAGCCAAAAATTCTACTAGCAAACCA
GGAATATATATTTAATAGATGTGAGGGGAGTCCATGGAGAAAGCCTTTGG
TTTGCTTTTGATGCGTATTTGTGTTTGTGTCTGGGTTTGTGCAGCATGTG
TCCGTCGCGGTATGTGTACCGAGTCCGCCCGTGCGCTTGTTTGTGGTTGG
TTCGCCCCTCTATTGATGCTACCGGCCTCGTCATCTCGCGGGTTCGGTTT
GGGATTGATATAGCTTTTATCCATCTTGTGTGTTGCTCATGCTTTTAGCG
TGTCCTGTCTGTGGCATATCCCCTGGGTGCCTTCTCTCTCTATTTCTTGT
CGTATTACAATATGTATATATAGAGAGAGAGAAAACAGTCGTGATGCAAA
GTTCCTGCATTGAAGAATGGAAGGCGTGTCTGCATCTACTATGAAGCATC
CGATGCTCCACGGGTTTATACTCTCTTGCTATTCAATAGCCCACTCTTAA
GCAACGCGGATGTGCGCCGAGGGCTTTATTAGACGAGGATTATTCGAGGT
GTTCGTATTTATATCGTGAGGTCACGTGATAAACGTCGGGATGTAATGGC
GAGCTATGTAATACGTAAATTTGTTTCGAACCTTCGAGACGGAAATTATA
TATTTTTACTCTTCTGACCCTTATAATAGCAAATTTGTCCAAGTGACAGG
GACTATATTGCGGCTACCGCCCACCGTAGAAGCCTACGCCCACTCTCTTC
CCCTTCCCTGCCTCTATCTGCGGAATTTGCTGGATATTACTAGTCCCTTC
GTTCTTGGCAAAACGCCAACCAACGGAAAACCCCGATGGTGGAGCACGTC
AACAACTTTCAAAGGCTGAGGGAGAAGAATGCACAAATAGGCAGGTGGAC
GACGTGATCATTTTCCACAGTGACGCCTTCAGGAGTAGTGGGTTTAGTCT
TAAACTGTTGGAGTCGTGTACACATGCACTCATCACCGAGCCACTCTGGG
ATTCTTTGGGCGAGACTCACAGCAACATTTACAGTATTGGGGGGCGAGTT
GCTGAATGGGTTGTTTCTACTCGGGCGGTATTTGTGACCGCAAGCTAGGT
TGTCCAGGTGGATTTTCATTCTGGGCCACGACGTGATCAATGTGAAACTT
GTATATCTCAAGTACGACCTACGCGCTGCAGGAGATGCGAACAAACAACT
GTCGCCAACCGACGATTTGTGGTTCGCTAGACACAACTAGCTGCTTAGGA
AGTGTCCGGGAAGAGTCCTAGGATCGTGGCTTGCATCTAGGAGATCATTT
GTGAGTTCTTAGATGATTTTTATGCAGAGCCGTCAGATGGGTGACGGGAC
ATTTTCTTTGGGGCCACCGTGACCGACAGGTCGAGTTCGCGAATGGCCTG
CGCGGTGCGGCAGTTGCGCACGGATAGTTGCCATAAACCTATATCCATTC
ACAGTTCGCTGGACTGGACTAGTAGCTGATCAGGCAATGTTTGGGGAAGG
GCGTGTGCTCGCTCATGCTGGGGATAAGTGAGGGGTTAGCTCTAGTCCCC
TGCATGTGTTTATGGCGTAGGGATACCAACGGGGCAAACGTGTTCTCGAT
TTCATACCTTATATCATGTATGGTGTAAGCTATAAACATTGTCTCATGGA
TTATTATTTCAGCACTTCGTGCTCACGTGTATACTTGCCGGGCCAAAATA
TTCTTCTTCGGACCACCGCCATTCAGACTGAATGTCTGTCTGAACGCCTC
CAAAAGCGGATGGGTGACGGGCCATTTTGTCCGAGGGTAACAGGCCGAGT
TCGATCATGGTCTGTTATATGCGGCAGTTACGCACGTACATTAATCGTCA
ATCTCTTTATTTTCAGTTCACGGGATGGGACTAGTAGCTACTCAGGAAGC
GTTTGGGGAAGGATATGTGCTTGCTCATACTGGGGGTAAGTGGGGGATTA
GTCTCTTGTGAATTCATAGCACCTGGTACCATTTTGTGGGCTTATCCCGT
AGTCATGTCAATGGGGCAAACGTGGTTTCGATTTCATACCTTCTCTAATT
TATATAGTGTGAGCTGTAAACATTGTCTGATGGAGAGCTATTTCAGTAAC
GTACTTCGTATCCACGCGTATACTTGTCGGGCCAAACTATATTTCGACGG
AGCAACCCCTCGCAGACTTCATGGGCGTCTCAGCGTCTTGGTTGTGGATG
ACCACAGAGACACATAATGGACATGGAGCATGATATTGGTGTTAAACTGA
GTACGCTTGCTTAGTTATGACCAAGCATTGATTTTACATTTAGCTGCCTA
GGGCATCGGCTTTGAAGAGTTCACCCTCTCGGAGTGGCTCTAACAAAATA
TTTATCTGGCAGCTAAGTGATTGGTAACTTTGACGTCCCCTTTCTACATT
CTTCTTCATTTATACGTGTCGATCTCTCGTTGCCCTACGTTAACGTCTAC
TGAACAGGTGAATACTGGTATTATTGGCCTCTGAATTTCTCTGGAATTCG
TCCAAGGCATGGTTCCCTCCTCTAGACATTTCCGCCCCATATTGCCCCTC
TCACCATCGGCCCTACCGTATAACAAAGTAATGAAAGACAAACATATCGC
CCTACTAATACCAACAAGATACACCCTTCTAGGGTCCTGCCACACCCACC
CGTCCTTGGTTC
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Coding sequence (CDS) from alignment at H-elongata_contig17591:1375..6336+

>mRNA_H-elongata_contig17591.4590.1 ID=mRNA_H-elongata_contig17591.4590.1|Name=mRNA_H-elongata_contig17591.4590.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1668bp|location=Sequence derived from alignment at H-elongata_contig17591:1375..6336+ (Himanthalia elongata Himel1 dioecious)
ATGACAGAGCCGGATTGCGCGGTTATGTGTAATTTAATAAATATATACAC
ACACACACACACACAACACGCGTTGCGCAGGAGACGAGAGGCAGGCCTAA
CGAGTGGCGATGAATGGTGGGTGATTTTCAGCCAAGAAACCAGCGACTCT
ACATATAGATGCAGGCGAAAGGGAGCAAAGTCCCATAGCTTTAGACTTGC
TAATACAGTTTCTAACCAGCGAAAAATATGGCAAGTGCTGCAGCAGCTGT
GTCGGGGCCATGCCGAACTTGATATGCTTCTACTGGTATTTTGTCTCCGC
GTTCGCTTATCCTGCAATGATTCCCAGCAATTCCACCGAGTGCTAAAGCC
GGGTGGAATGGCAATCTTCGCCGCGTGGGATAAAGACCCCAACAGCATCG
CCATGAGGATGGTGGGGGTGATAGGAACTCTAAAACATGACAGAGCCGGA
TTGCGCGGTTATGTGTAATTTAATAAATATATACACACACACACACACAC
AACACGCGTTGCGCAGGAGACGAGAGGCAGGCCTAACGAGTGGCGATGAA
TGGTGGGTGATTTTCAGCCAAGAAACCAGCGACTCTACATATAGATGCAG
GCGAAAGGGAGCAAAGTCCCATAGCTTTAGACTTGCTAATACAGTTTCTA
ACCAGCGAAAAATATGGCAAGTGCTGCAGCAGCTGTGTCGGGGCCATGCC
GAACTTGATATGCTTCTACTGGTATTTTGTCTCCGCGTTCGCTTATCCTG
CAATGATTCCCAGCAATTCCACCGAGTGCTAAAGCCGGGTGGAATGGCAA
TCTTCGCCGCGTGGGATAAAGACCCCAACAGCATCGCCATGAGGATGGTG
GGGGTGATAGGAACTCTAAAACGTCCAGAGTCTGATCCGGTCGATGACGC
GCCCATCGATATACAGCCTCTTGGTGGAGATGAAGGCTTGAAGGCAATGG
AAAAGGCCGGTTTCGCCGACGTGAACAAGTTACAGATCGCCATCCCATTT
TATGTCCCGCCCGGCATCGGACTGCGAGAACTGTTCCCCTTCATGGTAAA
CCCGACGCCGATAAACGTCCAGAGTCTGATCCGGTCGATGACGCGCCCAT
CGATATACAGCCTCTTGGTGGAGATGAAGGCTTGAAGGCAATGGAAAAGG
CCGGTTTCGCCGACGTGAACAAGTTACAGATCGCCATCCCATTTTATGTC
CCGCCCGGCATCGGACTGCGAGAACTGTTCCCCTTCATGGTAAACCCGAC
GCCGATAAACGGCATTCTTTCCGCCATTGAGGAGAGTGGCAATGCAAACG
TGCGCGATCAAGCAGCTGCCATGTTTGAGAGTCAGATCCAGGCGGATATC
GCCCAGGGGCGTGGACCCACCGGCCCCGGCTTGTATGCAGCGAAGGGCAG
TGGTGACCCTGCTTTCTACATGAACGCGGTTATCGTTGAGGGCTACCGTA
AGACTGGCATGTGAGGCATTCTTTCCGCCATTGAGGAGAGTGGCAATGCA
AACGTGCGCGATCAAGCAGCTGCCATGTTTGAGAGTCAGATCCAGGCGGA
TATCGCCCAGGGGCGTGGACCCACCGGCCCCGGCTTGTATGCAGCGAAGG
GCAGTGGTGACCCTGCTTTCTACATGAACGCGGTTATCGTTGAGGGCTAC
CGTAAGACTGGCATGTGA
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