mRNA_H-elongata_contig17589.4588.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17589.4588.1
Unique NamemRNA_H-elongata_contig17589.4588.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig17589.4588.1 vs. uniprot
Match: D8LRR1_ECTSI (Proteasome subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRR1_ECTSI)

HSP 1 Score: 438 bits (1126), Expect = 2.720e-154
Identity = 211/255 (82.75%), Postives = 233/255 (91.37%), Query Frame = 1 
Query:    1 MLCHATA---RGTGRVTASMDSMDGTRQHTSQPIVTGTSVLGIKYKDGVMLAADTLASYGSLARYKNVERIKPVGDCTLIGASGEYSDFQNIIQMMEENHQFDLNVEDGFEMSPSEYFNLLRAIMYNRRNDFNPLWNYLLIAGCQKDGKPFLGSVDHIGTCYEDNILATGFGGHLALPILRKKWRPDLEEGEARALLEDCMRVLFYRDCRSLNRIQIAKATVEGTVVSDPFTVETSWNLASFAQPKAGEDTDGSW 756
            MLCH+ A   RG G  TA   +MDGTRQHTSQPIVTGTSVLGIKYKDGVMLAADTLASYGSLARYKNVER+KPVG+CTLIGASGEYSDFQ+I++ +E+ HQ+D+N++DGFE SP+E +NLLR IMYNRRN FNPLWNYLLIAGC+KDG  FLGSVDHIGTCYEDNILATGFGGHLALPILRKKWRPDLEEGEARALLEDCMRVLFYRDCR+LNRIQIAKAT EGTVVSD + V+T W+LASF+QPKAG+DTDGSW
Sbjct:    1 MLCHSAAGPARGAGHATA---AMDGTRQHTSQPIVTGTSVLGIKYKDGVMLAADTLASYGSLARYKNVERLKPVGECTLIGASGEYSDFQHIMETLEDYHQYDVNMDDGFERSPAEIYNLLRTIMYNRRNKFNPLWNYLLIAGCKKDGTAFLGSVDHIGTCYEDNILATGFGGHLALPILRKKWRPDLEEGEARALLEDCMRVLFYRDCRALNRIQIAKATAEGTVVSDAYKVDTEWSLASFSQPKAGQDTDGSW 252
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BLAST of mRNA_H-elongata_contig17589.4588.1 vs. uniprot
Match: A0A835Z5Q8_9STRA (Proteasome subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5Q8_9STRA)

HSP 1 Score: 367 bits (941), Expect = 7.940e-126
Identity = 177/234 (75.64%), Postives = 205/234 (87.61%), Query Frame = 1 
Query:   58 MDGTRQHTSQPIVTGTSVLGIKYKDGVMLAADTLASYGSLARYKNVERIKPVGDCTLIGASGEYSDFQNIIQMMEENHQFDLNVEDGFEMSPSEYFNLLRAIMYNRRNDFNPLWNYLLIAGCQ-KDGKPFLGSVDHIGTCYEDNILATGFGGHLALPILRKKWRPDLEEGEARALLEDCMRVLFYRDCRSLNRIQIAKATVEGTVVSDPFTVETSWNLASFAQPKAGEDTDGSW 756
            MD  RQ T  PIVTGTSV+G+KYKDGVMLAADTLASYGSLARYK+VERI+PVG+ TL+GASGEYSDFQ I++M+E+  Q D N++DGF+ +P+E  + LRA+MYNRRN  NPLWNYLLIAG   + G  FLGSVDHIGT YED+ILATGFG HLALPILR++WR D+EEGEARALLEDCMRVLFYRDCR+LNRIQIAKAT EG +VSDP+T+ETSW+LA+FAQPKAG DTDGSW
Sbjct:   38 MDAPRQRTQSPIVTGTSVIGLKYKDGVMLAADTLASYGSLARYKSVERIRPVGESTLLGASGEYSDFQAIMEMLEDQTQEDRNMDDGFKRAPAEVHSYLRAVMYNRRNKMNPLWNYLLIAGVNPRTGGFFLGSVDHIGTAYEDDILATGFGAHLALPILRRRWRADMEEGEARALLEDCMRVLFYRDCRALNRIQIAKATREGVLVSDPYTIETSWSLAAFAQPKAGADTDGSW 271
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BLAST of mRNA_H-elongata_contig17589.4588.1 vs. uniprot
Match: A0A7S2RSS8_9STRA (Proteasome subunit beta n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RSS8_9STRA)

HSP 1 Score: 325 bits (833), Expect = 2.040e-109
Identity = 156/228 (68.42%), Postives = 190/228 (83.33%), Query Frame = 1 
Query:   73 QHTSQPIVTGTSVLGIKYKDGVMLAADTLASYGSLARYKNVERIKPVGDCTLIGASGEYSDFQNIIQMMEENHQFDLNVEDGFEMSPSEYFNLLRAIMYNRRNDFNPLWNYLLIAGCQKDGKPFLGSVDHIGTCYEDNILATGFGGHLALPILRKKWRPDLEEGEARALLEDCMRVLFYRDCRSLNRIQIAKATVEGTVVSDPFTVETSWNLASFAQPKAGEDTDGSW 756
            QHT++PIVTGTSV+GIKYKDGVMLAADTLASYG+LA +K+VERI  V D  LIGA GEYSDFQ I Q+++     D N++DG + SPSE F+ LRA+MY RRN  NPLWN++L+AG  K+GK FLGSVD IGT +ED+ LATGFG +LA+PILRKKWRPDL+EGEARALLE+C+RVLFYRDCR+LN+I++AKAT EG+V+SDP+T+ETSW+ ASF   K G D DG W
Sbjct:   44 QHTTRPIVTGTSVIGIKYKDGVMLAADTLASYGTLAMFKDVERIHKVSDSCLIGAGGEYSDFQKIQQVLDRLTSEDRNMDDGHQTSPSEIFHYLRAVMYQRRNKMNPLWNHVLVAGF-KEGKSFLGSVDLIGTAFEDDFLATGFGSYLAIPILRKKWRPDLDEGEARALLEECLRVLFYRDCRALNKIRLAKATAEGSVISDPYTLETSWSAASFQTVKGGLDADGGW 270
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BLAST of mRNA_H-elongata_contig17589.4588.1 vs. uniprot
Match: F0Y8W5_AURAN (Proteasome subunit beta n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y8W5_AURAN)

HSP 1 Score: 317 bits (811), Expect = 2.350e-106
Identity = 156/249 (62.65%), Postives = 192/249 (77.11%), Query Frame = 1 
Query:   10 HATARGTGRVTASMDSMDGTRQHTSQPIVTGTSVLGIKYKDGVMLAADTLASYGSLARYKNVERIKPVGDCTLIGASGEYSDFQNIIQMMEENHQFDLNVEDGFEMSPSEYFNLLRAIMYNRRNDFNPLWNYLLIAGCQKDGKPFLGSVDHIGTCYEDNILATGFGGHLALPILRKKWRPDLEEGEARALLEDCMRVLFYRDCRSLNRIQIAKATVEGTVVSDPFTVETSWNLASFAQPKAGEDTDGSW 756
            H  AR    V++S  +    RQHTS+PIVTGTSVLGIKYKDGVMLAADTLASYGSLA +K+V+RI   G  TL+GASGE SD+  I++ +E   + +LN  DGFE SP E ++ LRA+MY  RN FNPLWN L++ G  KDGK FLGSVD  GT YED+++ATGFG HLALPI+R KW  D++EGEARALLEDC+RVLFYRDCR+L+ + ++KAT +GT+VSDP+ +ET W+ ASF  PKAGED DG W
Sbjct:    6 HEPARANNVVSSSPSAPP--RQHTSRPIVTGTSVLGIKYKDGVMLAADTLASYGSLAMFKDVQRISKTGSYTLVGASGEMSDYHAILRKLEGLERDNLNANDGFEHSPVEIYSYLRAVMYQARNKFNPLWNSLVVGG-YKDGKAFLGSVDLRGTAYEDDVIATGFGAHLALPIMRAKWHADIDEGEARALLEDCLRVLFYRDCRALDMVVLSKATADGTLVSDPYKIETDWSSASFVVPKAGEDGDGGW 251
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BLAST of mRNA_H-elongata_contig17589.4588.1 vs. uniprot
Match: A0A7S3ZJK1_9STRA (Proteasome subunit beta n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZJK1_9STRA)

HSP 1 Score: 308 bits (788), Expect = 1.500e-102
Identity = 147/229 (64.19%), Postives = 181/229 (79.04%), Query Frame = 1 
Query:   70 RQHTSQPIVTGTSVLGIKYKDGVMLAADTLASYGSLARYKNVERIKPVGDCTLIGASGEYSDFQNIIQMMEENHQFDLNVEDGFEMSPSEYFNLLRAIMYNRRNDFNPLWNYLLIAGCQKDGKPFLGSVDHIGTCYEDNILATGFGGHLALPILRKKWRPDLEEGEARALLEDCMRVLFYRDCRSLNRIQIAKATVEGTVVSDPFTVETSWNLASFAQPKAGEDTDGSW 756
            RQHTS+PIVTGTSVLGIKYKDGVMLAADTLASYGSLA +K+V RI   G  TL+GASGE SD+  ++  ++   Q + N +DGFE  P+E ++ LRA++Y RRN F+PLWN L++ G  KDG PFLGSVD  GT YED+++ATG+G HLALPI+R KW PDL+EGEARALLEDC+RVLFYRDCR+L+ + ++KAT  GT+VSDP+ +ET W  ASF  PKAG D DG W
Sbjct:   45 RQHTSRPIVTGTSVLGIKYKDGVMLAADTLASYGSLAMFKDVTRIARTGSYTLVGASGELSDYHALLDKLKGLAQANANCDDGFEHGPAEIYSYLRAVLYQRRNKFDPLWNSLVVGGF-KDGAPFLGSVDLRGTAYEDDVIATGYGSHLALPIMRAKWTPDLDEGEARALLEDCLRVLFYRDCRALDTVVLSKATATGTLVSDPYKLETDWTSASFVAPKAGGDGDGGW 272
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BLAST of mRNA_H-elongata_contig17589.4588.1 vs. uniprot
Match: A0A7S3HPE8_9STRA (Proteasome subunit beta n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HPE8_9STRA)

HSP 1 Score: 298 bits (763), Expect = 4.330e-99
Identity = 139/214 (64.95%), Postives = 179/214 (83.64%), Query Frame = 1 
Query:   76 HTSQPIVTGTSVLGIKYKDGVMLAADTLASYGSLARYKNVERIKPVGDCTLIGASGEYSDFQNIIQMMEENHQFDLNVEDGFEMSPSEYFNLLRAIMYNRRNDFNPLWNYLLIAGCQKDGKPFLGSVDHIGTCYEDNILATGFGGHLALPILRKKWRPDLEEGEARALLEDCMRVLFYRDCRSLNRIQIAKATVEGTVVSDPFTVETSWNLASF 717
            HT+QPIVTGT+V+GIKY  GVMLAADTLASYGSLARYK+V R+K VG+ TLIGASGE SDFQ I++M++  +Q D+N +DG++ SPSEYFN LRAI+Y +R   NPLWN LL+AG  K+  PFLG VD IGT YE+N +ATGFG +LA+P++R+KW  +++EGEAR+LLEDC+RV+FYRDCR+LNRIQIAKA+ +GT+VS+P+ + T W  A+F
Sbjct:   22 HTTQPIVTGTTVIGIKYNGGVMLAADTLASYGSLARYKDVRRLKQVGENTLIGASGEISDFQTIMEMLDSMNQSDINEDDGYKRSPSEYFNYLRAILYQKRGKGNPLWNQLLVAGFHKEA-PFLGYVDLIGTAYEENFIATGFGAYLAIPLIREKWYAEMDEGEARSLLEDCLRVMFYRDCRALNRIQIAKASADGTLVSEPYEISTEWETANF 234
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BLAST of mRNA_H-elongata_contig17589.4588.1 vs. uniprot
Match: A0A6S8AP70_9STRA (Proteasome subunit beta n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A6S8AP70_9STRA)

HSP 1 Score: 295 bits (754), Expect = 1.320e-97
Identity = 138/227 (60.79%), Postives = 177/227 (77.97%), Query Frame = 1 
Query:   76 HTSQPIVTGTSVLGIKYKDGVMLAADTLASYGSLARYKNVERIKPVGDCTLIGASGEYSDFQNIIQMMEENHQFDLNVEDGFEMSPSEYFNLLRAIMYNRRNDFNPLWNYLLIAGCQKDGKPFLGSVDHIGTCYEDNILATGFGGHLALPILRKKWRPDLEEGEARALLEDCMRVLFYRDCRSLNRIQIAKATVEGTVVSDPFTVETSWNLASFAQPKAGEDTDGSW 756
            HT +PIVTGTSVLG+KYKDG+M+AADTLASYGSLA +K V RI P G  TL+G SGE SDF +I++++EE  + +LN +DGFE  P+E +  LR +MYNRR+  NPLWN L++ G  KDG+ FLG VD  GT Y D+++ATG+G HLA+P++R KWRP LEEGEAR LLEDC+RVLFYRDCR+L+ I ++KAT +GT+VS P+ + T W+ ASF  PKA +D DG W
Sbjct:   32 HTQRPIVTGTSVLGLKYKDGIMMAADTLASYGSLAMFKEVTRIAPAGTNTLVGGSGEMSDFHHILRLLEELGRENLNADDGFEHPPAEIYRYLRTVMYNRRSKLNPLWNQLVVGG-HKDGESFLGVVDLRGTAYTDDVVATGYGAHLAMPVMRNKWRPGLEEGEARNLLEDCLRVLFYRDCRALDTIILSKATDQGTLVSPPYKLTTDWSSASFVVPKADDDGDGGW 257
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BLAST of mRNA_H-elongata_contig17589.4588.1 vs. uniprot
Match: A0A812X8W8_9DINO (Proteasome subunit beta n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812X8W8_9DINO)

HSP 1 Score: 291 bits (746), Expect = 1.600e-96
Identity = 141/252 (55.95%), Postives = 187/252 (74.21%), Query Frame = 1 
Query:    1 MLCHATARGTGRVTASMDSMDGTRQHTSQPIVTGTSVLGIKYKDGVMLAADTLASYGSLARYKNVERIKPVGDCTLIGASGEYSDFQNIIQMMEENHQFDLNVEDGFEMSPSEYFNLLRAIMYNRRNDFNPLWNYLLIAGCQKDGKPFLGSVDHIGTCYEDNILATGFGGHLALPILRKKWRPDLEEGEARALLEDCMRVLFYRDCRSLNRIQIAKATVEGTVVSDPFTVETSWNLASFAQPKAGEDTDGSW 756
            M   ATA GTG V     S     +HT+QPIVTGTSV+ IKYKDGVM+AADTL SYG LAR+ ++ R+K VG  TLIG SGEYSDFQ I+ +++E  + D NVEDG E++  E  N L  +MYNRRN  NPLWN +++AG + DG   LG+VDHIGT Y ++ + TGFGGH+A+P++R+ W+PD+ E +ARAL+E+CM++L+YRDCR++N+I +AK T EG +VS+PFT+ T W+  SF + KAG DT GSW
Sbjct:    1 MASSATA-GTGIVVGG--STAAPVKHTTQPIVTGTSVIAIKYKDGVMMAADTLGSYGGLARFTDLRRLKVVGKSTLIGCSGEYSDFQYILSLLDELVEEDANVEDGRELTAEEVHNYLTRVMYNRRNKGNPLWNSIVVAGVE-DGVATLGTVDHIGTAYTEDFIVTGFGGHMAIPLIRESWKPDMSESDARALVEECMKILYYRDCRTINKITLAKITAEGGMVSEPFTLATKWDFQSFIKAKAGADTGGSW 248
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BLAST of mRNA_H-elongata_contig17589.4588.1 vs. uniprot
Match: A0A7S2S9Q9_9STRA (Proteasome subunit beta n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S9Q9_9STRA)

HSP 1 Score: 284 bits (726), Expect = 2.280e-93
Identity = 139/232 (59.91%), Postives = 173/232 (74.57%), Query Frame = 1 
Query:   79 TSQPIVTGTSVLGIKYKDGVMLAADTLASYGSLARYKNVERIKPVGDCTLIGASGEYSDFQNIIQMMEENHQFD------LNVEDGFEMSPSEYFNLLRAIMYNRRNDFNPLWNYLLIAGCQKDGKPFLGSVDHIGTCYEDNILATGFGGHLALPILRKKWRPDLEEGEARALLEDCMRVLFYRDCRSLNRIQIAKATVEGTVVSDPFTVETSWNLASFAQPKAGEDTDGSW 756
            T++PIVTGTSVLGIKY  GVMLAADTL SYG +A+YK+  R+  V   TLIG  GEYSDF  + ++++ N   D      L  ED       E +N LRA+MYNRRN  NPLWN LL+AG   +G+PFLG VD IGT YEDNI+ATGFG +LA+P++R+K+RPD+EEGEARALLEDCMRVLFYRDCR+LNRIQIAKAT +  ++SDP+ +ET+W+ A + +PK   D DG W
Sbjct:   25 TTRPIVTGTSVLGIKYAGGVMLAADTLCSYGGMAKYKDARRLVDVNGKTLIGGGGEYSDFTAVCELLKRNALEDKCTSDSLYDEDNTHGCAREVWNYLRAVMYNRRNKMNPLWNELLVAGYSSEGQPFLGYVDKIGTTYEDNIVATGFGSYLAMPLMREKYRPDMEEGEARALLEDCMRVLFYRDCRALNRIQIAKATPDEVLISDPYELETNWDSAEYMKPKGQLDGDGGW 256
[Close]
BLAST of mRNA_H-elongata_contig17589.4588.1 vs. uniprot
Match: A0A7S2XLY0_9STRA (Proteasome subunit beta n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XLY0_9STRA)

HSP 1 Score: 283 bits (725), Expect = 4.830e-93
Identity = 151/261 (57.85%), Postives = 187/261 (71.65%), Query Frame = 1 
Query:   13 ATARGTGRVTASMDSMDGTRQHTSQPIVTGTSVLGIKYKDGVMLAADTLASYGSLARYKNVERIKPVGDCTLIGASGEYSDFQNIIQMMEENHQFDLNVEDGF--------EMSPSEYFNLLRAIMYNRRNDFNPLWNYLLIAGCQK---DGKPFLGSVDHIGTCYEDNILATGFGGHLALPILRKKWRPDLEEGEARALLEDCMRVLFYRDCRSLNRIQIAKATVE-GTVVSDPFTVETSWNLASFAQPKAGEDT-DGSW 756
            + AR +G  ++ +D++ G  + TS+PIVTGTSVLGIKY+ GVMLAADTL SYG++A+YK+  R+      TLIG  GEYSDFQ I  M++ N   D  + D          E S  E ++ LRA+MYNRRN  NPLWN LL+AG  K   DGKPFLG VD IGT YED+ +ATGFG +LALPILR+K+RPDLEEGEARALLEDCMRVLFYRDCR+LNRIQIAK T E G ++ +P+ ++TSW+  +F Q K G D  DG W
Sbjct:   10 SAARSSGP-SSELDAL-GASERTSRPIVTGTSVLGIKYQGGVMLAADTLCSYGTMAKYKDARRLLEANSGTLIGGGGEYSDFQAISMMLKANAMEDRCLSDSLYDEDDGTTEESAKEVWSYLRAVMYNRRNKMNPLWNDLLVAGFDKKSKDGKPFLGFVDKIGTAYEDDCVATGFGSYLALPILREKYRPDLEEGEARALLEDCMRVLFYRDCRALNRIQIAKVTAESGVIIHEPYEIDTSWDSEAFVQSKGGLDEGDGGW 268
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17589.4588.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRR1_ECTSI2.720e-15482.75Proteasome subunit beta n=1 Tax=Ectocarpus silicul... [more]
A0A835Z5Q8_9STRA7.940e-12675.64Proteasome subunit beta n=1 Tax=Tribonema minus Ta... [more]
A0A7S2RSS8_9STRA2.040e-10968.42Proteasome subunit beta n=1 Tax=Rhizochromulina ma... [more]
F0Y8W5_AURAN2.350e-10662.65Proteasome subunit beta n=1 Tax=Aureococcus anopha... [more]
A0A7S3ZJK1_9STRA1.500e-10264.19Proteasome subunit beta n=3 Tax=Pelagomonas calceo... [more]
A0A7S3HPE8_9STRA4.330e-9964.95Proteasome subunit beta n=1 Tax=Spumella elongata ... [more]
A0A6S8AP70_9STRA1.320e-9760.79Proteasome subunit beta n=1 Tax=Aureoumbra lagunen... [more]
A0A812X8W8_9DINO1.600e-9655.95Proteasome subunit beta n=1 Tax=Symbiodinium sp. K... [more]
A0A7S2S9Q9_9STRA2.280e-9359.91Proteasome subunit beta n=1 Tax=Eucampia antarctic... [more]
A0A7S2XLY0_9STRA4.830e-9357.85Proteasome subunit beta n=1 Tax=Attheya septentrio... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17589contigH-elongata_contig17589:3609..7057 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score442.2
Seed ortholog evalue1.6e-121
Seed eggNOG ortholog2880.D8LRR1
Preferred namePSMB4
KEGG koko:K02736,ko:K05542,ko:K18740
KEGG Pathwayko03050,map03050
KEGG ModuleM00337,M00340
GOsGO:0000226,GO:0000502,GO:0001530,GO:0002682,GO:0002683,GO:0002861,GO:0002862,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0005839,GO:0005840,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006970,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007088,GO:0007098,GO:0007346,GO:0008150,GO:0008152,GO:0008233,GO:0008289,GO:0009056,GO:0009057,GO:0009628,GO:0009651,GO:0009896,GO:0009987,GO:0010035,GO:0010038,GO:0010498,GO:0010499,GO:0010564,GO:0010638,GO:0010965,GO:0012505,GO:0016020,GO:0016043,GO:0016579,GO:0016787,GO:0019538,GO:0019774,GO:0019941,GO:0022402,GO:0022607,GO:0022626,GO:0030071,GO:0030163,GO:0031023,GO:0031331,GO:0031347,GO:0031348,GO:0031597,GO:0031974,GO:0031981,GO:0031984,GO:0032101,GO:0032102,GO:0032270,GO:0032436,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034515,GO:0034622,GO:0036211,GO:0042175,GO:0042221,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043248,GO:0043412,GO:0043632,GO:0043687,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0046686,GO:0048518,GO:0048519,GO:0048522,GO:0048583,GO:0048585,GO:0050727,GO:0050728,GO:0050776,GO:0050777,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051247,GO:0051603,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0062033,GO:0065003,GO:0065007,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0071840,GO:0080134,GO:0090068,GO:0097367,GO:0098827,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903052,GO:1903364,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:1990904,GO:2001252
EggNOG free text desc.threonine-type endopeptidase activity
EggNOG OGsKOG0185@1,KOG0185@2759
EC1.3.1.88,3.4.25.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03016,ko03019,ko03051
Hectar predicted targeting categoryother localisation
Ec32 ortholog description20S proteasome beta subunit
Ec32 orthologEc-08_002100.1
Exons7
Model size759
Cds size759
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930018.912122-CDS-H-elongata_contig17589:3608..37361622930018.912122-CDS-H-elongata_contig17589:3608..3736Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17589 3609..3736 +
1691679248.314781-CDS-H-elongata_contig17589:3608..37361691679248.314781-CDS-H-elongata_contig17589:3608..3736Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17589 3609..3736 +
1622930018.931451-CDS-H-elongata_contig17589:4076..41571622930018.931451-CDS-H-elongata_contig17589:4076..4157Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17589 4077..4157 +
1691679248.328105-CDS-H-elongata_contig17589:4076..41571691679248.328105-CDS-H-elongata_contig17589:4076..4157Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17589 4077..4157 +
1622930018.9467387-CDS-H-elongata_contig17589:4474..46421622930018.9467387-CDS-H-elongata_contig17589:4474..4642Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17589 4475..4642 +
1691679248.3389025-CDS-H-elongata_contig17589:4474..46421691679248.3389025-CDS-H-elongata_contig17589:4474..4642Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17589 4475..4642 +
1622930018.9659297-CDS-H-elongata_contig17589:4913..50031622930018.9659297-CDS-H-elongata_contig17589:4913..5003Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17589 4914..5003 +
1691679248.3465245-CDS-H-elongata_contig17589:4913..50031691679248.3465245-CDS-H-elongata_contig17589:4913..5003Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17589 4914..5003 +
1622930018.9827101-CDS-H-elongata_contig17589:6078..61831622930018.9827101-CDS-H-elongata_contig17589:6078..6183Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17589 6079..6183 +
1691679248.354039-CDS-H-elongata_contig17589:6078..61831691679248.354039-CDS-H-elongata_contig17589:6078..6183Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17589 6079..6183 +
1622930018.998343-CDS-H-elongata_contig17589:6327..64421622930018.998343-CDS-H-elongata_contig17589:6327..6442Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17589 6328..6442 +
1691679248.3616328-CDS-H-elongata_contig17589:6327..64421691679248.3616328-CDS-H-elongata_contig17589:6327..6442Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17589 6328..6442 +
1622930019.010442-CDS-H-elongata_contig17589:6985..70571622930019.010442-CDS-H-elongata_contig17589:6985..7057Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17589 6986..7057 +
1691679248.3690724-CDS-H-elongata_contig17589:6985..70571691679248.3690724-CDS-H-elongata_contig17589:6985..7057Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17589 6986..7057 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17589.4588.1prot_H-elongata_contig17589.4588.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17589 3609..7057 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17589.4588.1

>prot_H-elongata_contig17589.4588.1 ID=prot_H-elongata_contig17589.4588.1|Name=mRNA_H-elongata_contig17589.4588.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=253bp
MLCHATARGTGRVTASMDSMDGTRQHTSQPIVTGTSVLGIKYKDGVMLAA
DTLASYGSLARYKNVERIKPVGDCTLIGASGEYSDFQNIIQMMEENHQFD
LNVEDGFEMSPSEYFNLLRAIMYNRRNDFNPLWNYLLIAGCQKDGKPFLG
SVDHIGTCYEDNILATGFGGHLALPILRKKWRPDLEEGEARALLEDCMRV
LFYRDCRSLNRIQIAKATVEGTVVSDPFTVETSWNLASFAQPKAGEDTDG
SW*
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mRNA from alignment at H-elongata_contig17589:3609..7057+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17589.4588.1 ID=mRNA_H-elongata_contig17589.4588.1|Name=mRNA_H-elongata_contig17589.4588.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3449bp|location=Sequence derived from alignment at H-elongata_contig17589:3609..7057+ (Himanthalia elongata Himel1 dioecious)
ATGCTCTGTCACGCAACGGCGCGGGGGACGGGGCGCGTAACGGCTTCGAT
GGATTCCATGGACGGTACTAGGCAGCACACGTCTCAGCCGATCGTGACAG
GAACTTCGGTCCTCGGTATCAAGTACAAGTGAGATTGAAGAGGGGAGGGG
TAAAGATTGATGGCTGAGGTTGGTGGGAGGTCGGGACGGTATTCGACCTT
CTGAGTCTAAATCGAGTCGAAGCTGTTTTGTGATCGTGCGATCGCGGCCA
AGACCATCTCCAAAAGCTGTACGGTATCGGTAGACAAGCGACATGACGAG
TATCAAGGTTGGAGGCGCTTTTCGTTAGCGATCTCGACCTCTTCGCGAAT
GCAAGGCGGCAATGACTTTCCGCGAAGTTGGCGCGCAGTATCAGGACGCC
AACGTGTCGCCTGACGAACCCCCCCCCCCCCCGGCCGAACCGAACCCTTC
TACTCTCCCTCTCCTCAGGGACGGCGTGATGCTGGCGGCAGACACTCTGG
CTTCCTACGGCAGCTTAGCCCGCTACAAAAACGTCGAGCGCATCAAACCG
TGAGTCTTCGATCGCCTTGTCTGCCGGCGCTTATGTTCGTCTCGATTGGA
TATGAAGCCGACCCAGCGTCTCCTCCCCACCCAATAACTCGTGGTTAGTG
CGAACCACTTCCTTGTTCACAATCAATTTTACGTTTTAGACTTTAATGAC
TTACTTCGAGTCTCCTATTCTAGTCAGCCCTCGACATTCTGAGGTAAAGG
TGTGAGGACGGTGCATGTTGGTCGCTCCTCGAAGCGGGATCTCGGAGTTT
TTTACGACACGTCGATGGTTGGAATCAGAGACATCGCGACCATTCCTCCA
CGCTTTCCTCCGGTAGGGTGGGAGACTGTACGTTGATTGGCGCGTCGGGT
GAGTATTCCGACTTTCAGAACATCATCCAGATGATGGAGGAAAACCACCA
GTTCGATCTCAACGTCGAAGACGGCTTCGAAATGAGCCCCTCCGAATATT
TCAACCTGCTAAGGGCCATCATGTACAATCGTAGGTGAGCTGCAACATCG
TGTTACAAAAAAAATTAAGGAAACTCTCGCGCGGCACGATGGTACGGATG
GGGGTGGAGGTGGAGGCACCGTGCATCGAGTTGTTTTGCTTGGCCCGCCC
GAGGTGACGGTGATTCGTAATGATCTTGATATCGATATCCTCAGTACAGA
CCCTTGGCACAGTAGCCCTTCGGCATTCATTGGTGAAAAGTGTCGCCACG
CCCTCAAGATTCGATACTCAGTCTTCTGAGTGTTCCTCGGTACCACGCCC
CACAGGAACGACTTTAACCCCTTGTGGAACTACCTGCTCATCGCCGGCTG
CCAAAAAGACGGCAAGCCTTTCCTGGGATCTGTTGACCACATTGGGTGAG
ATGTATCTCAAGGAAGCATCGCTCGCACCGCGTTTTTGAGGTTTTCACGT
TGTGAAGTCACTCATTTCGAGACGTTGCTGGTGTGCCTCCACCCCCCATG
CCCTTTAAAATTGAGACTATTAATGTATTAATGGCGCGATGCTGCAAAAG
TGGTGTAATCGACAAGAAGATTGTGCTAGACAACGTTATGTTCGTGGCAT
CATATCTTCTTGCTTGCAAATTATGTGCCGTGTTTCTAAAGAACGAAGCG
GCCAAAGGGAGAGAGAGAGACATCAGTTCAGCGAAACCACTACCTGTTTT
CAGCGATAACGCCTTTTAGATAAAGCCCTTGGACTTGCGATTAACATTTA
TAGATGAAACCGTTCTACTTGCCAATTACAGTTTTCATAGGTGAAACTTG
TTTACGTGCCAATAAATTGATAGATGAAACCGCTATTTTGATCGTTGCCA
TTCATCGATGACCGCTCTACTTGCCTTTTAAGCCGGACAGCTTAGAAACT
TTTAATAAAGAAACGCATGAAAGTATCTTTCAACCGCAACCCCAGCGTGT
TGCATCTTTCCCTTTCGATCCCGGTCTGTATCGCATATGTCCACTGTACT
GTAGTACCATTAGTGTGGGTGTGGGAAAAAGAGAGGCGCACAATAATTAG
TCCATGGGGTCACCTGGATAGGCTGCACCCGTTCCTCAAGCTACCTTAAG
AACTGTTGGCTCTGTGCTGGGCGGACTCCCGGTAGTGAAAGCCACCGGTA
CGGTGGGCAATTACGTAACCTGATGAACTCGGGAGTGACCCAATGGCTGT
TGACGATAGAGATGGATGCCGTCGTAGAAAGCGAGGATTGAGAGGATCCT
GGGAGAACGCACCAGATTCAGCATGCAGTATTCAGTATACACTATACAGT
ATGTTGGGTTGATAGAATGAGCGGACTGGCGCGGGACGGGACTGCCTAAC
CCGTCTCGCAAAGACCAAATTCCCAGGTCCAATTTGCCTGTTCAGGTGGC
CTTTATCAGGAAACCATATCCAGATGATCCATAATCTTGATATGTGATGA
CCCCCCCCCCTTTGTCCTAGGACTTGCTACGAGGACAACATCCTCGCCAC
CGGCTTTGGGGGGCACTTGGCTTTGCCGATTCTTCGCAAGAAGTGGAGGC
CGGATCTCGAGGAGGGGGAAGCGAGGTAACGTGCTCGTCGTTGGTAAGAT
CGAGATGGTGCAGCACTCTTCTTTTATTTCCAATGTGTAATCGGTTTTAG
AAGCGCATCGGGAATGCGGTCGACTCCGAAGACACCCTTCATTCCCTCTT
GGCGTTGCCATTCCCACAGGGCGTTGCTGGAGGACTGCATGCGAGTGCTC
TTTTACCGTGACTGTCGCTCGCTCAACCGGATCCAGATAGCGAAGGCTAC
CGTGGAGGGCACGGTGGTTAGCGATCCTTTCACGGTGCGTGAGATAAGAT
GAAACGATATGAGACGCATGCGATAACAGTTTTTTTCCCCACTGCGATGT
TTTAGGAAACCCGTAAAGTAATGGTTGAGGTGAAAGCAGACAGCGATTTC
CGTTTCGCGAAGTGCAGTTTTGCATGAACCCTCGGCCCCTGTTTGTCTTA
ACACGAAATAAATGACTCAAACTGTACTATAAAGGCGTTCCCCCATTCCA
TGTTGTCTTTTTGTTTCTTGTAAGGCATAAATATGCTGCTACTAGAGAAC
ACACAGGGTGTCCTGTGATATCAAAAACCCCAGTCGCCTGGTCCCTACCC
GAAGGGGCGAAACACAGCACATTCAGCACATTCTATAGGAGTGGGTAGCT
TCTAATATACGTAGGACCGACGGCAGAATTCATCTCGCGGGAGGTACTCA
GGCACGAACGTTGAAGAATTTTCCCTGTCCATGTGCAAGATCGGTAACCA
TATTCGGTAGATTAATACTCATCCAACCCAAAATGTACATTTCCCCCAAA
TCGTCCCTATTACACATCCAAGAGCAGGTGGAAACGAGCTGGAATCTCGC
CTCTTTCGCACAGCCCAAGGCAGGAGAAGATACCGATGGTAGCTGGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig17589:3609..7057+

>mRNA_H-elongata_contig17589.4588.1 ID=mRNA_H-elongata_contig17589.4588.1|Name=mRNA_H-elongata_contig17589.4588.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1518bp|location=Sequence derived from alignment at H-elongata_contig17589:3609..7057+ (Himanthalia elongata Himel1 dioecious)
ATGCTCTGTCACGCAACGGCGCGGGGGACGGGGCGCGTAACGGCTTCGAT
GGATTCCATGGACGGTACTAGGCAGCACACGTCTCAGCCGATCGTGACAG
GAACTTCGGTCCTCGGTATCAAGTACAAATGCTCTGTCACGCAACGGCGC
GGGGGACGGGGCGCGTAACGGCTTCGATGGATTCCATGGACGGTACTAGG
CAGCACACGTCTCAGCCGATCGTGACAGGAACTTCGGTCCTCGGTATCAA
GTACAAGGACGGCGTGATGCTGGCGGCAGACACTCTGGCTTCCTACGGCA
GCTTAGCCCGCTACAAAAACGTCGAGCGCATCAAACCGGACGGCGTGATG
CTGGCGGCAGACACTCTGGCTTCCTACGGCAGCTTAGCCCGCTACAAAAA
CGTCGAGCGCATCAAACCGGTGGGAGACTGTACGTTGATTGGCGCGTCGG
GTGAGTATTCCGACTTTCAGAACATCATCCAGATGATGGAGGAAAACCAC
CAGTTCGATCTCAACGTCGAAGACGGCTTCGAAATGAGCCCCTCCGAATA
TTTCAACCTGCTAAGGGCCATCATGTACAATCGTAGGGTGGGAGACTGTA
CGTTGATTGGCGCGTCGGGTGAGTATTCCGACTTTCAGAACATCATCCAG
ATGATGGAGGAAAACCACCAGTTCGATCTCAACGTCGAAGACGGCTTCGA
AATGAGCCCCTCCGAATATTTCAACCTGCTAAGGGCCATCATGTACAATC
GTAGGAACGACTTTAACCCCTTGTGGAACTACCTGCTCATCGCCGGCTGC
CAAAAAGACGGCAAGCCTTTCCTGGGATCTGTTGACCACATTGGGAACGA
CTTTAACCCCTTGTGGAACTACCTGCTCATCGCCGGCTGCCAAAAAGACG
GCAAGCCTTTCCTGGGATCTGTTGACCACATTGGGACTTGCTACGAGGAC
AACATCCTCGCCACCGGCTTTGGGGGGCACTTGGCTTTGCCGATTCTTCG
CAAGAAGTGGAGGCCGGATCTCGAGGAGGGGGAAGCGAGGACTTGCTACG
AGGACAACATCCTCGCCACCGGCTTTGGGGGGCACTTGGCTTTGCCGATT
CTTCGCAAGAAGTGGAGGCCGGATCTCGAGGAGGGGGAAGCGAGGGCGTT
GCTGGAGGACTGCATGCGAGTGCTCTTTTACCGTGACTGTCGCTCGCTCA
ACCGGATCCAGATAGCGAAGGCTACCGTGGAGGGCACGGTGGTTAGCGAT
CCTTTCACGGGCGTTGCTGGAGGACTGCATGCGAGTGCTCTTTTACCGTG
ACTGTCGCTCGCTCAACCGGATCCAGATAGCGAAGGCTACCGTGGAGGGC
ACGGTGGTTAGCGATCCTTTCACGGTGGAAACGAGCTGGAATCTCGCCTC
TTTCGCACAGCCCAAGGCAGGAGAAGATACCGATGGTAGCTGGTAGGTGG
AAACGAGCTGGAATCTCGCCTCTTTCGCACAGCCCAAGGCAGGAGAAGAT
ACCGATGGTAGCTGGTAG
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